Metagenome Family F079212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079212
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	MNQDEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSGKV
Number of Associated Samples	78
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.93 %
% of genes near scaffold ends (potentially truncated)	16.38 %
% of genes from short scaffolds (< 2000 bps)	68.10 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (51.724 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (42.241 % of family members)
Environment Ontology (ENVO)	Unclassified (94.828 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.690 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1DelMOSum2010_1000625023 2DelMOSum2011_101348284 3DelMOSum2011_101526274 4KVRMV2_1012615596 5JGI25132J35274_10067459 6JGI25128J35275_100033629 7JGI25133J35611_100125661 8JGI25133J35611_1001272710 9JGI25133J35611_100418353 10Ga0066849_100406841 11Ga0075466_100381316 12Ga0075466_10269557 13Ga0075441_102586562 14Ga0100228_10558495 15Ga0100228_12597714 16Ga0098038_103334010 17Ga0098038_10757655 18Ga0098038_10900004 19Ga0098038_11730172 20Ga0098035_12502272 21Ga0098040_100175423 22Ga0098040_10089622 23Ga0098048_10918762 24Ga0098054_102713211 25Ga0098053_11248421 26Ga0098036_11993863 27Ga0180120_100454587 28Ga0181372_10069294 29Ga0181377_10382503 30Ga0181403_100042721 31Ga0181391_11364263 32Ga0181412_11412051 33Ga0181404_10304102 34Ga0181383_10957932 35Ga0181383_11796952 36Ga0181417_10195886 37Ga0181428_10103279 38Ga0181428_11425871 39Ga0181397_11095451 40Ga0187219_11861733 41Ga0181414_10234277 42Ga0181408_101489911 43Ga0181408_11746382 44Ga0187220_12143113 45Ga0181394_11786304 46Ga0206125_1000216933 47Ga0206125_1000842117 48Ga0206125_1002057811 49Ga0206131_104562751 50Ga0211477_1000143113 51Ga0211675_1000409211 52Ga0211497_101202393 53Ga0211497_102173204 54Ga0211532_100440125 55Ga0211532_101042575 56Ga0211532_101678172 57Ga0211532_103811742 58Ga0211472_101600193 59Ga0211587_101799753 60Ga0211587_103604643 61Ga0211521_100477997 62Ga0211521_100593346 63Ga0211521_101165022 64Ga0211521_102178633 65Ga0211521_104218243 66Ga0211708_100759393 67Ga0211638_100104725 68Ga0211551_100900174 69Ga0211713_104415322 70Ga0211543_100930276 71Ga0211543_105784262 72Ga0211579_1000062643 73Ga0211579_101170755 74Ga0196887_10381635 75Ga0208298_100513214 76Ga0208011_10154547 77Ga0208011_10237163 78Ga0208669_100518613 79Ga0208666_10865763 80Ga0208013_10073252 81Ga0208793_10467896 82Ga0209535_10985193 83Ga0209535_11046004 84Ga0209535_12209312 85Ga0209348_10395884 86Ga0208919_11765883 87Ga0209232_100115324 88Ga0209232_100119824 89Ga0209232_10206007 90Ga0208299_12496952 91Ga0209756_100619020 92Ga0209756_101844419 93Ga0209756_10232761 94Ga0209756_10787666 95Ga0209756_11404734 96Ga0209645_10437114 97Ga0209645_10746351 98Ga0209337_13360411 99Ga0208148_100655915 100Ga0208134_11782022 101Ga0209532_11303031 102Ga0209193_10023697 103Ga0209193_11334322 104Ga0209308_103216921 105Ga0208407_11070304 106Ga0209709_1000062150 107Ga0209709_1000330028 108Ga0209404_101707972 109Ga0209404_102350842 110Ga0256382_11201382 111Ga0183748_10442224 112Ga0183755_10807153 113Ga0302132_101528992 114Ga0315320_108989242 115Ga0315330_104818685 116Ga0315315_1006841413
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 1DelMOSum2010_1000625023 2DelMOSum2011_101348284 3JGI25132J35274_10067459 4JGI25128J35275_100033629 5JGI25133J35611_1001272710 6JGI25133J35611_100418353 7Ga0100228_10558495 8Ga0100228_12597714 9Ga0098038_103334010 10Ga0098038_10757655 11Ga0181372_10069294 12Ga0181412_11412051 13Ga0181383_11796952 14Ga0181397_11095451 15Ga0206125_1002057811 16Ga0211675_1000409211 17Ga0211497_101202393 18Ga0211532_100440125 19Ga0211532_101678172 20Ga0211587_103604643 21Ga0211708_100759393 22Ga0211543_100930276 23Ga0211543_105784262 24Ga0209645_10746351 25Ga0209532_11303031 26Ga0209709_1000330028
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0256382_11201382 2DelMOSum2010_1000625023 3DelMOSum2011_101348284 4JGI25132J35274_10067459 5JGI25128J35275_100033629 6JGI25133J35611_100125661 7JGI25133J35611_1001272710 8Ga0075466_10269557 9Ga0100228_10558495 10Ga0100228_12597714 11Ga0098054_102713211 12Ga0181391_11364263 13Ga0181408_101489911 14Ga0187220_12143113 15Ga0206125_1000216933 16Ga0206125_1002057811 17Ga0211675_1000409211 18Ga0211497_101202393 19Ga0211532_100440125 20Ga0211532_101678172 21Ga0211532_103811742 22Ga0211472_101600193 23Ga0211587_103604643 24Ga0211521_100477997 25Ga0211521_100593346 26Ga0211708_100759393 27Ga0211551_100900174 28Ga0211713_104415322 29Ga0211543_100930276 30Ga0211543_105784262 31Ga0211579_1000062643 32Ga0211579_101170755 33Ga0196887_10381635 34Ga0208298_100513214 35Ga0208011_10154547 36Ga0208666_10865763 37Ga0208793_10467896 38Ga0209535_11046004 39Ga0209232_10206007 40Ga0209756_101844419 41Ga0209193_10023697 42Ga0209193_11334322 43Ga0209709_1000330028 44Ga0183748_10442224 45Ga0315315_1006841413
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.32% β-sheet: 0.00% Coil/Unstructured: 43.68%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00462	Glutaredoxin	6.90
PF04134	DCC1-like	2.59
PF14328	DUF4385	1.72
PF04545	Sigma70_r4	1.72
PF13203	DUF2201_N	0.86
PF01909	NTP_transf_2	0.86
PF13365	Trypsin_2	0.86

Showing 1 to 7 of 7 entries

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COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	2.59

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.31 %
Unclassified	root	N/A	20.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.72 %
Unclassified	root	N/A	20.69 %
Viruses	superkingdom	All Organisms → Viruses	27.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Unclassified	root	N/A	20.69 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.86 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	9.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.72 %
Unclassified	root	N/A	20.69 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.86 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	8.62 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Unclassified	root	N/A	20.69 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.86 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.72 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8.62 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.86 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.86 %
Unclassified	root	N/A	20.69 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.86 %

Name	Rank	Taxonomy	Distribution
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	8.62 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.86 %
Unclassified	root	N/A	20.69 %
unclassified Opitutae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae	1.72 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	8.62 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.86 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.86 %
Unclassified	root	N/A	20.69 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.86 %
Unclassified	root	N/A	20.69 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	8.62 %
unclassified Marinobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter	0.86 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8.62 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.86 %
Marinobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	0.86 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	26.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.86 %
Unclassified	root	N/A	20.69 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10006250	Not Available	8292	Open in IMG/M
3300000115\|DelMOSum2011_c10134828	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300000115\|DelMOSum2011_c10152627	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300002231\|KVRMV2_101261559	All Organisms → Viruses → Predicted Viral	1323	Open in IMG/M
3300002483\|JGI25132J35274_1006745	All Organisms → cellular organisms → Bacteria	2874	Open in IMG/M
3300002488\|JGI25128J35275_1000336	All Organisms → cellular organisms → Bacteria	14661	Open in IMG/M
3300002514\|JGI25133J35611_10012566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	3615	Open in IMG/M
3300002514\|JGI25133J35611_10012727	All Organisms → cellular organisms → Bacteria	3588	Open in IMG/M
3300002514\|JGI25133J35611_10041835	All Organisms → Viruses → Predicted Viral	1614	Open in IMG/M
3300005430\|Ga0066849_10040684	Not Available	1879	Open in IMG/M

Showing 1 to 10 of 116 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	5.17%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.59%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.45%
Oceanic	Environmental → Aquatic → Marine → Oceanic	43.97%
Pelagic	Environmental → Aquatic → Marine → Pelagic	6.90%
Strait	Environmental → Aquatic → Marine → Strait	13.79%
Unclassified	Environmental → Aquatic → Marine → Unclassified	23.28%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.72%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.86%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	42.24%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	23.28%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	13.79%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	6.90%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.17%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.59%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.31%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.86%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	42.24%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	23.28%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.59%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.72%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.86%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.59%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.86%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	13.79%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	4.31%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.59%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006565	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m	Environmental	Open in IMG/M

Showing 1 to 10 of 78 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_1000625023	3300000101	Marine	MNEQERQLIDRCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFEIINESGRSSKSEE*
DelMOSum2011_101348284	3300000115	Marine	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRQKIRDERCMECFDFRIINESGRSGEDGK
DelMOSum2011_101526274	3300000115	Marine	YEKELIDRCIESHYNMIRMHRRAIIELSRKTIKERETCKECFDFEIINESGRSGESEE*
KVRMV2_1012615596	3300002231	Marine Sediment	MNQDEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSGKA*
JGI25132J35274_10067459	3300002483	Marine	MDQKQKKMIDECIESHYNMIKYHRRAIIELSRQTLKEPDICMECFDLEIKNENR*
JGI25128J35275_100033629	3300002488	Marine	VSDYEKNLIDRCIESHYNMIRMHRRAIIELSRKTIKERELCEECFDFDIINARTGSRTGGSK*
JGI25133J35611_100125661	3300002514	Marine	MIPPEEKLIDRCIQSHYNMIRHHRRQIIELSRRKLKEERCMECWEFEIINESGRSGK
JGI25133J35611_1001272710	3300002514	Marine	MNQDERELIDRCLESHYNMIRFHRRAIIELSRKTIKESEMCTECFNFEIIDESGRSGSEH
JGI25133J35611_100418353	3300002514	Marine	VNRDEKKLIHACIESHRRMIAHHRRQIIELSRKAIKESDSCIECFDMEIINESGRSGKSEE*
Ga0066849_100406841	3300005430	Marine	MNQDERELIDRCLESHYNMIRFHRRAIIELSRKTIKESEMCTECFNFEIID
Ga0075466_100381316	3300006029	Aqueous	MNPHEEKLIDRCIESHYNMIRHHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKS*
Ga0075466_10269557	3300006029	Aqueous	MSQYEKELIDRCIESHYNMIRMHRRAIIELSRKTIKERETCKECFDFEIINESGRSGESEE*
Ga0075441_102586562	3300006164	Marine	MNPDEEKLIDRCIESYYNMIKYHRRQIIELSRRKIKDERCMECFDFEIINESR*
Ga0100228_10558495	3300006565	Marine	MPLSFVKRMQRVNKDEKELIDRCIESHYNMIRMHRKAIIELSRKAIKERDWCDECFDFEIVNESGRSDKD*
Ga0100228_12597714	3300006565	Marine	NQDEKELIDKCIQAHYNMIRMHRNAIIELSRKTIKEREWCDECFDFEIINESGRSDKD*
Ga0098038_103334010	3300006735	Marine	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDFEII
Ga0098038_10757655	3300006735	Marine	MNQGEKELIDRCIESHYNMIRMHRRAIIELSRKMLKEPEMCTECFDFEIINESR*
Ga0098038_10900004	3300006735	Marine	MNQDERELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDLEIINESGRSGKV*
Ga0098038_11730172	3300006735	Marine	MNQGEKELIDRCIESHYNMIKMHRRAIIELSRKMLKEPEMCTECFDFEIVSESR*
Ga0098035_12502272	3300006738	Marine	MNKDEKELIDRCIESHYNMIRFHRRAIIELSRKTIKESEMGTECFDFEIINESGRSGKSEE*
Ga0098040_100175423	3300006751	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCEECFDLEIINESGRSGKV*
Ga0098040_10089622	3300006751	Marine	MNKDEKELIDRCIESHYNMIRFHRRAIIDLSRKTIKESEMCTECFDFEIINESGRSGKSEE*
Ga0098048_10918762	3300006752	Marine	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDFEIINESGRSGKSEERS*
Ga0098054_102713211	3300006789	Marine	RTKTVNRDEKKLIHACIESHRRMIAHHRRQIIELSRKAIKESDSCIECFDMEIINESGRSGKSEE*
Ga0098053_11248421	3300006923	Marine	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRRKIKEERCMECFDFEIINESGRS
Ga0098036_11993863	3300006929	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTIREREWCDECFDLEIINESGRSGKV*
Ga0180120_100454587	3300017697	Freshwater To Marine Saline Gradient	MSQYEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSSKSE
Ga0181372_10069294	3300017705	Marine	MPPLFVKRKKRVNPDERKLIDRCIESHYNMIRFHRRAIIELSRKTIKESEMCTECFDFEIINESGRSGKSEE
Ga0181377_10382503	3300017706	Marine	MNEYEKQLIDRCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFKIINESGRSSKSE
Ga0181403_100042721	3300017710	Seawater	VSKDETNLIHVCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSSKSE
Ga0181391_11364263	3300017713	Seawater	VSKDETNLIHVCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFEIINESGRSSKSE
Ga0181412_11412051	3300017714	Seawater	MNDYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDYEIINESGRSGKSEERS
Ga0181404_10304102	3300017717	Seawater	MNEQERKLIDRCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFEIINESGRSSKSE
Ga0181383_10957932	3300017720	Seawater	MNQYEKELIDRCIESHHNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSGKSE
Ga0181383_11796952	3300017720	Seawater	MPPLCAKRMQKMTPEEEKLIDRCIESHYNMIRHHRRHIIELSRRKIKDERCMECFDYEIINESGRSSKVE
Ga0181417_10195886	3300017730	Seawater	MSQYEKELIDRCIESHHNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSSKSE
Ga0181428_10103279	3300017738	Seawater	MNDDEKKLIDKCIESHYNMIKFHRQAIIELTRKKFKERDWCDECFDFEIINESGRSDKD
Ga0181428_11425871	3300017738	Seawater	EEKLIDRCIESHYNMIRHHRRHIIELSRRKIKDERCMECFDYEIINESGRSSKVE
Ga0181397_11095451	3300017744	Seawater	MNADEEKLIDSCIESHYNMIRHHRRQIIELSRRKIKDERRMECFDFEI
Ga0187219_11861733	3300017751	Seawater	LIHVCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSGKSEE
Ga0181414_10234277	3300017759	Seawater	MSQYEKELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSSKSE
Ga0181408_101489911	3300017760	Seawater	MSQYEKELIDRCIESHHNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSSKGE
Ga0181408_11746382	3300017760	Seawater	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFEFEVINESGRSGKV
Ga0187220_12143113	3300017768	Seawater	MNDDEKKLIDKCIESHYNMIKFHRQAIIELARKKFKERDWCDECFDFEIINESGRSDKD
Ga0181394_11786304	3300017776	Seawater	IDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSGKSEE
Ga0206125_1000216933	3300020165	Seawater	MSRDEEELIDRCIESYYNMIRYHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKSEE
Ga0206125_1000842117	3300020165	Seawater	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCIECFDFEIINESGRSGKSEE
Ga0206125_1002057811	3300020165	Seawater	MSKDETNLIHVCIESHRRMIMQHRRAIIELSRKTIKEREPCKECFDYEIINESGRSSKSE
Ga0206131_104562751	3300020185	Seawater	KMSRDEEELIDRCIESYYNMIRYHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKSE
Ga0211477_1000143113	3300020374	Marine	VSENQKELIDRCIESHYNMIRYHRRAIVELSRKMLKEPEMCTECFDFEIINESGRSDKD
Ga0211675_1000409211	3300020391	Marine	MCMTPEEELIKECIESHRRMIKYHRAQIIELSRRIIKTEREMQSFEFDFINKSGRPY
Ga0211497_101202393	3300020394	Marine	MDEHQKQMITACIESHHRMIAYHRRQIIELSRRVLKEPEMCKECFDFEIINESR
Ga0211497_102173204	3300020394	Marine	MQLLFVKRMQRVDKNQKELIDRCIESHYNMIRYHRRSIIELSRKMLKESEMCIECFDFEIVNESGRFNKD
Ga0211532_100440125	3300020403	Marine	MVTQDEKELIDKCIESHYNMIKHHRKAILELERKKIKERDWCDECFNFEIVNEKKR
Ga0211532_101042575	3300020403	Marine	MTQDEKELIDKCIESHYNMIKHHRKAILELERKKFKERDWCDECFDFEVINEKKR
Ga0211532_101678172	3300020403	Marine	VEENQKELIDRCIESHYNMIRYHRRAIIELSRKMLKESEICMECFDIEIINESGRSGKV
Ga0211532_103811742	3300020403	Marine	VNDDEKKLIDSCIESHYNMIRYHRRAIIELSRKMLKEPEICMECFDIEIKNEGR
Ga0211472_101600193	3300020409	Marine	VDKNQKELIDRCIESHYNMIRYHRRAIIELSRKMLKEPEMCAECFDFEIINESGRSNKD
Ga0211587_101799753	3300020411	Marine	VNQDEKELIDKCIEAHYNMIRMHRKAIIELSRKTIKEREWCDECFDFEIINESGRSGKV
Ga0211587_103604643	3300020411	Marine	MNKDEEKLIDGCIESHYNMIRHHRRQIVELSRKKIREREWCDECFDFEIINESR
Ga0211521_100477997	3300020428	Marine	VNEYEKKLIDRCIESHYNMIRHHRRAIIELSRKMLKEPEMCTECFDFEIISESGRSGKV
Ga0211521_100593346	3300020428	Marine	MNKHERQLIDRCIESHYNMIRMHRRAIIELSRKTIKERDWCDECFDFKIINENR
Ga0211521_101165022	3300020428	Marine	MNQHEKELIDRCIESHYNMIRMHRKAIIELSRKTIKEREWCDECFDFEIINENR
Ga0211521_102178633	3300020428	Marine	MNEQERQLIDRCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFEIINESGRSSKSE
Ga0211521_104218243	3300020428	Marine	MNEHERELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESR
Ga0211708_100759393	3300020436	Marine	VSKNEHEQSELFEECIEAHKRMIKYHRRAIIDLSRKTLKVPEICDECFKFEIINESG
Ga0211638_100104725	3300020448	Marine	VDENQKELIDRCIESHYNMIKYHRRAIIELSRKMLKEPEVCKECFDFEIINESR
Ga0211551_100900174	3300020456	Marine	MKDYEKELIDRCIESHYNMIRNHRRAIVELSRKILKEPEICMECFDIEIKNESR
Ga0211713_104415322	3300020467	Marine	VNDDEKKLIDSCIESHYNMIRYHRRAIVELSRKMLKEPEMCTECFDFEIINESGRSGKV
Ga0211543_100930276	3300020470	Marine	MSQSEKELIDKCIESHYNMIKYHRKAIQELERKKFKEREWCEECFDIEVINEGR
Ga0211543_105784262	3300020470	Marine	MNQDEEKLIDECIESHYNMIRFHRRQIIELSRRKILFHDLCDECFKIETKNEDSNSS
Ga0211579_1000062643	3300020472	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCEECFDLEIKNENR
Ga0211579_101170755	3300020472	Marine	VNDDEKKLIDSCIESHYNMIKHHRKAILDLERKKIKERDWCEECFDFEIINESGRSDKV
Ga0196887_10381635	3300022178	Aqueous	MNPHEEKLIDRCIESHYNMIRHHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKSEE
Ga0208298_100513214	3300025084	Marine	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDFEIINESGRSGKSEERS
Ga0208011_10154547	3300025096	Marine	MNKDEKELIDRCIESHYNMIRFHRRAIIDLSRKTIKESEMCTECFDFEIINESGRSGKSE
Ga0208011_10237163	3300025096	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCEECFDLEIINESGRSGKV
Ga0208669_100518613	3300025099	Marine	MNADEEKLIDSCIESHYNMIRHHRRQIIELSRRKIKDERRMECFDFEIINESGRSSKSEE
Ga0208666_10865763	3300025102	Marine	MNQGEKELIDRCIESHYNMIRMHRRAIIELSRKMLKEPEMCTECFDFEIINESR
Ga0208013_10073252	3300025103	Marine	MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCMECFDFEIINESGRSGKSEE
Ga0208793_10467896	3300025108	Marine	MKEYEKQLIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCDECFDFEIINESGRSGKSEERS
Ga0209535_10985193	3300025120	Marine	MSQYEKELIDRCIESHYNMIRMHRRAIIELSRKTIKERETCKECFDFEIINESGRSGESE
Ga0209535_11046004	3300025120	Marine	MNEQEEKLIDRCIESHYNMIKHHRRQIIELSRRKIKEDRCMECFDFEIINESGRSSKNEE
Ga0209535_12209312	3300025120	Marine	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRKKIKDERCMECFDFRIINESGRSGEDGK
Ga0209348_10395884	3300025127	Marine	VDENQKELIDRCIESHYNMIRYHRRAIIELSRKMLKEPEICMECFDIEIKNESR
Ga0208919_11765883	3300025128	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTIREREWCDECFDLEIINESGRSGKV
Ga0209232_100115324	3300025132	Marine	VSDYEKNLIDRCIESHYNMIRMHRRAIIELSRKTIKERELCEECFDFDIINARTGSRTGGSK
Ga0209232_100119824	3300025132	Marine	MNQDERELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDLEIINESGRSGKV
Ga0209232_10206007	3300025132	Marine	VDENQKELIDRCIESHYNMIRYHRRAIVELSRKMLKEPKICMECFDIEIKNESR
Ga0208299_12496952	3300025133	Marine	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRRKIKEERCMECFDFEIINESGRSGKSEE
Ga0209756_100619020	3300025141	Marine	VNRDEKKLIHACIESHRRMIAHHRRQIIELSRKAIKESDSCIECFDMEIINESGRSGKSE
Ga0209756_101844419	3300025141	Marine	VSKHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKESEICTECFDFEIINESGKSGEI
Ga0209756_10232761	3300025141	Marine	PPEEKLIDRCIQSHYNMIRHHRRQIIELSRRKLKEERCMECWEFEIINESGRSGKSEE
Ga0209756_10787666	3300025141	Marine	MNPDEEKLIDRCIESHYNMIRHHRRQIIELSRQKIKDERCMECFDFRIINESGRSGEDGK
Ga0209756_11404734	3300025141	Marine	MNKDEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSGKSE
Ga0209645_10437114	3300025151	Marine	MDQKQKKMIDECIESHYNMIKYHRRAIIELSRQTLKECEICMECFDLEIKNENR
Ga0209645_10746351	3300025151	Marine	MNDDEKILIDKCIESHYNMIKFHRQAIIELTRKKFKERDWCDECFDFEIVNESGRSGKV
Ga0209337_13360411	3300025168	Marine	MNEQEEKLIDRCIESYYNMIRHHRRQIIELSRRKIKDERCMECFDFEIINESGRLG
Ga0208148_100655915	3300025508	Aqueous	MNPHEEKLIDRCIESHYNMIRHHRRQIIELSRRKIKDERCMECFDFEIINESGRSSKS
Ga0208134_11782022	3300025652	Aqueous	MNEQEEKLIDRCIESHYNMIKHHRRQIIELSRRKIKDERCMECFDFEIINESGRLGKNEE
Ga0209532_11303031	3300025696	Pelagic Marine	VERNEEKLIDECIQSHYNMIKHHRRQIIELSWRKIKDEQCVECFDYEVINESGRLSE
Ga0209193_10023697	3300025816	Pelagic Marine	VERNEEKLIDECIQSHYNMIKHHRRQIIELSWRKIKDEQCVECFDYEVINESGRLSENDR
Ga0209193_11334322	3300025816	Pelagic Marine	VKTDEEKLIDSCIESHYNMIRHHRRQIIELSRRKIKDERRMECFDFEIINESGRSSKSEE
Ga0209308_103216921	3300025869	Pelagic Marine	MNEQERQLIDRCIESHYNMIRHHRRAIIDLSRRTIKERDWCDECFDFEIINESGRSS
Ga0208407_11070304	3300026257	Marine	MNQDERELIDRCLESHYNMIRFHRRAIIELSRKTIKESEMCTECFNFEIIDES
Ga0209709_1000062150	3300027779	Marine	MNPDEEKLIDRCIESYHNMIKHHRRQIIELSRRKIKDERCMECFDFEVINESGRSSKSEE
Ga0209709_1000330028	3300027779	Marine	MKNPDEEKLIDRCIESYYNMIRYHRRQIIELSRRKIKDDRCMECFDFEVINESR
Ga0209404_101707972	3300027906	Marine	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTLKEREWCEECFDFEIINESR
Ga0209404_102350842	3300027906	Marine	MNKHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFEFEVINESRRSGKV
Ga0256382_11201382	3300028022	Seawater	MNQDEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCDECFDFEIINESGRSGKV
Ga0183748_10442224	3300029319	Marine	MNDDEKKLIDKCIESHHNMIKFHRQAIIELTRKKFKETERCDECFDFEIINESGRSGKV
Ga0183755_10807153	3300029448	Marine	MSRDEEELIDRCIESYYNMIRYHRRQIIELSRRKIKDERCMECFEFEIINESGRSGKSKE
Ga0302132_101528992	3300031605	Marine	MNPDEEKLIDRCIESYYNMIRHHRRQIIELSRRKIKDDRCMECFDFEVINESR
Ga0315320_108989242	3300031851	Seawater	MNADEEKLIDSCIESHYNMIRRHRRQIIELSRRKIKDERRMECFDFEIINESGRSSKSEE
Ga0315330_104818685	3300032047	Seawater	TMNPDEKELIDRCIESYYNMIMMHRRAIIELSRKTIKESEICTECFDFEIINESGRSGKD
Ga0315315_1006841413	3300032073	Seawater	MNPDEKELIDRCIESYYNMIRMHRRAIIELSRKTIKESEICTECFDFEIINESGRSGKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters