Metagenome / Metatranscriptome Family F079035

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079035
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	43 residues
Representative Sequence	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADEALAVDVAAG
Number of Associated Samples	109
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.66 %
% of genes near scaffold ends (potentially truncated)	93.97 %
% of genes from short scaffolds (< 2000 bps)	96.55 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.621 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.828 % of family members)
Environment Ontology (ENVO)	Unclassified (22.414 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.80% β-sheet: 0.00% Coil/Unstructured: 66.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02566	OsmC	43.97
PF00487	FA_desaturase	7.76
PF12697	Abhydrolase_6	6.90
PF13466	STAS_2	5.17
PF06197	DUF998	2.59
PF00583	Acetyltransf_1	2.59
PF05731	TROVE	2.59
PF01047	MarR	1.72
PF00106	adh_short	1.72
PF01061	ABC2_membrane	0.86
PF00196	GerE	0.86
PF00293	NUDIX	0.86
PF03551	PadR	0.86
PF12802	MarR_2	0.86
PF12695	Abhydrolase_5	0.86
PF12680	SnoaL_2	0.86
PF12833	HTH_18	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	43.97
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	43.97
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	7.76
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	7.76
COG3371	Uncharacterized membrane protein	Function unknown [S]	2.59
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.86
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.86
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.03 %
Unclassified	root	N/A	16.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	73.28 %
Unclassified	root	N/A	16.38 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.14 %
Unclassified	root	N/A	16.38 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.86 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.38 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.90 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.72 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.38 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	6.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.38 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	6.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.38 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	6.03 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.72 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101816852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510	Open in IMG/M
3300003505\|JGIcombinedJ51221_10066780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1396	Open in IMG/M
3300005327\|Ga0070658_10168676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1838	Open in IMG/M
3300005337\|Ga0070682_100109668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1837	Open in IMG/M
3300005406\|Ga0070703_10132999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	916	Open in IMG/M
3300005434\|Ga0070709_10903162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	698	Open in IMG/M
3300005434\|Ga0070709_11611047	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300005435\|Ga0070714_100685481	Not Available	988	Open in IMG/M
3300005445\|Ga0070708_101320717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300005542\|Ga0070732_10631271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300005554\|Ga0066661_10679589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300005587\|Ga0066654_10542359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	640	Open in IMG/M
3300005591\|Ga0070761_10157245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1334	Open in IMG/M
3300005712\|Ga0070764_10897567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300005840\|Ga0068870_10307008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1003	Open in IMG/M
3300005921\|Ga0070766_10437597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	862	Open in IMG/M
3300006028\|Ga0070717_10353330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1314	Open in IMG/M
3300006175\|Ga0070712_100279312	Not Available	1344	Open in IMG/M
3300006755\|Ga0079222_10379581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	972	Open in IMG/M
3300006804\|Ga0079221_10283923	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300006806\|Ga0079220_10165248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1238	Open in IMG/M
3300006806\|Ga0079220_10413247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	886	Open in IMG/M
3300006854\|Ga0075425_100450990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1481	Open in IMG/M
3300006871\|Ga0075434_100618706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1102	Open in IMG/M
3300009090\|Ga0099827_10119231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300009525\|Ga0116220_10078455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1389	Open in IMG/M
3300009551\|Ga0105238_10204535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1950	Open in IMG/M
3300009698\|Ga0116216_10364123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	879	Open in IMG/M
3300009824\|Ga0116219_10194164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1164	Open in IMG/M
3300010047\|Ga0126382_10799200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300010301\|Ga0134070_10371314	Not Available	559	Open in IMG/M
3300010326\|Ga0134065_10296693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300010358\|Ga0126370_12628265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300010360\|Ga0126372_13249888	Not Available	505	Open in IMG/M
3300010373\|Ga0134128_11916079	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652	Open in IMG/M
3300010379\|Ga0136449_103898218	Not Available	559	Open in IMG/M
3300010396\|Ga0134126_11852414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300010398\|Ga0126383_11862785	Not Available	690	Open in IMG/M
3300010403\|Ga0134123_10356977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1322	Open in IMG/M
3300012096\|Ga0137389_10152466	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300012181\|Ga0153922_1144134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300012189\|Ga0137388_11556932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	597	Open in IMG/M
3300012202\|Ga0137363_10408740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1131	Open in IMG/M
3300012203\|Ga0137399_10158794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1812	Open in IMG/M
3300012961\|Ga0164302_11738024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300012988\|Ga0164306_10230867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1316	Open in IMG/M
3300013102\|Ga0157371_10406298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	997	Open in IMG/M
3300013296\|Ga0157374_10427201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1324	Open in IMG/M
3300015373\|Ga0132257_100588484	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1374	Open in IMG/M
3300017822\|Ga0187802_10204293	Not Available	760	Open in IMG/M
3300017972\|Ga0187781_10575135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300018044\|Ga0187890_10154837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1312	Open in IMG/M
3300018060\|Ga0187765_10225873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300018433\|Ga0066667_10895199	Not Available	763	Open in IMG/M
3300020081\|Ga0206354_10163438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1326	Open in IMG/M
3300021170\|Ga0210400_10619990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	892	Open in IMG/M
3300021178\|Ga0210408_10420435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1064	Open in IMG/M
3300021180\|Ga0210396_11755176	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503	Open in IMG/M
3300021403\|Ga0210397_11244823	All Organisms → cellular organisms → Bacteria → Terrabacteria group	578	Open in IMG/M
3300021404\|Ga0210389_11017267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	642	Open in IMG/M
3300021404\|Ga0210389_11113659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300021433\|Ga0210391_10383372	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1103	Open in IMG/M
3300025321\|Ga0207656_10683179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300025898\|Ga0207692_10173754	Not Available	1250	Open in IMG/M
3300025899\|Ga0207642_10306464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300025906\|Ga0207699_11143084	Not Available	577	Open in IMG/M
3300025911\|Ga0207654_10173593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1402	Open in IMG/M
3300025915\|Ga0207693_10146184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1859	Open in IMG/M
3300025915\|Ga0207693_10258242	Not Available	1366	Open in IMG/M
3300025916\|Ga0207663_10361630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1101	Open in IMG/M
3300025916\|Ga0207663_11082514	All Organisms → cellular organisms → Bacteria → Terrabacteria group	644	Open in IMG/M
3300025922\|Ga0207646_11073592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	709	Open in IMG/M
3300025928\|Ga0207700_10246259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1525	Open in IMG/M
3300025934\|Ga0207686_11054704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	661	Open in IMG/M
3300025935\|Ga0207709_11148717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300025938\|Ga0207704_11296722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300025945\|Ga0207679_11504822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300026277\|Ga0209350_1159277	Not Available	511	Open in IMG/M
3300027047\|Ga0208730_1009046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1049	Open in IMG/M
3300027288\|Ga0208525_1021934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300027523\|Ga0208890_1070798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300027765\|Ga0209073_10083339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300027884\|Ga0209275_10703691	Not Available	582	Open in IMG/M
3300027895\|Ga0209624_10871364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	589	Open in IMG/M
3300028784\|Ga0307282_10188980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	983	Open in IMG/M
3300028789\|Ga0302232_10325447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	758	Open in IMG/M
3300029882\|Ga0311368_10094233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2574	Open in IMG/M
3300029999\|Ga0311339_10955992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300030494\|Ga0310037_10304655	Not Available	678	Open in IMG/M
3300030524\|Ga0311357_11615039	Not Available	545	Open in IMG/M
3300030707\|Ga0310038_10194047	All Organisms → cellular organisms → Bacteria → Terrabacteria group	974	Open in IMG/M
3300030743\|Ga0265461_12653151	Not Available	595	Open in IMG/M
3300031545\|Ga0318541_10161904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231	Open in IMG/M
3300031680\|Ga0318574_10673656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300031716\|Ga0310813_11618977	Not Available	605	Open in IMG/M
3300031748\|Ga0318492_10755575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300031764\|Ga0318535_10268015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300031765\|Ga0318554_10619565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300031777\|Ga0318543_10517847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300031860\|Ga0318495_10356673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300031946\|Ga0310910_11481570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300031954\|Ga0306926_11892254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	674	Open in IMG/M
3300032008\|Ga0318562_10276474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300032008\|Ga0318562_10763191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300032039\|Ga0318559_10299503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300032044\|Ga0318558_10270723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300032066\|Ga0318514_10464369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300032067\|Ga0318524_10156425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1154	Open in IMG/M
3300032091\|Ga0318577_10072390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1582	Open in IMG/M
3300032180\|Ga0307471_102412527	Not Available	665	Open in IMG/M
3300032180\|Ga0307471_102877476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	611	Open in IMG/M
3300032805\|Ga0335078_10174548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3014	Open in IMG/M
3300032892\|Ga0335081_10667427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1268	Open in IMG/M
3300032896\|Ga0335075_11085191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300032897\|Ga0335071_10006198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12344	Open in IMG/M
3300033134\|Ga0335073_12066807	Not Available	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.21%
Host-Associated	Host-Associated	13.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.48%
Plants	Host-Associated → Plants	12.93%
Aquatic	Environmental → Aquatic	1.72%
Fungi	Host-Associated → Fungi	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.31%
Peat	Environmental → Terrestrial → Peat	3.45%
Freshwater	Environmental → Aquatic → Freshwater	1.72%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.31%
Loam	Environmental → Terrestrial → Soil → Loam	20.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.86%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.07%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.45%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1018168522	3300002245	Forest Soil	MENAGPSVTARRVAAYRLGFTRVAAPYGDAAADQALAADVA
JGIcombinedJ51221_100667801	3300003505	Forest Soil	MKDGTASHTARRVAAHRLEYERVAADYGDPAADLALTVDVA
Ga0070658_101686762	3300005327	Corn Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGR*
Ga0070682_1001096683	3300005337	Corn Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAG
Ga0070703_101329992	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALSVDVAAGR*
Ga0070709_109031622	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGR*
Ga0070709_116110471	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARHVAAHRLEFTRVHADYGDPAADQALAVDVAAG
Ga0070714_1006854813	3300005435	Agricultural Soil	MADGEPLGPSVTARRVAAYRLGFTRVPAPYGDAAADEALAADVAAG
Ga0070708_1013207171	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARWVAAHRLDFTRIPADYGDPAADHALAVDVAA
Ga0070732_106312712	3300005542	Surface Soil	MDLDSGPSLTAQRVAAHRLSFARPGWPHGNPAADDALAADVVAGSVTGQ
Ga0066661_106795891	3300005554	Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADQALAVDVAAGHQAQ
Ga0066654_105423592	3300005587	Soil	MEHGGPSQTARRVAAHRVDFTRVPADYGDPAADRALALDVAAGRQAPAS
Ga0070761_101572453	3300005591	Soil	MDDGGPSATARRVAAYRLGFTRVAASYGNPAADEALAADV
Ga0070764_108975671	3300005712	Soil	MITDGGPSVTAKRVAAHRLTYDRIPWQHGDPAADDALAADIAAGA
Ga0068870_103070081	3300005840	Miscanthus Rhizosphere	ARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGR*
Ga0070766_104375973	3300005921	Soil	MEGAGPSVTAQRVAAHRLGFTRVPAPYGDPAADEA
Ga0070717_103533303	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARHVAAHRLEFTRVHADYGDPAADQALAVDVAA
Ga0070712_1002793121	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSVTARRVAAHRLGFSRIPAAYGDPAADQALAADVAA
Ga0079222_103795811	3300006755	Agricultural Soil	MEDGGPSQTARRVAAHRLGFTRIPADYGDPAADHALAVDVAAG
Ga0079221_102839232	3300006804	Agricultural Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGEPAADEALAVDVAAGHQVPA
Ga0079220_101652482	3300006806	Agricultural Soil	MEDAGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGPGGTQDA*
Ga0079220_104132473	3300006806	Agricultural Soil	MEDGGPSQTARRVAAYRLDFTRIPADYGDPAADHALAVDVAAGRQA
Ga0075425_1004509901	3300006854	Populus Rhizosphere	MEDGGPSQTARRVAAHRLDFRRIPADYGHPAADHALAVDVAAGRQAPA
Ga0075434_1006187061	3300006871	Populus Rhizosphere	MEDGGPSVTARWVAAHRLGFARVAADYGDPAADEALAADVAAGRAAPAR
Ga0099827_101192313	3300009090	Vadose Zone Soil	MEDGGPSATARRVAAHRLGFTRVPAAYGDPAADEALAA
Ga0116220_100784553	3300009525	Peatlands Soil	MDDGGPSVTARRVAAHRLGFSRIPAAYGVPAADEALAASDP*
Ga0105238_102045351	3300009551	Corn Rhizosphere	MEDGGPSVTARRVAAHRLGFTRIATDYGDPAADEALA
Ga0116216_103641231	3300009698	Peatlands Soil	MEDGGPSVTARRVAAHRLGFSRVPAAYGVPAADDALAADVAAGL
Ga0116219_101941641	3300009824	Peatlands Soil	MIEGRPSETAQRVAAHRLAFERVATKYGNPAADMALATDVAG
Ga0126382_107992003	3300010047	Tropical Forest Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADQALA
Ga0134070_103713142	3300010301	Grasslands Soil	MEHGGPSQTARWVAAHRLDFTRVPADYGEPAADHALAVDVAAGRQA
Ga0134065_102966932	3300010326	Grasslands Soil	MEDGGPSQTAHRVAAHRLDFTRVPADYGDPAADHALAVDVAAGR
Ga0126370_126282652	3300010358	Tropical Forest Soil	MEHGGPSQTARRVAAHRLDFTRVPADYGDPAADHALAVDVAAGRQA
Ga0126372_132498882	3300010360	Tropical Forest Soil	MEDGGPSQTARRVAAYRLDFDRVPADYGDPAADQALTADVAAGHRVQ
Ga0134128_119160792	3300010373	Terrestrial Soil	MEDGGPSVTARWVAAHRLGFARVATDYGDPAADEA
Ga0136449_1038982181	3300010379	Peatlands Soil	MDDGGPSVTARRVAAHRLGFSRVPAAYGVPAADEALAADVAAGLVA
Ga0134126_118524141	3300010396	Terrestrial Soil	SQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGR*
Ga0126383_118627851	3300010398	Tropical Forest Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADQALAADVAD
Ga0134123_103569771	3300010403	Terrestrial Soil	MEDGGPSQTARRVAAHRLDFRRIPADYGDPAADHA
Ga0137389_101524665	3300012096	Vadose Zone Soil	MEDGGPSATARRVAAHRLGFTRVPAAYGDPAADEAL
Ga0153922_11441342	3300012181	Attine Ant Fungus Gardens	MSGPSITARRVAAYRLGFTRVPAPYGDAAADETLAADVAAGQEPA
Ga0137388_115569321	3300012189	Vadose Zone Soil	MEDGGPSATARRVAAHRLGFTRVPAAYGDPAADEALAADVAA
Ga0137363_104087403	3300012202	Vadose Zone Soil	MEEGGPSVTARRVAAHRLGFTRVATDYGDPAADEALAADVAAGRAAPA
Ga0137399_101587944	3300012203	Vadose Zone Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADEALAVDVAAGRQAPA
Ga0164302_117380241	3300012961	Soil	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADYAL
Ga0164306_102308671	3300012988	Soil	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHVLAVDVAAGR*
Ga0157371_104062981	3300013102	Corn Rhizosphere	MEDGGPSVTARWVAAHRLGFARVATDYGDPAADEAMAAEVAAGR
Ga0157374_104272011	3300013296	Miscanthus Rhizosphere	MEDGGPSVTARRVAAHRLGFTRIATDYGDPAADEALAADVAAGR
Ga0132257_1005884841	3300015373	Arabidopsis Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGEPAADDALA
Ga0187802_102042931	3300017822	Freshwater Sediment	MEDGGPSVTARRVAAHRLGFSRVPAPYGAPAADEA
Ga0187781_105751353	3300017972	Tropical Peatland	MEDGGPSVTARRVAAHRLGFTRVPAAYGDPAADETLAAD
Ga0187890_101548371	3300018044	Peatland	MEDGGPSITARRVAAHRLGFTRVSAPYGDPAADDAL
Ga0187765_102258733	3300018060	Tropical Peatland	MKDGGPSATARQVAAHRLGFTRVPAAYGDPAADQTLAADVAAGLQAPA
Ga0066667_108951993	3300018433	Grasslands Soil	MGQMKDGRPSVTARRVAAHRLGFTRVATDYGDPAADEALA
Ga0206354_101634382	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGR
Ga0210400_106199903	3300021170	Soil	MKDGTASHTARRVAAHRLEYERVAADYGDPAADLALTVDVAGQEQPTPGRM
Ga0210408_104204353	3300021178	Soil	MEDGGPSVTARRVAAHRLGFSRIAADYGDPAADEALAADV
Ga0210396_117551761	3300021180	Soil	MEDGGPSLTARRVAAHRLGFSRVPAAYGVPAADDALAAD
Ga0210397_112448231	3300021403	Soil	MEDGGPSLTARRVAAHRLGFSRVPAAYGVPAADDALAADVAA
Ga0210389_110172672	3300021404	Soil	MEDGGPSVTARRVAAHRLGFARVATDYGDPAADEAMAADV
Ga0210389_111136591	3300021404	Soil	MDDGGPSATARRVAAYRLGFTRVAASYGNPAADEALAADVAAGQQPS
Ga0210391_103833721	3300021433	Soil	MEDRGPSVTARRVAAHRLGFSRVSAAYGVPAADEALAADVAAGLV
Ga0207656_106831791	3300025321	Corn Rhizosphere	MEDGGPSQTARRVAAHRLDFRRIPADYGDPAADHALAVDVAAGRQAPA
Ga0207692_101737543	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDV
Ga0207642_103064642	3300025899	Miscanthus Rhizosphere	MEDGGPSVTARWVAAHRLGFARVATDYGDPAADEALAADVAAGRAAPAN
Ga0207699_111430841	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSVTARWVAAHRLGFARVATGYGDPAADEALAADVAAGRA
Ga0207654_101735931	3300025911	Corn Rhizosphere	MEDGGPSQTARRVAAHRLDFSRIPADYGDPAADHALAV
Ga0207693_101461844	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSVTARRVAAHRLGFTRIATDYGDPAADEALAADVAAGQTAPAG
Ga0207693_102582421	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSVTARRVAAHRLGFSRIPAAYGDPAADQALAADVAAGH
Ga0207663_103616301	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADEALAVDVAAG
Ga0207663_110825142	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSVTARRVAAHRLGFTRIATDYGDPAADEALAADVAAGAT
Ga0207646_110735922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARWVAAHRLDFTRIPADYGDPAADHALAVDVAAGRQAPA
Ga0207700_102462591	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADQALAVDVAAGHQ
Ga0207686_110547042	3300025934	Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGRQ
Ga0207709_111487172	3300025935	Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFRRIPADYGHPAADYALAVDVA
Ga0207704_112967221	3300025938	Miscanthus Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHAL
Ga0207679_115048222	3300025945	Corn Rhizosphere	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADHA
Ga0209350_11592771	3300026277	Grasslands Soil	MEDGGPSQTARGVAAHRLDFTRVPADYGDPAADHALAVDVAA
Ga0208730_10090463	3300027047	Forest Soil	MDHGGPSATARRVAAYRLGFTRVPAPYGDPAADEAL
Ga0208525_10219342	3300027288	Soil	MEDGGPSVTARWVAAHRLGFARVATDYGDPAADEALAADVAAGRAAPA
Ga0208890_10707982	3300027523	Soil	MEDGGPSVTARWVAAHRLGFARVATDYGDPAADEALAADVAAGR
Ga0209073_100833391	3300027765	Agricultural Soil	MEDAGPSQTARRVAAHRLDFTRIPADYGDPAADHALAVDVAAGPGGTQDA
Ga0209275_107036911	3300027884	Soil	MEDGGPSVTARRVAAHRLGFSRVAAAYGVPAVDDALAADVA
Ga0209624_108713642	3300027895	Forest Soil	MLMKDGTASQTARSVAAHRLEYERVAADYGDPAADQSLTVDVADGR
Ga0307282_101889803	3300028784	Soil	MEDGGPSQTARLVAAHRLDFNRIPADYGDPAADHALAVD
Ga0302232_103254473	3300028789	Palsa	VQDGGPSITARSVAAHRLGFTRVPAPYGDPAADDALAVDVAAGRDAP
Ga0311368_100942334	3300029882	Palsa	MKDGGPSITAQWVAAHRLGFTRVAAPYGDPAADDALA
Ga0311339_109559921	3300029999	Palsa	MEDGGPSITARRVAAHRLGFTRVPAPYGDPAADDALAT
Ga0310037_103046551	3300030494	Peatlands Soil	MEDGGPSVTARRVAAHRLGFSRVPAPYGVPTADDALAADV
Ga0311357_116150392	3300030524	Palsa	MPERSPSLTAQRVAAYRLGFDRLQTPYGDPGADDALA
Ga0310038_101940471	3300030707	Peatlands Soil	MEDGGPSVTARRVAAHRLGFSRVPAAYGVPAADEALAADVAAGL
Ga0265461_126531511	3300030743	Soil	MIEGRPSETAQRVAAHRLAFERVATKYGNPAADMALATDVAGWPQH
Ga0318541_101619043	3300031545	Soil	MEEGGPSQTARRVAAHRLDFTRVPADYGDPAADQALAVDVAARWSCIRLA
Ga0318574_106736562	3300031680	Soil	MEDGGPSVTARRVAAHRLGFDRVPVAYGDPAADEALAADVAAGWRIVAG
Ga0310813_116189771	3300031716	Soil	MEHGGPSQTARWVAAHRLDFIRVPADYGDPAADDAL
Ga0318492_107555752	3300031748	Soil	MEDGGPSETARRVAAHRLGFDRVPVAYGDPAADEVLAAD
Ga0318535_102680151	3300031764	Soil	MEDGGPSQTAHRVAAYRLDFDRVPADYGDPAADQALTADVAAGHRVQAGRHIG
Ga0318554_106195651	3300031765	Soil	MEDGGPSETARRVAAHRLGFDRVPVAYGDPAADEVLA
Ga0318543_105178471	3300031777	Soil	MEDGGPSQTAHRVAAYRLDFDRVPADYGDPAADQALTADVAAGHRV
Ga0318495_103566732	3300031860	Soil	MEDGGPSQIARRVAAHRLDFARVPADYGDPAADQALAADVAAR
Ga0310910_114815701	3300031946	Soil	MRDGGPSQTARRVAAYRLDFTRVPADYGVPAADQALAADVAGGLLAPA
Ga0306926_118922541	3300031954	Soil	MEDGGPSQTARRVAAHRLDFTRLPADYGNPAADQALAVDVAAE
Ga0318562_102764741	3300032008	Soil	MEDGGPSQTARRVAAHRLDFTRVPADFGDPAADLALAVDVA
Ga0318562_107631912	3300032008	Soil	MEDGGPSETARRVAAHRLGFDRVPVAYGDPAADEVLAADV
Ga0318559_102995031	3300032039	Soil	MEDGGPSQTAHRVAAYRLDFDRVPADYGDPAADQALTADVAAGHRVQAGRM
Ga0318558_102707233	3300032044	Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADQALATDVANGLLA
Ga0318514_104643691	3300032066	Soil	MEDGGPSQTARRVAAHRLDFTRVPADYGDPAADLALAADVAGG
Ga0318524_101564253	3300032067	Soil	MRDGGPSQTARRVAAYRLDFTRVPADYGVPAADQALAADVAAGHRAPASRM
Ga0318577_100723904	3300032091	Soil	MEDGGPSQTAHRVAAYRLDFDRVPADYGDPAADQALTADVA
Ga0307471_1024125271	3300032180	Hardwood Forest Soil	MDDGGPSVTARRVAAHRLGFTRVAAEYGDPAADEALAADVAAGRAAPAN
Ga0307471_1028774761	3300032180	Hardwood Forest Soil	MEDGGPSETARRVAAHRLGYIRVAADYGDPAADEARAADVAVGRAAPA
Ga0335078_101745487	3300032805	Soil	MDDGSPSATARRVAAHRLGFSRVPAAYGVPAADEALTRDVAADQV
Ga0335081_106674273	3300032892	Soil	MEDGGPSVTARRVAAYRLGFDRVATDYGDPAADQALTADVA
Ga0335075_110851913	3300032896	Soil	MEHGGPSATASRVAAHRLTFTRVAADYGDPAADDALAADVAAGLE
Ga0335071_100061981	3300032897	Soil	MEDGGPSQTARRVAAHRLDFTRIPADYGDPAADQALA
Ga0335073_120668072	3300033134	Soil	VRDGRPSATAQRVAAHRLGYERIATPYGDPSADEALAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079035

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences