Metagenome / Metatranscriptome Family F079132

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079132
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	44 residues
Representative Sequence	MEHMGNGTRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA
Number of Associated Samples	86
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.21 %
% of genes near scaffold ends (potentially truncated)	29.31 %
% of genes from short scaffolds (< 2000 bps)	78.45 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.207 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (21.552 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.138 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.85% β-sheet: 0.00% Coil/Unstructured: 59.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00528	BPD_transp_1	40.52
PF04978	DUF664	18.97
PF13379	NMT1_2	5.17
PF03795	YCII	2.59
PF04072	LCM	2.59
PF14588	YjgF_endoribonc	2.59
PF03069	FmdA_AmdA	1.72
PF11946	DUF3463	1.72
PF11954	DUF3471	0.86
PF07690	MFS_1	0.86
PF07179	SseB	0.86
PF01799	Fer2_2	0.86
PF01654	Cyt_bd_oxida_I	0.86
PF00005	ABC_tran	0.86
PF01402	RHH_1	0.86
PF01522	Polysacc_deac_1	0.86
PF00696	AA_kinase	0.86
PF00491	Arginase	0.86
PF07729	FCD	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.59
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.59
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	1.72
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.86
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.86
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.86
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	82.76 %
Unclassified	root	N/A	13.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	81.03 %
Unclassified	root	N/A	13.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	59.48 %
Unclassified	root	N/A	13.79 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.86 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	33.62 %
Unclassified	root	N/A	13.79 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	3.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Puniceicoccales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales	0.86 %

Name	Rank	Taxonomy	Distribution
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	26.72 %
Unclassified	root	N/A	13.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3.45 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.59 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Puniceicoccaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	26.72 %
Unclassified	root	N/A	13.79 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	3.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Ruficoccus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Ruficoccus	0.86 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.86 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	26.72 %
Unclassified	root	N/A	13.79 %
unclassified Micromonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Ruficoccus amylovorans	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Ruficoccus → Ruficoccus amylovorans	0.86 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.86 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	26.72 %
Unclassified	root	N/A	13.79 %
Micromonospora sp. H61	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. H61	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Ruficoccus amylovorans	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Ruficoccus → Ruficoccus amylovorans	0.86 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10095989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1225	Open in IMG/M
3300001867\|JGI12627J18819_10258383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	700	Open in IMG/M
3300002245\|JGIcombinedJ26739_100070408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3225	Open in IMG/M
3300002245\|JGIcombinedJ26739_100492686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1103	Open in IMG/M
3300002245\|JGIcombinedJ26739_100567635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1012	Open in IMG/M
3300005327\|Ga0070658_10015806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6034	Open in IMG/M
3300005329\|Ga0070683_101243711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	715	Open in IMG/M
3300005332\|Ga0066388_104284892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. H61	727	Open in IMG/M
3300005336\|Ga0070680_101061378	Not Available	700	Open in IMG/M
3300005434\|Ga0070709_10228934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1329	Open in IMG/M
3300005435\|Ga0070714_100064300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3157	Open in IMG/M
3300005436\|Ga0070713_101413085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	675	Open in IMG/M
3300005533\|Ga0070734_10518469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	679	Open in IMG/M
3300005535\|Ga0070684_100034392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4333	Open in IMG/M
3300005537\|Ga0070730_10392999	Not Available	898	Open in IMG/M
3300005564\|Ga0070664_101811484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	579	Open in IMG/M
3300005602\|Ga0070762_10258543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300005602\|Ga0070762_10291236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1026	Open in IMG/M
3300006173\|Ga0070716_100123329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1626	Open in IMG/M
3300006755\|Ga0079222_10199650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1201	Open in IMG/M
3300006804\|Ga0079221_10061814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1718	Open in IMG/M
3300006954\|Ga0079219_10400928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	909	Open in IMG/M
3300007265\|Ga0099794_10167788	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300007982\|Ga0102924_1003061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17720	Open in IMG/M
3300007982\|Ga0102924_1233740	Not Available	771	Open in IMG/M
3300009093\|Ga0105240_10829491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1000	Open in IMG/M
3300009093\|Ga0105240_12266700	Not Available	563	Open in IMG/M
3300009551\|Ga0105238_11786958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	647	Open in IMG/M
3300009826\|Ga0123355_11269741	Not Available	743	Open in IMG/M
3300010373\|Ga0134128_13024301	Not Available	517	Open in IMG/M
3300010379\|Ga0136449_100712154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1681	Open in IMG/M
3300010387\|Ga0136821_1130824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1563	Open in IMG/M
3300010396\|Ga0134126_10044723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5564	Open in IMG/M
3300010396\|Ga0134126_11623372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	711	Open in IMG/M
3300010866\|Ga0126344_1378437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	803	Open in IMG/M
3300010869\|Ga0126359_1631555	Not Available	551	Open in IMG/M
3300010876\|Ga0126361_10328593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4748	Open in IMG/M
3300010880\|Ga0126350_11637619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	863	Open in IMG/M
3300012357\|Ga0137384_11134663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	625	Open in IMG/M
3300012924\|Ga0137413_10075088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2038	Open in IMG/M
3300012930\|Ga0137407_12155272	Not Available	532	Open in IMG/M
3300013102\|Ga0157371_10537740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	865	Open in IMG/M
3300013307\|Ga0157372_10796756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1098	Open in IMG/M
3300014169\|Ga0181531_10156088	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1381	Open in IMG/M
3300014201\|Ga0181537_10032656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3583	Open in IMG/M
3300014501\|Ga0182024_11042040	Not Available	971	Open in IMG/M
3300015264\|Ga0137403_10409598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1235	Open in IMG/M
3300019887\|Ga0193729_1218712	All Organisms → cellular organisms → Bacteria → Terrabacteria group	634	Open in IMG/M
3300020070\|Ga0206356_10124374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1651	Open in IMG/M
3300020081\|Ga0206354_10946378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1626	Open in IMG/M
3300021086\|Ga0179596_10009895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3083	Open in IMG/M
3300021086\|Ga0179596_10370168	Not Available	721	Open in IMG/M
3300021170\|Ga0210400_11434170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300021180\|Ga0210396_10486400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1081	Open in IMG/M
3300021180\|Ga0210396_10625065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	935	Open in IMG/M
3300021180\|Ga0210396_11575645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	537	Open in IMG/M
3300021181\|Ga0210388_10411524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1189	Open in IMG/M
3300021401\|Ga0210393_10347707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1207	Open in IMG/M
3300021401\|Ga0210393_10916552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	711	Open in IMG/M
3300021402\|Ga0210385_10150789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1663	Open in IMG/M
3300021403\|Ga0210397_10224379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1353	Open in IMG/M
3300021403\|Ga0210397_11480297	Not Available	527	Open in IMG/M
3300021404\|Ga0210389_10004406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10955	Open in IMG/M
3300021404\|Ga0210389_10438790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1027	Open in IMG/M
3300021404\|Ga0210389_10741739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300021404\|Ga0210389_10932875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	675	Open in IMG/M
3300021405\|Ga0210387_10443455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1152	Open in IMG/M
3300021406\|Ga0210386_10143978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1989	Open in IMG/M
3300021406\|Ga0210386_10462429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1096	Open in IMG/M
3300021406\|Ga0210386_11570457	Not Available	547	Open in IMG/M
3300021474\|Ga0210390_11177342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300021479\|Ga0210410_11013196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. H61	720	Open in IMG/M
3300021479\|Ga0210410_11408213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	590	Open in IMG/M
3300021479\|Ga0210410_11699585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300022467\|Ga0224712_10228290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	854	Open in IMG/M
3300022557\|Ga0212123_10007734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16862	Open in IMG/M
3300022557\|Ga0212123_10891520	Not Available	525	Open in IMG/M
3300025924\|Ga0207694_11568689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	555	Open in IMG/M
3300025928\|Ga0207700_10151055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1919	Open in IMG/M
3300025929\|Ga0207664_10428078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1179	Open in IMG/M
3300027037\|Ga0209005_1029766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	660	Open in IMG/M
3300027496\|Ga0208987_1012952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1392	Open in IMG/M
3300027817\|Ga0209112_10002277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4842	Open in IMG/M
3300027817\|Ga0209112_10146720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	789	Open in IMG/M
3300027884\|Ga0209275_10067646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1761	Open in IMG/M
3300027895\|Ga0209624_10028028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3578	Open in IMG/M
3300027905\|Ga0209415_10047602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5604	Open in IMG/M
3300027908\|Ga0209006_10749968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	795	Open in IMG/M
3300028800\|Ga0265338_10003415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22403	Open in IMG/M
3300028800\|Ga0265338_10010730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10695	Open in IMG/M
3300028906\|Ga0308309_10255164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1469	Open in IMG/M
3300029943\|Ga0311340_10838247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	771	Open in IMG/M
3300030013\|Ga0302178_10533314	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300030490\|Ga0302184_10189765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	869	Open in IMG/M
3300030503\|Ga0311370_11313054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300030503\|Ga0311370_12250123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300030520\|Ga0311372_10765583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1330	Open in IMG/M
3300030520\|Ga0311372_12547497	Not Available	573	Open in IMG/M
3300030906\|Ga0302314_10330127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1741	Open in IMG/M
3300030906\|Ga0302314_10582503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1176	Open in IMG/M
3300031234\|Ga0302325_12339531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300031616\|Ga0307508_10122393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2205	Open in IMG/M
3300031708\|Ga0310686_102992615	Not Available	1157	Open in IMG/M
3300031708\|Ga0310686_109206387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Ruficoccus → Ruficoccus amylovorans	836	Open in IMG/M
3300031708\|Ga0310686_117921894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2251	Open in IMG/M
3300031708\|Ga0310686_118578801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1001	Open in IMG/M
3300031715\|Ga0307476_10166781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1588	Open in IMG/M
3300031715\|Ga0307476_10883203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	660	Open in IMG/M
3300032770\|Ga0335085_10139316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3062	Open in IMG/M
3300032782\|Ga0335082_10566376	Not Available	998	Open in IMG/M
3300032895\|Ga0335074_10029745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7662	Open in IMG/M
3300032896\|Ga0335075_10007154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17184	Open in IMG/M
3300032898\|Ga0335072_10068504	All Organisms → cellular organisms → Bacteria	4673	Open in IMG/M
3300033475\|Ga0310811_10146658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2976	Open in IMG/M
3300033475\|Ga0310811_10176132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2651	Open in IMG/M
3300033548\|Ga0316216_1006888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.79%
Host-Associated	Host-Associated	11.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Plants	Host-Associated → Plants	10.34%
Aquatic	Environmental → Aquatic	6.03%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.14%
Peat	Environmental → Terrestrial → Peat	8.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.45%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Roots	Host-Associated → Plants → Roots	1.72%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.41%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.31%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.72%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.72%
Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.31%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.45%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.86%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010387	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 k-mer 51	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027037	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033548	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100959893	3300001867	Forest Soil	MDHMSTGTPATDPELDEALARAIRRLIAEAIEAGET
JGI12627J18819_102583832	3300001867	Forest Soil	MEQMEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAESASAAA*
JGIcombinedJ26739_1000704085	3300002245	Forest Soil	MEXVGTGMRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA*
JGIcombinedJ26739_1004926861	3300002245	Forest Soil	MEHMGTAVRATDPELDEALSRAIRRLIAEAIEAGEGD
JGIcombinedJ26739_1005676352	3300002245	Forest Soil	MSDAARATDPELDEALARAIRQLIAEAMEAGADEGA
Ga0070658_100158067	3300005327	Corn Rhizosphere	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSPSAAA*
Ga0070683_1012437112	3300005329	Corn Rhizosphere	MEQMEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDS
Ga0066388_1042848921	3300005332	Tropical Forest Soil	MEQMEHMSAATRATDPELDEALSRAIRQLIAEAIEAGQGDSPSAAA*
Ga0070680_1010613782	3300005336	Corn Rhizosphere	MACGEMEQMEEMSTGARPTDPELDEALSRAIRQLIAGAIEAGKSESASAVA*
Ga0070709_102289342	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEEMSTGARPTDPELDEALSRAIRQLIAGAIEADKAESASAVA*
Ga0070714_1000643002	3300005435	Agricultural Soil	MEEMSTGARPTDPELDEALSRAIRQLIAGAMEADKAESASAVA*
Ga0070713_1014130851	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VEHASSGTRATDPELDEALARAIRQLIAEAIETGEADSAGSASSTAA*
Ga0070734_105184691	3300005533	Surface Soil	MNDAVRATDPELDEALARAIRQLITEAMEAGAGAAAE
Ga0070684_1000343922	3300005535	Corn Rhizosphere	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSA*
Ga0070730_103929992	3300005537	Surface Soil	MEHTDAATGATDPELDEALARAIRQLIAEAIGSGSSSAQRTR*
Ga0070664_1018114842	3300005564	Corn Rhizosphere	MEEMSTGARPTDPELDEALSRAIRQLIAGAIEAGKSES
Ga0070762_102585432	3300005602	Soil	MEHMGNGTRATDPELDEALSRAIRRLIAEAIEAGMGEGDSASAAA*
Ga0070762_102912362	3300005602	Soil	MDHMSTGTWATDPELDDALARAIRQLIAEAIEVGGAAGADSASTAA*
Ga0070716_1001233292	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGAGDSPSAAA*
Ga0079222_101996503	3300006755	Agricultural Soil	MEHMGMGARATDPELDEALSRAIRQLIAEAIEAGAGESPSAVA*
Ga0079221_100618143	3300006804	Agricultural Soil	MEHMGTATRATDPELDEALTRAIRQLIAEAIEAGEGDSPSAAA*
Ga0079219_104009281	3300006954	Agricultural Soil	LGPLSRDLRGMEQMEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSA*
Ga0099794_101677882	3300007265	Vadose Zone Soil	VEHASSGTRATDPELDEALARAIRQLIAEAIETGEADSAGSASPTAA*
Ga0102924_100306115	3300007982	Iron-Sulfur Acid Spring	MARYLVTLRGMERMEHMGNGMRATDPELDEALSRAIRQLIAEAIKAGEGDSASAAA*
Ga0102924_12337402	3300007982	Iron-Sulfur Acid Spring	MERMEHMGNGTRATDPELDEALSRAIRRLIAEAIEAGAGEGDSASAAA*
Ga0105240_108294912	3300009093	Corn Rhizosphere	MEQMEEMSTGARPTDPELDEALSRAIRQLIAGAIEAGKSESAPAVA*
Ga0105240_122667001	3300009093	Corn Rhizosphere	MEQMEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSPSAAA*
Ga0105238_117869582	3300009551	Corn Rhizosphere	MEQMEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGAGDSPSAAA*
Ga0123355_112697411	3300009826	Termite Gut	MEETSTGELPTDPELDEALSRAIRQLIAGAIEQRNAESAAAAV*
Ga0134128_130243011	3300010373	Terrestrial Soil	MEQMEHMSTGTRASDPELDEALSRAIRQLIAEAIEAGEGDSPSAAA*
Ga0136449_1007121543	3300010379	Peatlands Soil	MSNGTRATDPELDEALARAIRQLIAEAIEAGGTESASAAA*
Ga0136821_11308243	3300010387	Sediment	DGTMSNGMRATDPELDEALARAIRQLIAEAIESGGSDPAAAAA*
Ga0134126_100447233	3300010396	Terrestrial Soil	MDEMSTGTRQTDPELDEALSRAIRQLIAGAIEADKAESASAVA*
Ga0134126_116233722	3300010396	Terrestrial Soil	EHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSA*
Ga0126344_13784371	3300010866	Boreal Forest Soil	MEQMEHMGMGTRATDPELDEALSRAIRQLIAEAIEAG
Ga0126359_16315552	3300010869	Boreal Forest Soil	MEQMEHMGTGMQASDPELDEALSRAIRQLIAEAIEAGGAESA*
Ga0126361_103285934	3300010876	Boreal Forest Soil	MEQMEHMSTGTRATDPELDEALSRAIRQLIAEAIEAGEGDAASAAA*
Ga0126350_116376191	3300010880	Boreal Forest Soil	MEQMEHMGMGTRATDPELDEALSRAIRQLIAEAIEAGESDASSAAA*
Ga0137384_111346631	3300012357	Vadose Zone Soil	MEQMEHMSIGTRATDPELDEALSRAIRQLIAEAIEAGEGDSPSPRP*
Ga0137413_100750884	3300012924	Vadose Zone Soil	MEHMGTGVRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAALAAAGRPC
Ga0137407_121552722	3300012930	Vadose Zone Soil	MEQMEHMSTGTRATDPELDEALSRAIRQLIAEAIEAGEGDSASTAALADAQETGH*
Ga0157371_105377401	3300013102	Corn Rhizosphere	MACGEMEQMEEMSTGARPTDPELDEALSRAIRQLIAGAIEAGKSESAPAVA*
Ga0157372_107967562	3300013307	Corn Rhizosphere	MEQMEHMGMGARATDPELDDALSRAIRQLIAEAIEAGEGDSPSAAA*
Ga0181531_101560882	3300014169	Bog	STGTWATDPELDDALARAIRQLIAEAIEVSGAAGADSASTAA*
Ga0181537_100326561	3300014201	Bog	MDHMSTGTWATDPELDDALARAIRQLIAEAIEVSGAAGADSASTAA*
Ga0182024_110420401	3300014501	Permafrost	MEQMEHMSIATRATDPELDEALSRAIRQLIAEAIEAGEGDAASAAA*
Ga0137403_104095981	3300015264	Vadose Zone Soil	MEQMEHMSTGTRATDPELDEALSRAIRQLIAEAIEAGEG
Ga0193729_12187122	3300019887	Soil	MEHMSTGTRATDPELDEALSRAIRQLIAEAIEAGEGDSTSTAALADAQETGH
Ga0206356_101243743	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGDSPSAAA
Ga0206354_109463783	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MEQMEEMSTGARPTDPELDEALSRAIRQLIAGAIEAGKSESAPAVA
Ga0179596_100098954	3300021086	Vadose Zone Soil	MEHMGTGVRATDPELDEALSRAIRQLIAEAIEAGEGDS
Ga0179596_103701682	3300021086	Vadose Zone Soil	ARYLVTWRGMDPMEHMGTGVRATDPELDEALSRAIRQLIAEAVEAGEGDAASAAA
Ga0210400_114341701	3300021170	Soil	MEHVGSGMRATDRELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0210396_104864002	3300021180	Soil	MEHMGNGTRATDPELDEALSRAIWRLIAEAIEAGVGEGDSASAAA
Ga0210396_106250651	3300021180	Soil	MSTGNGATDPELDEALARAIRQLIAEAIEGGRAGEAVSASAAA
Ga0210396_115756451	3300021180	Soil	QATDPELDEALSRAIRQLIAEAIEAGGAESASAAA
Ga0210388_104115242	3300021181	Soil	MEDVGTGMRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0210393_103477073	3300021401	Soil	MEHMGTGVRATDPELDEALSRAIRRLIAEAIEAGEGDSASAAA
Ga0210393_109165522	3300021401	Soil	MEQMEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAGSASTAA
Ga0210385_101507891	3300021402	Soil	MEHMGNGTRATDPELDEALSRAIRRLIAEAIEAGVGEGDSASAAA
Ga0210397_102243792	3300021403	Soil	MEHMSTGTRATDPELDEALSRAIRQLIAEAIEAGEGDSSSAAALAGARETGHSR
Ga0210397_114802971	3300021403	Soil	LVTCRGMEQMEHMGTGMQASDPELDEALSRAIRQLIAEAIEAGGAEPA
Ga0210389_1000440610	3300021404	Soil	MKHMSTGTPATDTELDEALARAIRQLIAEAVEAGE
Ga0210389_104387901	3300021404	Soil	MEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAESASTAA
Ga0210389_107417392	3300021404	Soil	MQQMEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAGSASTAA
Ga0210389_109328752	3300021404	Soil	MEDMSTGTRPTDPELDEALSRAIRQLIAGAVEAGQAESASSAA
Ga0210387_104434552	3300021405	Soil	MEHMGNGTRATDPELDEALSRAIRRLIAEAIEAGMGEGDSASAAA
Ga0210386_101439784	3300021406	Soil	MEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAESASAAA
Ga0210386_104624292	3300021406	Soil	MDHMSTGTPATDPELDEALARAIRRLIAEAVEAGETGSASAAA
Ga0210386_115704571	3300021406	Soil	MSTGNGATDPELDEALARAIRQLIAEAIEGGRAGEAGSASAAA
Ga0210390_111773421	3300021474	Soil	MERMEHVGNGMRATDRELDEALSRAIRQLIADAIEAGEGDSASAAA
Ga0210410_110131961	3300021479	Soil	EQMEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAESASAAA
Ga0210410_114082132	3300021479	Soil	MEHMGTGVRATDPELDEALSRAIRRLIAEAIEAGEGDSASAAALAAAGRPC
Ga0210410_116995851	3300021479	Soil	SRDLRGMEQMEHMGTGMQATDPELDEALSRAIRQLIAEAIEAGGAESASTAA
Ga0224712_102282901	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGEGD
Ga0212123_100077345	3300022557	Iron-Sulfur Acid Spring	MARYLVTLRGMERMEHMGNGMRATDPELDEALSRAIRQLIAEAIKAGEGDSASAAA
Ga0212123_108915202	3300022557	Iron-Sulfur Acid Spring	MEHMGNGTRATDPELDEALSRAIRRLIAEAIEAGAGEGDSASAAA
Ga0207694_115686891	3300025924	Corn Rhizosphere	MEQMEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGAGDSPSAAA
Ga0207700_101510553	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MEEMSTGARPTDPELDEALSRAIRQLIAGAMEADKAESASAVA
Ga0207664_104280782	3300025929	Agricultural Soil	MEHMGMGTRATDPELDEALTRAIRQLIAEAIEAGAGDSPSAAA
Ga0209005_10297662	3300027037	Forest Soil	MEHVGTGMRATDPELDEALSRAIRQLIAEAIEAGEGDSAS
Ga0208987_10129523	3300027496	Forest Soil	MERMEHVGNAMRVTDPELDEALSRAIRQLIAEAIEAGGGDSASAAA
Ga0209112_100022774	3300027817	Forest Soil	MDHMSTGTPATDPELDEALARAIRRLIAEAIEAGGTGSASAAA
Ga0209112_101467201	3300027817	Forest Soil	MEHVGTGMRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0209275_100676463	3300027884	Soil	MDHMSTGTWATDPELDDALARAIRQLIAEAIEVGGAAGADSASTAA
Ga0209624_100280283	3300027895	Forest Soil	MEHVGNGMRATDRELDEALSRAIRQLIAEAIEAGEAGEGNSASAAA
Ga0209415_100476025	3300027905	Peatlands Soil	MSNGTRATDPELDEALARAIRQLIAEAIEAGGTESASAAA
Ga0209006_107499682	3300027908	Forest Soil	MEQMGHMSTESRATDPELDDALARAIRQLIAEAMDAGSAPESTA
Ga0265338_1000341511	3300028800	Rhizosphere	MEHISAGTRATDPELDEALARAIRHLIAEAIEAGTADAPSAS
Ga0265338_100107309	3300028800	Rhizosphere	MENISAGTRATDPELDEALARAIRHLIAEAIEAGTAEAPSAS
Ga0308309_102551643	3300028906	Soil	MEHMGTGVRATDPELDEALSRAIRRLIAEAIEAGEGDSASAAALAAGR
Ga0311340_108382472	3300029943	Palsa	MEHMNAETRAGQATDPELDGALARAIRQLIAEAIESGG
Ga0302178_105333141	3300030013	Palsa	RATDPELDDALARAIRQLIAEAMDAGSAPESKTSAA
Ga0302184_101897651	3300030490	Palsa	MGTGARATDPELDGALARAIRQLIAEAVSAGGESQPGE
Ga0311370_113130542	3300030503	Palsa	MEQMGHMSTDSRATDPELDDALARAIRQLIAEAMDAGSAPESKTSAA
Ga0311370_122501231	3300030503	Palsa	MSTGTRDSEPELDEALASAIRSLIADAIESGAVDAPAATA
Ga0311372_107655832	3300030520	Palsa	MEQMRHMSTESRATDPELDDALARAIRQLIAEAIEAGTSESTTSAA
Ga0311372_125474972	3300030520	Palsa	MEPISAGTRTTDPELDEALARAIRSLIADAIEAGTADAPSAAA
Ga0302314_103301271	3300030906	Palsa	PRKRGMEQMGHMSTDSRATDPELDDALARAIRQLIAEAMDAGSAPESKTSAA
Ga0302314_105825032	3300030906	Palsa	MRHMSTESRATDPELDDALARAIRQLIAEAIEAGTSESTTSAA
Ga0302325_123395312	3300031234	Palsa	IRGMEQMRHMSTESRATDPELDDALARAIRQLIAEAIEAGTSESTTSAA
Ga0307508_101223931	3300031616	Ectomycorrhiza	VEHATSGTRATDPELDEALARAIRQLIAEAIETGEADSAGSASPTAA
Ga0310686_1029926152	3300031708	Soil	MEHMSTVMRATDPELDEALSRAIRQLIAEAVEAGEAGEGDAASAAA
Ga0310686_1092063872	3300031708	Soil	AGDGAMEHMSTVMRATDPELDEALSRAIRQLIAEAVEAGEGDSASAAA
Ga0310686_1179218942	3300031708	Soil	MEQMGHMSTESRATDPELDDALARAIRQLIAEAMEAGTTEPRTSAA
Ga0310686_1185788011	3300031708	Soil	MEHVGNGMRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0307476_101667812	3300031715	Hardwood Forest Soil	MEHVGNGMRATDLELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0307476_108832031	3300031715	Hardwood Forest Soil	MEHMGNGTRATDPELDEALSRAIWRLIAEAIEAGAGEGDS
Ga0335085_101393164	3300032770	Soil	MEHMSTGMRATDPELDEALSRAIRQLIAEAIEAGEGDSAS
Ga0335082_105663763	3300032782	Soil	MEQMEHMSAGTRATDPELDEALSRAIRQLIAEAIEAGEGDSPSAAA
Ga0335074_100297457	3300032895	Soil	MDYTSAETRATDPELDEALARAIRQLIAEAIEVGTAGS
Ga0335075_100071544	3300032896	Soil	MEHMGNGTRATDPELDEALSRAIRQLIAEAIEAGEGDSASAAA
Ga0335072_100685041	3300032898	Soil	QMDYTSAETRATDPELDEALARAIRQLIAEAIEVGTAGS
Ga0310811_101466584	3300033475	Soil	MDEMSAGTRPTDPELDEALSKAIRLLIAGAIEADKAESASVVA
Ga0310811_101761323	3300033475	Soil	MEEMSTGARPTDPELDEALSRAIRQLIAGAIEADKAESASAVA
Ga0316216_10068881	3300033548	Roots	MSTGTWATDPELDDALARAIRQLIAEAIEVGGAAGADSASTAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079132

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences