Basic Information | |
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Family ID | F079121 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 41 residues |
Representative Sequence | GMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 99.14 % |
% of genes from short scaffolds (< 2000 bps) | 90.52 % |
Associated GOLD sequencing projects | 102 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.59 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (93.966 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.862 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.345 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.517 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.59 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Peatland Bog Forest Soil Bog Freshwater Sediment Soil Thermal Springs Groundwater Sediment Watersheds Soil Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Rice Paddy Soil Tropical Peatland Bog Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Biofilm Corn Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ26739_1009400043 | 3300002245 | Forest Soil | IKSLEDQLDRCLNESDPLLRETARAAKRRLEALAAKP* |
JGI25382J37095_100732983 | 3300002562 | Grasslands Soil | AIGTFGMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA* |
JGI25615J43890_10873801 | 3300002910 | Grasslands Soil | GTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTAAKP* |
Ga0062386_1002199081 | 3300004152 | Bog Forest Soil | AIGFFRIQTLGGELERCLNHADALLRETARAAKLRLEASETEL* |
Ga0062386_1010929992 | 3300004152 | Bog Forest Soil | AIGFFRIQTLGGELERCLNHRDALLRETARAAKHRLDASETEL* |
Ga0062595_1000307864 | 3300004479 | Soil | GTFGLLTLESELNRCLSDSDPLLRETARAAKLRLEARAAKA* |
Ga0058899_113747612 | 3300004631 | Forest Soil | LGMKSLEVELNRCLEHPDPLLRETARAAKLRLDALALKS* |
Ga0066675_108139451 | 3300005187 | Soil | CGAYAIGTFGLLTLESELNRCLSDSDPLLRETARAAKLRLEARAAKA* |
Ga0070710_106353682 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | TFAITSLEGELGPCLEHPDPLLRETARAAKIRLQSLGANR* |
Ga0070707_1004659852 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | AYAIGTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGAAAKA* |
Ga0070699_1019156761 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | TLGMNSLQVELDKCLEHPDPLLRETARAAKLRLVALAAKS* |
Ga0066661_100842464 | 3300005554 | Soil | KSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA* |
Ga0066704_100305055 | 3300005557 | Soil | IKSLEGQLDGCLNEADPLLRETARAAKLRLEALAAKS* |
Ga0075019_102587771 | 3300006086 | Watersheds | IGSFQMRSLAGELDRCLGHADPLLRETARAAKLRLTNANENS* |
Ga0070716_1003801811 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | GMKSLEAELNRCLEHPDPLLRETARTAKLRLEALAANS* |
Ga0075014_1001321281 | 3300006174 | Watersheds | IKSLAGELGQCLEHPDPLLRETALAAKLRLEALAADP* |
Ga0068871_1017417372 | 3300006358 | Miscanthus Rhizosphere | HAVGVFGLRSLEGQLNRLLNDSDPLLRETARASKLRLEALVTRSET* |
Ga0099791_105183732 | 3300007255 | Vadose Zone Soil | GIKSLEDHLDRCLNESDPLLRETARAANLRLEALATKS* |
Ga0099791_106151442 | 3300007255 | Vadose Zone Soil | GIRSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0099793_103605033 | 3300007258 | Vadose Zone Soil | LEDQLDRCLTESDPLLRETARAAKLRLEALAAKS* |
Ga0099794_103879861 | 3300007265 | Vadose Zone Soil | GTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGPVAKA* |
Ga0066710_1023239431 | 3300009012 | Grasslands Soil | IGSFGLKSLEGELNRCLNDSDPLLRETARAAKLRLETLAAKA |
Ga0099827_118814532 | 3300009090 | Vadose Zone Soil | GTFGLKSLEGELHRCLNDTDPLLRETARAAKVRLEAAVVKRVDIRS* |
Ga0099792_112169582 | 3300009143 | Vadose Zone Soil | AYAIGALGIKSLENQLDRCLNESDPLLRETARAAKLRLEAPAAKP* |
Ga0105242_116686482 | 3300009176 | Miscanthus Rhizosphere | YAVGALGLRSLEDHLNRCLNDSDPLLRETARAAKLRLEALVTKA* |
Ga0105237_122986781 | 3300009545 | Corn Rhizosphere | GTFGLKSLEGELQRCLNDADPLLRETARAAKMRLEAAAVKGVDIRS* |
Ga0126382_117842982 | 3300010047 | Tropical Forest Soil | ALGLKSLEMELNRCLKHPDPLLRETARTAKHRLEMHTTNL* |
Ga0126322_10729392 | 3300010143 | Soil | GTFAITSLEQKLTECLEHSDPLLRETARAAKLRLQALASQP* |
Ga0126320_10770122 | 3300010146 | Soil | CGAYAIGTFAITSLEDKLGECLEHPDPLLRETARAAKLRLQALSPQS* |
Ga0134071_102172943 | 3300010336 | Grasslands Soil | IGTLGIKSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0074045_106944511 | 3300010341 | Bog Forest Soil | ITSLEAELERCLQDPDPLLRETARAAKLRLEALTRES* |
Ga0126372_110630601 | 3300010360 | Tropical Forest Soil | AYAIGNLRMRSLEAQLNRCLQDPDPLLRETARVAKQRLAESATA* |
Ga0134066_101281582 | 3300010364 | Grasslands Soil | GMKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA* |
Ga0136847_126703891 | 3300010391 | Freshwater Sediment | LKTLESALDACLNHPDPLLRETARQAKLRLAALTEPTTA* |
Ga0150983_103962561 | 3300011120 | Forest Soil | LGIRSLEDQLDRCLNGSDPLLRETARAAKLRLEALAAKS* |
Ga0150983_162473212 | 3300011120 | Forest Soil | AYAIGTLGMKSLEAELSRCLEHPDPLLRETARAAKLRLEALPAKS* |
Ga0137392_101295226 | 3300011269 | Vadose Zone Soil | KSLEGQLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0137392_105723631 | 3300011269 | Vadose Zone Soil | AIGTFGLKSLESDLNRCLNDSDPLLRETARAAKLRLAALVANP* |
Ga0137393_102139561 | 3300011271 | Vadose Zone Soil | IKSLEGELNRCLNDSDPLLRETARAAKQRLEQLAGKAP* |
Ga0137393_117792822 | 3300011271 | Vadose Zone Soil | GAYAIGTFGMKSLEGELNRCLNDSDSLLRETARAAKLRLDALAAKA* |
Ga0137388_109096111 | 3300012189 | Vadose Zone Soil | KSLEDQLDRCLNESDPLLRETARAAKLRLEALTAKS* |
Ga0137365_109931101 | 3300012201 | Vadose Zone Soil | SLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0137363_101700414 | 3300012202 | Vadose Zone Soil | AYAIGALGIKSLENQLDRCLNESDPLLRETARAAKLRLEAPAVKP* |
Ga0137362_111510431 | 3300012205 | Vadose Zone Soil | AYAIGTFGLKSLEFELDRCLNDSDPLLRETARAAKLRLEGPAAKA* |
Ga0137362_112523092 | 3300012205 | Vadose Zone Soil | MKSLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA* |
Ga0137362_112920511 | 3300012205 | Vadose Zone Soil | TLGIKSLEDQLDRCLNESDPLLRETARAAKLRLEAIAAKP* |
Ga0137376_106914792 | 3300012208 | Vadose Zone Soil | SFGMKSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA* |
Ga0137386_102005023 | 3300012351 | Vadose Zone Soil | AIGNLRMKSLEPQLNHCLDDPDPLLRETARAAKQRLQEFAKA* |
Ga0137390_110812011 | 3300012363 | Vadose Zone Soil | KSLEDRLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0137358_103747103 | 3300012582 | Vadose Zone Soil | GTLGIKSLESQLDRCLNESDPLLRETARAAKLRLDALAAKP* |
Ga0137358_106397811 | 3300012582 | Vadose Zone Soil | ISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP* |
Ga0137394_102806453 | 3300012922 | Vadose Zone Soil | LEGQLDGCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0137413_104585123 | 3300012924 | Vadose Zone Soil | AYAIGTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTAAKP* |
Ga0137416_100678501 | 3300012927 | Vadose Zone Soil | GTFGLKSLECELDRCLNDSDPLLRETARAAKLRLAGSAAKA* |
Ga0137410_100944421 | 3300012944 | Vadose Zone Soil | IKSLEVELNRCLEHPDPLLRETARAAKLRLEALAAKS* |
Ga0164303_105171612 | 3300012957 | Soil | KSLEPELNRCLEHPDPLLRETARAAKVRLEALAANS* |
Ga0164301_108639252 | 3300012960 | Soil | GTLGIKSLADQLDRCLNESDPLLRETARAAKLRLEALAAKS* |
Ga0164302_117931612 | 3300012961 | Soil | LKSLETQLDRCLNDSDPLVRETARAAKLRLEALATKM* |
Ga0126369_125226852 | 3300012971 | Tropical Forest Soil | IGTLGIKSLEGQLDRCLNESDPLLRETARAAKLRQEALAAKS* |
Ga0134079_102647232 | 3300014166 | Grasslands Soil | SLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA* |
Ga0181534_106307062 | 3300014168 | Bog | LEEELKRCLEDPDPLLRETARAAKLRLEALTPES* |
Ga0157376_115669801 | 3300014969 | Miscanthus Rhizosphere | IGTFGLKSLEGELQRCLNDADPLLRETARAAKMRLEAAAVKGVDIRS* |
Ga0157376_119604931 | 3300014969 | Miscanthus Rhizosphere | LGIRSLEGELDRCMNDPDPLLRETARAAKVKLDQLTKAEIA* |
Ga0134072_100911001 | 3300015357 | Grasslands Soil | KSLEAELNRCLEHPDPLLRETARTAKLRLQALAANS* |
Ga0182040_116716081 | 3300016387 | Soil | IKSLEGELNRCLNDSDPLLRETARAAKLHLQEIVAKA |
Ga0182037_113338241 | 3300016404 | Soil | PGIKALEMALTHCLEHPAPLLRETARTAKLRLETLRARS |
Ga0187821_100180364 | 3300017936 | Freshwater Sediment | AYAVGALGLKSLEGELNRCLNDSDPLLRETARAAKLRLEALIEKA |
Ga0187821_102025812 | 3300017936 | Freshwater Sediment | GAYAIGSLGLKSLEDQLNQCLDHPDALLRETARAAKLRLGPQSQSAGA |
Ga0187822_101405672 | 3300017994 | Freshwater Sediment | VGALGLKSLEGELNRCLNDSDPLLRETARAAKLRLEALIEKA |
Ga0187863_108228092 | 3300018034 | Peatland | SCGAYAIGMFGMRSLEGELNRCLNDTDPLLREAARAAKQLLEALVTKA |
Ga0184615_100486324 | 3300018059 | Groundwater Sediment | TLGLRELEAELDLCLEHADPLLRETARQAKLRLAAGPDVQRGL |
Ga0187771_107541321 | 3300018088 | Tropical Peatland | AYAIGTFAVRSLEGELSSCLDHPDPLLRETARAAKLRLEALAPSVRDRVAS |
Ga0066669_108693121 | 3300018482 | Grasslands Soil | YAIGTLGMKSLEAELNRCLEHPDPLLRETARTAKRRLEALAANS |
Ga0187852_11148922 | 3300019082 | Peatland | SCGAYAIGNFGLKSLEGELNRCLNDTDPLLRETARTAKLRLEALATKA |
Ga0137408_10313872 | 3300019789 | Vadose Zone Soil | GMKASEGELNRCLNDSDPLLRETARAAKLRLDALAAKA |
Ga0193749_10279701 | 3300020010 | Soil | YAIGTLGMISLQSELDKCLEHPDPLLRETARAAKLRLETAAKP |
Ga0179592_100860433 | 3300020199 | Vadose Zone Soil | AYAIGTLGIKSLEEQLDRCLNESDPLLRETARAAKLRLDAPVAKP |
Ga0210406_101643081 | 3300021168 | Soil | AIGTFGLKSLEYELDRCLNDSDPLLRETARAAKLRL |
Ga0210408_103056001 | 3300021178 | Soil | GIKSLEGELHRCLNDADPLLRETARAAKLRLDAVAKGVEIE |
Ga0210396_104170072 | 3300021180 | Soil | AYAIGTFGIKSLEGELHRCLNDADPLLRETARAAKLRLDAVAKGVEIE |
Ga0210410_101292951 | 3300021479 | Soil | LHRCLNDADPLLRETARAAKVRLEAAVVKSVDIRS |
Ga0242648_10547242 | 3300022506 | Soil | GIKSLEHQLDQCLNESDPLLRETARAAKLRLDALAAKP |
Ga0222728_10721652 | 3300022508 | Soil | GIKSLEHQLDRCLNESDPLLRETARAAKLRLDALAAKP |
Ga0242659_10964452 | 3300022522 | Soil | LGMKSLEAELSRCLEHPDPLLRETARAAKLRLEALTAKS |
Ga0242655_102267002 | 3300022532 | Soil | GAYAIGSLGIKSLEHQLDQCLNEADPLLRETARAAKLRLDALAAKP |
Ga0212128_108194932 | 3300022563 | Thermal Springs | GAYAIGSLGLKSLELHLDGCLSHSDPLLRETARQAKLRLATAPGTSD |
Ga0242665_100379142 | 3300022724 | Soil | LGMNSLEGELNRCLNDPDPLLRETARAAKQRLEQFAKA |
Ga0242654_102381512 | 3300022726 | Soil | AIGALGIKSLEDQLDRCLNESDPLLRETARAAKLRLEAPAGKS |
Ga0247681_10324492 | 3300024310 | Soil | ALEMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP |
Ga0209109_101186153 | 3300025160 | Soil | SLESALDSCLEHPDPLLRETARHAKQKLTALPDPATA |
Ga0209002_103708301 | 3300025289 | Soil | LRSLEPEIDRCLNHPDPLLRETARQAKLRLAALAPAS |
Ga0207646_102758823 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | SLEGELNRCLNDSDPLLRETARAAKLRLDALAAKA |
Ga0207686_114374001 | 3300025934 | Miscanthus Rhizosphere | YAVGALGLRSLEDHLNRCLNDSDPLLRETARAAKLRLEALVTKA |
Ga0207709_103556791 | 3300025935 | Miscanthus Rhizosphere | VGALGLRSLEDQLNRCLNDTDPLLRETARAAKLRLEALVTKA |
Ga0208527_10188642 | 3300025990 | Rice Paddy Soil | GLTSLEDQLNQCLDHPDALLRETARAAKLRLGPQSQSAGA |
Ga0207702_116951061 | 3300026078 | Corn Rhizosphere | GVFGLRSLEGQLNRLLNDSDPLLRETARASKLRLEALVTRSET |
Ga0209470_12695261 | 3300026324 | Soil | GTLGIKSLEGELNRCLNDSDPLLRETARAAKQRLEEFAAKA |
Ga0257164_10031943 | 3300026497 | Soil | KSLEGQLDGCLNESDPLLRETARAAKLRLEALAAKP |
Ga0209474_104250011 | 3300026550 | Soil | AIGTLGMKSLEAELNRCLEHPDPLLRETARTAKLRLEALAANS |
Ga0209106_10738761 | 3300027616 | Forest Soil | GIRSLEDQLDRCLEESDPLLRETARAAKLRLEALAAKS |
Ga0209772_101617452 | 3300027768 | Bog Forest Soil | IGNFGLKSLEGELNRCLNDTDPLLRETARAAKLRLEALVTKT |
Ga0209180_104113662 | 3300027846 | Vadose Zone Soil | SLEGELHRCLNDADPLLRETARAAKVRLEAAVVKSVDIGS |
Ga0209590_103501761 | 3300027882 | Vadose Zone Soil | YAIGAFGLKSLEGELNRCLNDGDPLLRETARAAKLRLEALATKA |
Ga0247662_10511302 | 3300028293 | Soil | AIGALEMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP |
Ga0137415_100204426 | 3300028536 | Vadose Zone Soil | GSLGIRSLEDQLDRCLNESDPLLRETARAAKLRLEALAAKS |
Ga0311339_106539543 | 3300029999 | Palsa | SLEGELNRCLNDADPLLRETARAAKMRLEALVTKAVPSVK |
Ga0170834_1134911741 | 3300031057 | Forest Soil | MISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP |
Ga0170824_1256920702 | 3300031231 | Forest Soil | LGMISLQTELDKCLEHPDPLLRETARAAKLRLGAAAKP |
Ga0302326_100634009 | 3300031525 | Palsa | AIGNFGLKSLEGELNRCLNDADPLLRETARAAKMRLEALVTKAVPSVK |
Ga0247727_110000341 | 3300031576 | Biofilm | GAYAIGSLGLRSLAHELEACLVHADPLLRETARQAKLRLAAASAS |
Ga0318561_101046791 | 3300031679 | Soil | AYAIGSFGIRSLSAELEHCFEHPDPLLRETARAAKLRLAEQS |
Ga0318567_102563753 | 3300031821 | Soil | KFAIKSLEAELGKCLEHPDPLLRETARVAKLRLDAVAVDS |
Ga0310916_109767331 | 3300031942 | Soil | YAIGKFVIKSLETELGRCLQHPDTLLRETARAAKLRLQAVAADS |
Ga0307470_105172311 | 3300032174 | Hardwood Forest Soil | GAYAIGTLGMISLQTELDKCLEHPDPLLRETARAAKLRLGTEAKP |
Ga0335081_123714902 | 3300032892 | Soil | GMKSLEVELNRCLSDPDPLLRETARVAKRRLEQFAKV |
Ga0335083_110348822 | 3300032954 | Soil | GAYAIGSLGMVTLEKELDRCLDHQDPLLRETARAAKLRLAMHR |
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