Metagenome / Metatranscriptome Family F079112

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079112
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	118 residues
Representative Sequence	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.62 %
% of genes near scaffold ends (potentially truncated)	31.03 %
% of genes from short scaffolds (< 2000 bps)	75.86 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.793 % of family members)
Environment Ontology (ENVO)	Unclassified (25.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.517 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.33% β-sheet: 18.67% Coil/Unstructured: 54.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00083	Sugar_tr	6.90
PF13177	DNA_pol3_delta2	6.03
PF00069	Pkinase	4.31
PF13937	DUF4212	3.45
PF00072	Response_reg	2.59
PF07690	MFS_1	2.59
PF01544	CorA	2.59
PF00474	SSF	1.72
PF02518	HATPase_c	1.72
PF13432	TPR_16	1.72
PF00582	Usp	1.72
PF03401	TctC	0.86
PF00534	Glycos_transf_1	0.86
PF06965	Na_H_antiport_1	0.86
PF01717	Meth_synt_2	0.86
PF00005	ABC_tran	0.86
PF06930	Obsolete Pfam Family	0.86
PF10335	DUF294_C	0.86
PF04893	Yip1	0.86
PF00202	Aminotran_3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	17.24
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	2.59
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.86
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.86
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.52 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	81.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.72 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	54.31 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	54.31 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	5.17 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	54.31 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	4.31 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	54.31 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	4.31 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	54.31 %
Burkholderia cenocepacia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	4.31 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000881\|JGI10215J12807_1017248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6966	Open in IMG/M
3300000891\|JGI10214J12806_11157042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	594	Open in IMG/M
3300000891\|JGI10214J12806_12253655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	644	Open in IMG/M
3300003319\|soilL2_10145898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1407	Open in IMG/M
3300004156\|Ga0062589_101370974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	688	Open in IMG/M
3300004463\|Ga0063356_104056172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	630	Open in IMG/M
3300005171\|Ga0066677_10635131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	603	Open in IMG/M
3300005172\|Ga0066683_10388441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	864	Open in IMG/M
3300005295\|Ga0065707_10460693	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005295\|Ga0065707_10984987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	518	Open in IMG/M
3300005330\|Ga0070690_100061219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2424	Open in IMG/M
3300005332\|Ga0066388_100237806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2457	Open in IMG/M
3300005367\|Ga0070667_101464989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	641	Open in IMG/M
3300005440\|Ga0070705_100131963	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300005526\|Ga0073909_10113595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1087	Open in IMG/M
3300005545\|Ga0070695_100949984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	697	Open in IMG/M
3300005558\|Ga0066698_10853897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	586	Open in IMG/M
3300005561\|Ga0066699_10823399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300005578\|Ga0068854_100471240	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300005713\|Ga0066905_100341411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1193	Open in IMG/M
3300005841\|Ga0068863_101200265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	764	Open in IMG/M
3300006046\|Ga0066652_101288143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	690	Open in IMG/M
3300006058\|Ga0075432_10369772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	612	Open in IMG/M
3300006173\|Ga0070716_100520770	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300006755\|Ga0079222_10834122	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300006844\|Ga0075428_100000572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	37550	Open in IMG/M
3300006844\|Ga0075428_101458979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	717	Open in IMG/M
3300006846\|Ga0075430_101054161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	670	Open in IMG/M
3300006847\|Ga0075431_100272693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1714	Open in IMG/M
3300006847\|Ga0075431_100756886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	947	Open in IMG/M
3300006854\|Ga0075425_100732613	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300006871\|Ga0075434_101793124	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300006894\|Ga0079215_10863730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	642	Open in IMG/M
3300006953\|Ga0074063_13723838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	981	Open in IMG/M
3300007004\|Ga0079218_11883945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	675	Open in IMG/M
3300007076\|Ga0075435_100932532	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300007265\|Ga0099794_10017473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3198	Open in IMG/M
3300009012\|Ga0066710_100166010	All Organisms → cellular organisms → Bacteria → Proteobacteria	3096	Open in IMG/M
3300009012\|Ga0066710_100961621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1317	Open in IMG/M
3300009094\|Ga0111539_12035127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	666	Open in IMG/M
3300009094\|Ga0111539_12253407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	632	Open in IMG/M
3300009100\|Ga0075418_11307014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	786	Open in IMG/M
3300009137\|Ga0066709_100976537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1239	Open in IMG/M
3300009143\|Ga0099792_10047667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2074	Open in IMG/M
3300009147\|Ga0114129_10337938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1998	Open in IMG/M
3300009597\|Ga0105259_1047095	All Organisms → cellular organisms → Bacteria → Proteobacteria	956	Open in IMG/M
3300009610\|Ga0105340_1005988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4967	Open in IMG/M
3300009802\|Ga0105073_1035987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	601	Open in IMG/M
3300010046\|Ga0126384_10240417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1458	Open in IMG/M
3300010397\|Ga0134124_10046645	All Organisms → cellular organisms → Bacteria	3634	Open in IMG/M
3300010397\|Ga0134124_10152920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2060	Open in IMG/M
3300010403\|Ga0134123_11140005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	806	Open in IMG/M
3300011107\|Ga0151490_1252262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	648	Open in IMG/M
3300011119\|Ga0105246_10077913	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300011439\|Ga0137432_1002561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5201	Open in IMG/M
3300011442\|Ga0137437_1013495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2808	Open in IMG/M
3300012212\|Ga0150985_113606437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	660	Open in IMG/M
3300012483\|Ga0157337_1026754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	567	Open in IMG/M
3300012519\|Ga0157352_1074977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	555	Open in IMG/M
3300012922\|Ga0137394_10011602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6914	Open in IMG/M
3300012957\|Ga0164303_10152715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1224	Open in IMG/M
3300012984\|Ga0164309_11960215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	502	Open in IMG/M
3300012989\|Ga0164305_10492717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	962	Open in IMG/M
3300013306\|Ga0163162_10048243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4266	Open in IMG/M
3300014876\|Ga0180064_1027603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1101	Open in IMG/M
3300014969\|Ga0157376_10294878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1533	Open in IMG/M
3300015371\|Ga0132258_10170811	All Organisms → cellular organisms → Bacteria → Proteobacteria	5242	Open in IMG/M
3300015371\|Ga0132258_13517169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1073	Open in IMG/M
3300015373\|Ga0132257_100063616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4150	Open in IMG/M
3300015374\|Ga0132255_100054543	All Organisms → cellular organisms → Bacteria → Proteobacteria	5226	Open in IMG/M
3300018027\|Ga0184605_10003555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5412	Open in IMG/M
3300018027\|Ga0184605_10042764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1908	Open in IMG/M
3300018083\|Ga0184628_10011783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4226	Open in IMG/M
3300018422\|Ga0190265_10348131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1567	Open in IMG/M
3300018429\|Ga0190272_11908790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	625	Open in IMG/M
3300018469\|Ga0190270_12244260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	606	Open in IMG/M
3300020202\|Ga0196964_10353863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	703	Open in IMG/M
3300025914\|Ga0207671_10689351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	813	Open in IMG/M
3300025931\|Ga0207644_11651654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	537	Open in IMG/M
3300025936\|Ga0207670_10544562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	947	Open in IMG/M
3300026088\|Ga0207641_11302254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	727	Open in IMG/M
3300027032\|Ga0209877_1020278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300027533\|Ga0208185_1018836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1716	Open in IMG/M
3300027674\|Ga0209118_1175712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	585	Open in IMG/M
3300027787\|Ga0209074_10133031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	877	Open in IMG/M
3300027821\|Ga0209811_10005788	All Organisms → cellular organisms → Bacteria → Proteobacteria	3969	Open in IMG/M
3300027873\|Ga0209814_10454287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	566	Open in IMG/M
3300027880\|Ga0209481_10002024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	8278	Open in IMG/M
3300027903\|Ga0209488_10013073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6064	Open in IMG/M
3300027907\|Ga0207428_11036109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	575	Open in IMG/M
3300028812\|Ga0247825_10060524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2524	Open in IMG/M
3300031184\|Ga0307499_10002993	All Organisms → cellular organisms → Bacteria → Proteobacteria	3932	Open in IMG/M
3300031199\|Ga0307495_10196715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	551	Open in IMG/M
3300031226\|Ga0307497_10012814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2425	Open in IMG/M
3300031538\|Ga0310888_10733983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	608	Open in IMG/M
3300031562\|Ga0310886_10108047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1399	Open in IMG/M
3300031720\|Ga0307469_12535113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	501	Open in IMG/M
3300031740\|Ga0307468_100035305	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300031740\|Ga0307468_100150679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1493	Open in IMG/M
3300031740\|Ga0307468_101540959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	618	Open in IMG/M
3300031820\|Ga0307473_10022973	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300031820\|Ga0307473_10270414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1053	Open in IMG/M
3300031858\|Ga0310892_10794093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	656	Open in IMG/M
3300031892\|Ga0310893_10458550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	567	Open in IMG/M
3300031943\|Ga0310885_10093129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1353	Open in IMG/M
3300031944\|Ga0310884_10353573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	833	Open in IMG/M
3300032012\|Ga0310902_10418947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	857	Open in IMG/M
3300032075\|Ga0310890_10168852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1468	Open in IMG/M
3300032174\|Ga0307470_10092167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1709	Open in IMG/M
3300032179\|Ga0310889_10124251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1128	Open in IMG/M
3300032180\|Ga0307471_100292005	All Organisms → cellular organisms → Bacteria → Proteobacteria	1712	Open in IMG/M
3300032180\|Ga0307471_100355524	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300032205\|Ga0307472_100801566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	860	Open in IMG/M
3300032205\|Ga0307472_101524593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	654	Open in IMG/M
3300032211\|Ga0310896_10406122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
3300033550\|Ga0247829_10965349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	708	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.41%
Host-Associated	Host-Associated	27.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.66%
Plants	Host-Associated → Plants	27.59%
Aquatic	Environmental → Aquatic	7.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.48%
Sediment	Environmental → Aquatic → Sediment	7.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.76%
Loam	Environmental → Terrestrial → Soil → Loam	7.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Sand	Environmental → Terrestrial → Soil → Sand	2.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.86%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.34%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.72%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.86%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009802	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027032	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10215J12807_10172488	3300000881	Soil	MFEVHVEWFDEQKSRARFSLPGREEWKVEHLTALMQVLGQIREEMSPAVPDEPPQLQQTHFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERKRMVDYFSVQEVEWQQRHGPG
JGI10214J12806_111570421	3300000891	Soil	MFQVVVQWLDQDKSRARFALPGREEWKVEHVDALVQVLTEIRQQMTPAVPDEPPQLNETHFLHAPRYRTVLHAFSGGTLMQFRHPSLGWLPFLLPSAERRRITESFHTQEVEWEHRHSP*
JGI10214J12806_122536552	3300000891	Soil	MFQVTVEWLDEGKSRARLSLPGREEWKVEHIDALMQLLGDIRQQMTPAVPDEPPQLNETHFLHAPRYRTVLHDFSGGTLMQFRHPSLGWLPFLLPSLERRRISEYFHSQEVEWEHRHPPRPG*
soilL2_101458981	3300003319	Sugarcane Root And Bulk Soil	MFHVMVQWLDEDKSRARFSLPGREEWRAEHIDALMRMLAEIREEMTPQVPEQPPQVPRFLHAPRYHTCLHEFSGGSLIEFRHPSLGWLPFLLPSTERKRIVQSFSVQEDEWSHLHGR*
Ga0062589_1013709741	3300004156	Soil	MFQVVVEWLDPEKARARFALPGREEWKVEHLDALMQVLGEIRQQMTPAVPEDPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSLERRRMTEYFSRQEAEWEHRHGP*
Ga0063356_1040561722	3300004463	Arabidopsis Thaliana Rhizosphere	MFQVQVEWCDEEKSRARFALPGREEWKVEHITALMQLLGEIRGQMSPAVPEEPPQLQETHFLHAPRYRTVLHEFSGGTLIQFRHPSLGWLSFLLPSVERRKMVEYFSIQETEWGQRHAPGAAP*
Ga0066677_106351311	3300005171	Soil	VDWLDEEKSRAKFALPGREEWKVEHIDALMQVLSEIREQMTPVVPEEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHAPGP*
Ga0066683_103884412	3300005172	Soil	MFQVQVEWCDEEKSRARFSLPGREEWKVEHITALMQVLGEIREQMAPAVPDEPPQLQDAHFLHAPRYRTVLHEFSGGTLIHFRHPSLGWLPFLLPSFERKRITEYFAIQEQEWEHRHAPGPD*
Ga0065707_104606933	3300005295	Switchgrass Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFAIQESQWEHMHRPAAP
Ga0065707_109849871	3300005295	Switchgrass Rhizosphere	MFQVTVEWLDEGKSRARFSLPGREEWKVEHMDALMQLLGDIRRQMTPAVPDEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSLERRRISEHFHSQEAEWEHRHP
Ga0070690_1000612193	3300005330	Switchgrass Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0066388_1002378061	3300005332	Tropical Forest Soil	MFHVMVEWLDEAKTRARFALPGREEWKVEHIDTLMQLLGQIREEMAPAVPDEPPQLQSAGFLHAPRYRTALHEFSGGSLIQFRHPSLGWLPFLLPSVERRRIVQSFSTQEEEWGHRHAG*
Ga0070667_1014649892	3300005367	Switchgrass Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLQFLLPSVERRRMAEHFASQEAEWEHLHRPLSP*
Ga0070705_1001319633	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFQVVVEWLDPEKSRARLALPGREEWKVEHLDALMQVLGEIRQQMTPAVSDEPPRLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRMTEYFSRQETEWEHRHGP*
Ga0073909_101135953	3300005526	Surface Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVDHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHRPAAP*
Ga0070695_1009499841	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MFQVVVEWLDPEKSRARLALPGREEWKVEHLDALMQVLGEIRQQMTPAVSDEPPRLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRMTEYFSRHEAEWEHRHGP*
Ga0066698_108538971	3300005558	Soil	MFQVVVEWLDPEKSRARFGLPGREEWKVEHIDALMQVLSEIRQQMTPAVPEEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLIPSFERRRISEYFHTQEVEWEQRQPPRPG*
Ga0066699_108233991	3300005561	Soil	MFQVVVDWLDEEKSRAKFALPGREEWKVEHIDALMQVLSEIREQMTPAVPEEPPQLNETHFLHAPRYRTVLHKFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHAPGP*
Ga0068854_1004712403	3300005578	Corn Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQE
Ga0066905_1003414112	3300005713	Tropical Forest Soil	TRARFALPGREEWKVEHIDALMHLLGEIREEMAPAVPDEPPQLQSAGFLHAPRYRTALHEFSGGSLIQFRHPSLGWLPFLLPSTERRRIVQFFSTQEEEWGHRHGG*
Ga0068863_1012002652	3300005841	Switchgrass Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFAIQESQWEHMHRPAAP*
Ga0066652_1012881433	3300006046	Soil	MFQVVVEWLDEEKTRAKFALPGREEWKVEHIDGLMQVLSEIREQMTPAVPEEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHAPGP*
Ga0075432_103697722	3300006058	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERKRMAEHFATQESQWEHMHRPAAP*
Ga0070716_1005207701	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MFQVQVDWLDEERSRARFSLPGREEWTAEHITALMRLLGEIREQMSPGVPEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMVEHFASQEAEWEHRHWPPAP*
Ga0079222_108341221	3300006755	Agricultural Soil	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFAIQESQWEHMHPPTAAP*
Ga0075428_10000057213	3300006844	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHPPTAAP*
Ga0075428_1014589791	3300006844	Populus Rhizosphere	MFQVMVEWVDEAKTRARFALPGRDEWKVEHIDALMHLLGQIREEMTPAVPDEPPQMQSIGFLHAPRYRTELHPFSGGSLIQFRHPSLGWLPFLLPSVERRRIVQFFSTQEEEWDHRHG*
Ga0075430_1010541613	3300006846	Populus Rhizosphere	MFQVVVEWLDPEKSRARFALPGREEWKVEHVDALMQMLSEIRQQMAPAVPEEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQETEWEHRHPPSAG*
Ga0075431_1002726933	3300006847	Populus Rhizosphere	QVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHPPTAAP*
Ga0075431_1007568862	3300006847	Populus Rhizosphere	MFQVVVEWLDPEKSRARFALPGREEWKVEHVDALMQMLSEIRQQMAPAVPEEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVQWEHQHSPRAG*
Ga0075425_1007326132	3300006854	Populus Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHPPTAAP*
Ga0075434_1017931241	3300006871	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWSVEHITALMRVLGEIREQMSPGVSETPPPLPLLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVER
Ga0079215_108637301	3300006894	Agricultural Soil	MFQVEVQWLDEEKSRARFSLPGREEWKVEHLTALMQLLAEIREQMTPAVPDEPPQLQVAHFLHAPRYRTVLHEFSGGTLIHLRHPALGCLPFLLPSVERKRIAESFATQEVEWEHRQRSGPRA*
Ga0074063_137238383	3300006953	Soil	MFQVQVAWLDEQKARARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHRPAAP*
Ga0079218_118839452	3300007004	Agricultural Soil	MVQWLDEGKTRARFSLPGREEWKAEHIDSLMQVLGEIRAEMAPAVPDEPPASVPFLHAPRYRTTLHEFSGGSLMEFRHPALGWLPFLLPSAERRRIAQSFATQEVEWQHRHAR*
Ga0075435_1009325321	3300007076	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWSVEHITALMRVLGEIREQMSPGVSETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHPPTAAP*
Ga0099794_100174735	3300007265	Vadose Zone Soil	MFQVEVQWLDEQKSGAKFALPGREEWKVEHITALMQVLGQIREEMMPAVPEEPPQLQEAQFLHAPRYKTALHEFSGGTLMQFRHPSLGWLPFLLPSVERKKIEEYFAIQDVQWNERRPGA
Ga0066710_1001660102	3300009012	Grasslands Soil	MFQVQVEWCDEEKSRARFSLPGREEWKVEHITALMQVLGEIREQMAPAVPDEPPQLQDAHFLHAPRYRTVLHEFSGGTLIHFRHPSLGWLPFLLPSFERKRITEYFAIQEQEWEHRHAPGPD
Ga0066710_1009616211	3300009012	Grasslands Soil	MFQVEVERLDEHKSRARFSLPGREEWKVEHLTALMQVLGEIREQMTPAVPDEPPQDIQFLHAPRYKTVLHDFSGGSPMLFRHPSLGWLPLLLPSLERKRIEEYLATQDAQSEQRKGDPGLNA
Ga0111539_120351272	3300009094	Populus Rhizosphere	MFQVEVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPELAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERKRMAEHFATQESQWEHMHRPAAP*
Ga0111539_122534071	3300009094	Populus Rhizosphere	KGERMFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0075418_113070141	3300009100	Populus Rhizosphere	MFQVMVEWVDEAKTRARFALPGRDEWKVEHIDALMHLLGQIREEMTPAVPDEPPQMQSIGFLHAPRYRTELHPFSGGSLIQFRHPSLGWLPFLLPSVER
Ga0066709_1009765373	3300009137	Grasslands Soil	MFQVEVERLDEHKSRPRVSQPGREEWKVEHLTAVMQVLGDLREQMTPAVPDEPPQDIQFLHAPRYKTVLHDFSGGSLMLFRHPSLGWLPLLLPSLERKRIEEYLATQDAQSEQRKGDPGLNA*
Ga0099792_100476673	3300009143	Vadose Zone Soil	MFQVEVQWLDGQKSRAKFALPGREEWKVEHITALMQVLGQIREEMMPAVPEEPPQLQGAQFLHAPHYKTDLHEFSGGTLMQFRHPSLGWLPFLLPSVERKKIEENFATQDVQWNERRPAPSART*
Ga0114129_103379383	3300009147	Populus Rhizosphere	MFQVVVEWLDEEKSRAKFALPGREEWKVEHIDALMQVLSEIREQMTPAVPDEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHSPGPG*
Ga0105259_10470953	3300009597	Soil	MFQVMVEWLDDAKTRARFALPGRAEWKVEHIDALLQLLGQIREEMAPAVPDEPPQEVHFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERRRIAQSFATQEEEWDHRHGR*
Ga0105340_10059885	3300009610	Soil	MFHVMVEWLDDAKTRARFALPGREEWKVEHIDALMQLLGQIREEMAPAVPDEPPQEFHFLHAPRYRTALHEFSGGSLIQFRHPSLGWLPFLLPSVERKRIVQFFSTQEEEWDHRHGR*
Ga0105073_10359871	3300009802	Groundwater Sand	RDEEKSRAKFALPGREEWKVEHIDALMQVLSEMREQMTPAVPDEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHSPGPG*
Ga0126384_102404173	3300010046	Tropical Forest Soil	MFQVQVSWLDEEKSRARFSLPGREEWTVEHITALMRVLGEIREQMSPGVSESPPPLPQLPPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRM
Ga0134124_100466453	3300010397	Terrestrial Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHPPTAAP*
Ga0134124_101529203	3300010397	Terrestrial Soil	MFQVQVAWLDEQKSLARFSLPGRDEWSVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0134123_111400053	3300010403	Terrestrial Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVE
Ga0151490_12522622	3300011107	Soil	MFQVQGAWLDEQKSRARFSLPGRDEWNVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHRPAAP*
Ga0105246_100779133	3300011119	Miscanthus Rhizosphere	MFQVQVDWLDEERSRARFSLPGREEWTAEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0137432_10025611	3300011439	Soil	MFQVMVEWLDDAKTRARFALPGREEWKVEHIDALLQLLGQIREEMAPAVPDEPPQEVHFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERRRIAQSFATQEEEWDHRHGR*
Ga0137437_10134956	3300011442	Soil	MFQVTVEWLDEGKSRARFSLPGREEWKVEHIDVLMQLLGDIRQQMTPAVPDEPPQLNEIHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSLERRRISEYFHSQEVEWEHRHPPMGGSP*
Ga0150985_1136064372	3300012212	Avena Fatua Rhizosphere	EWTVEHITALMRLLGEIREQMSPGVSETPPPLAQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0157337_10267542	3300012483	Arabidopsis Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVSETPPPLPQLPPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVER
Ga0157352_10749772	3300012519	Unplanted Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFASQ
Ga0137394_100116023	3300012922	Vadose Zone Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0164303_101527153	3300012957	Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVDHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0164309_119602152	3300012984	Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVDHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0164305_104927171	3300012989	Soil	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALKRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0163162_100482435	3300013306	Switchgrass Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0180064_10276033	3300014876	Soil	ALPGREEWKVEHIDALMQLLGQIREEMAPAVPDEPPQEVHFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERRRIAQSFATQEEEWDHRHGR*
Ga0157376_102948781	3300014969	Miscanthus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP*
Ga0132258_101708111	3300015371	Arabidopsis Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHM
Ga0132258_135171692	3300015371	Arabidopsis Rhizosphere	MFQVTVEWLDEGKSRARFSLPGREEWKVEHMDALMQLLGDIRRQMTPAVPDEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSLERRRISEHFHSQEAEWEHRHPPRPG*
Ga0132257_1000636161	3300015373	Arabidopsis Rhizosphere	RHPPKGERMFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHPPTAAP*
Ga0132255_1000545435	3300015374	Arabidopsis Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMH
Ga0184605_100035555	3300018027	Groundwater Sediment	MFQVEVKWLDEQKSRASFSLPGREEWKVEHLTALMQVLAEIREQMTPAVPDEPPQLQDAHFLHAPRYRTVLHEFSGGTLIHFRHPSLGWLPFLLPSFERKRITEHFTTQEVEWGHRHGPHAGA
Ga0184605_100427641	3300018027	Groundwater Sediment	MFQVEVQWLDEEKSRARFALPGREEWKVEHLDALMQVLGEIRQQMTPVVPEDPPQLNETHFLHAPRYRTILHEFSGGTLMQFRHPSLGWLPFLIPSFERRRITEYFHTQEVEWEQRHPPRTG
Ga0184628_100117831	3300018083	Groundwater Sediment	MFQVTVEWLDEGKSRARFSLPGREEWKVEHIDVLMQLLGDIRQQMTPAVPDEPPQLNEIHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSLERRRISEYFHSQEVEWEHRHPPMGGSP
Ga0190265_103481313	3300018422	Soil	MFQVDVQWLDDEKSTARFSLPGREEWKVEHVTALMQVLGEIREQMTPAVPDEPPQDVQFLHAPRYKTELHEFSGGSLMLFRHPSLGWLPFLLPSLERKRMAEYFAIQEVEWKQRHAVGSR
Ga0190272_119087901	3300018429	Soil	AMFQVDVQWLDDEKSRARFSLPGREEWKVEHITALMHVLGEIREQMTPAVPDEPPQEVQFLHAPRYKTQLHEFSGGSLMLFRHPSLGWLPFLLPSLERKRMAEYFAIQEVEWKQRHGVGA
Ga0190270_122442602	3300018469	Soil	DEQKSRARFSLPGREEWKVEHLSALMQVLGQIREEMSPAVSDEPPQLQQTHFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERKRMVDYFSVQEVEWQQRHGPG
Ga0196964_103538631	3300020202	Soil	MFHVMVEWLDQGKTRARFSLPGREEWRVEHIDALMQVLVEIRAEMAPAVPDEPPQLQETHFLHAPRYRTTLHHFSGGSLIQFRHPSLGWLPFLLPSVERKRIVQYFATQEDEWQHRHGR
Ga0207671_106893513	3300025914	Corn Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLQFLLPSVERRR
Ga0207644_116516541	3300025931	Switchgrass Rhizosphere	MFQVQVDWLDEERSRARFSLPGREEWTAEHITALMRLLGEIREQMSPGVPEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLQFLLPSVERRRMAEHFASQEAEWEHLHRPLSP
Ga0207670_105445621	3300025936	Switchgrass Rhizosphere	LDEQKSLAHFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0207641_113022542	3300026088	Switchgrass Rhizosphere	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMVEHFASQEAEWEHRHWPPAP
Ga0209877_10202783	3300027032	Groundwater Sand	KSRARFALPGREEWKVEHIDSLMQVLSEIRQQMTPAVPDEPPQLNETHFLHAPRYRTVLHEFSGGTLMQFRHPSLGWLPFLLPSFERRRITEYFHTQEVEWEHRHPPRAG
Ga0208185_10188362	3300027533	Soil	MFHVMVEWLDDAKTRARFALPGREEWKVEHIDALMQLLGQIREEMAPAVPDEPPQEFHFLHAPRYRTALHEFSGGSLIQFRHPSLGWLPFLLPSVERKRIVQFFSTQEEEWDHRHGR
Ga0209118_11757121	3300027674	Forest Soil	MFQVEVQWLDEQKSRAKFALPGREEWKVEHISALMQVLGQIREEMIPAVPEEPPQLQGAQFLHAPRYKTVLHEFSGGTLMQFRHPSLGWLPFLLPSVERKKMEEYFAIQDVQWNERRPGA
Ga0209074_101330311	3300027787	Agricultural Soil	MFQVQVAWLDEQKSLARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVAEAPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFAIQESQWEHMHPPTAAP
Ga0209811_100057883	3300027821	Surface Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0209814_104542872	3300027873	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQE
Ga0209481_100020247	3300027880	Populus Rhizosphere	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHPPTAAP
Ga0209488_100130733	3300027903	Vadose Zone Soil	MFQVEVQWLDGQKSRAKFALPGREEWKVEHITALMQVLGQIREEMMPAVPEEPPQLQGAQFLHAPHYKTDLHEFSGGTLMQFRHPSLGWLPFLLPSVERKKIEENFATQDVQWNERRPAPSART
Ga0207428_110361092	3300027907	Populus Rhizosphere	MFQVEVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPELAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERKRMAEHFATQESQWEHMHRPAAP
Ga0247825_100605244	3300028812	Soil	MFHVMVQWLDTAKSRARFSLPGREEWSVEHIDALMHVLGEIRAEMTPAVPEEPPRSIPFLHAPRYHTCLHEFSGGSLIEFRHPSLGWLPFLLPSVERRRIVQSFSTQEREWEHRHGG
Ga0307499_100029934	3300031184	Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIRERMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0307495_101967151	3300031199	Soil	MFQVQVAWLDEPKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVSEVPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHPPAAP
Ga0307497_100128143	3300031226	Soil	MFQVQVAWLDEQKARARFSLPGRDEWTVEHITALMRVLGEIRERMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0310888_107339832	3300031538	Soil	MFQVQVAWLDEQKSHARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFAIQESQWEHMHRPAAP
Ga0310886_101080473	3300031562	Soil	AQGAWLHEQQSRARFSQPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0307469_125351131	3300031720	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRR
Ga0307468_1000353053	3300031740	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0307468_1001506792	3300031740	Hardwood Forest Soil	MFQVEVQWLDEQKSRASFALPGREEWKVEHISALMQVLADIREQMTPAVPDEPPQLLDSHFLHAPRYRTVLHEFSGGTLIHLRHPALGWLQFLLPSAERKRITEYFAIQEVEWEHRHAPRPPG
Ga0307468_1015409591	3300031740	Hardwood Forest Soil	MFQVEVQWLDEDKSRARFALPGREEWKVEHLDALMQVLSEIRQQMTPAVPEEPPQLNETHFLHAPRYRTILHEFSGGTLMQFRHPSLGWLPFLIPSFERRRITEYFHTQEVEWEQRHPPRAG
Ga0307473_100229733	3300031820	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPELAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFATQESQWEHMHRPAAP
Ga0307473_102704142	3300031820	Hardwood Forest Soil	MFQVEVQWLDEQKSRASFALPGREDWKVEHITALMQVLADIREQMTPAVPDEPPQLLDSHFLHAPRYRTVLHEFSGGTLIHLRHPALGWLQFLLPSAERKRITEYFAIQEVEWEHRHAPRPPG
Ga0310892_107940932	3300031858	Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVDHITALMRLLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0310893_104585502	3300031892	Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVDHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPA
Ga0310885_100931293	3300031943	Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0310884_103535731	3300031944	Soil	QKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0310902_104189471	3300032012	Soil	MFQVQVAWLDEQKSHARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRR
Ga0310890_101688523	3300032075	Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEH
Ga0307470_100921673	3300032174	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPELAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0310889_101242511	3300032179	Soil	MFQVQVAWLDEQQSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEHFATQESQWEHMHRPAAP
Ga0307471_1002920054	3300032180	Hardwood Forest Soil	MFQVEVQWLDEQKSRASFALPGREDWKVEHITALMHVLADIREQMTPAVPDEPPQLLDSHFLHAPRYRTVLHEFSGGTLIHLRHPALGWLQFLLPSAERKRITEYFAIQEVEWEHRHAPRPPG
Ga0307471_1003555244	3300032180	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRLLGEIREQMSPGVPETPPPLPQLAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFATQESQWEHMHRPAAP
Ga0307472_1008015661	3300032205	Hardwood Forest Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPELAPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVERRRMAEYFATQESQWEHMHR
Ga0307472_1015245931	3300032205	Hardwood Forest Soil	MFQVEVQWLDEQKSCASFALPGREDWKVEHITALMQVLADIREQMTPAVPDEPPQLLDSHFLHAPRYRTVLHEFSGGTLIHLRHPALGWLPFLLPSAERKRITEYFAIQEVEWEHRHAPRPPG
Ga0310896_104061221	3300032211	Soil	MFQVQVAWLDEQKSRARFSLPGRDEWTVEHITALMRVLGEIREQMSPGVPETPPPLPQLTPLHAPRYRTVLHEFSGGSLIQFRHPSLGWLEFLLPSVER
Ga0247829_109653491	3300033550	Soil	MFHVMVEWLDDAKTRARFALPGREEWKVEHIDALMHLLGQIREEMAPAVPDEPPQETGFLHAPRYRTVLHEFSGGSLIQFRHPSLGWLPFLLPSVERQRIVRFLATQEEEWDHRHSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079112

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences