NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079032

Metagenome / Metatranscriptome Family F079032

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079032
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 42 residues
Representative Sequence DGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Number of Associated Samples 96
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.61 %
% of genes near scaffold ends (potentially truncated) 95.69 %
% of genes from short scaffolds (< 2000 bps) 93.10 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.552 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.862 % of family members)
Environment Ontology (ENVO) Unclassified
(31.897 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.345 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1Ga0066398_101879051
2Ga0066397_100143922
3Ga0066388_1026219542
4Ga0066388_1032330721
5Ga0066388_1059500342
6Ga0066388_1077344751
7Ga0066692_100807633
8Ga0066691_104791762
9Ga0066903_1015062591
10Ga0066903_1042252061
11Ga0066903_1080273732
12Ga0070766_105100032
13Ga0066652_1010815912
14Ga0075024_1001984702
15Ga0075026_1006404712
16Ga0070712_1004528381
17Ga0070712_1014160032
18Ga0070765_1022856602
19Ga0074060_111080752
20Ga0066660_111227252
21Ga0075428_1023741042
22Ga0075419_114417672
23Ga0116220_104184491
24Ga0126374_104751982
25Ga0126312_114299371
26Ga0126380_102194651
27Ga0126384_107093992
28Ga0134062_104767612
29Ga0126376_109560032
30Ga0126376_111885032
31Ga0126372_104050902
32Ga0126377_108182581
33Ga0126381_1042691751
34Ga0126383_105167811
35Ga0126383_107320772
36Ga0137382_106140102
37Ga0137362_103731022
38Ga0137362_116012772
39Ga0137378_105228151
40Ga0157286_104294061
41Ga0137395_100927331
42Ga0137419_103718072
43Ga0137407_122371181
44Ga0137410_107088811
45Ga0126375_115076102
46Ga0157376_104793243
47Ga0137412_110684152
48Ga0132258_108255801
49Ga0132256_1024714932
50Ga0132257_1004089762
51Ga0132257_1025876482
52Ga0182036_114920591
53Ga0182034_109458221
54Ga0182040_100229621
55Ga0182037_100843822
56Ga0182039_110068272
57Ga0182039_114750921
58Ga0184621_102697691
59Ga0190268_118562101
60Ga0190270_100843894
61Ga0066669_121796081
62Ga0210399_113196401
63Ga0210400_104073862
64Ga0210400_104651741
65Ga0210400_113290341
66Ga0210405_106927241
67Ga0210396_105303142
68Ga0210397_107737361
69Ga0210391_113223002
70Ga0210410_113933492
71Ga0126371_101914451
72Ga0222623_103670522
73Ga0209234_13028642
74Ga0209268_10565242
75Ga0257155_10484132
76Ga0257161_10244091
77Ga0257168_10839712
78Ga0209805_13267582
79Ga0208995_10881502
80Ga0209466_10186501
81Ga0209466_10278082
82Ga0207826_12227441
83Ga0209447_102028272
84Ga0209060_105499341
85Ga0209624_109921131
86Ga0209382_111801922
87Ga0307284_104322642
88Ga0308309_106814402
89Ga0311354_103758242
90Ga0318534_100621882
91Ga0318534_105271472
92Ga0318541_100048435
93Ga0318528_105422522
94Ga0318528_106635572
95Ga0318572_105825181
96Ga0318500_102084751
97Ga0306918_109334051
98Ga0306918_110973132
99Ga0318535_100490682
100Ga0318526_103473312
101Ga0318565_102720881
102Ga0318517_102949932
103Ga0318517_103861642
104Ga0306925_103599721
105Ga0306923_104660211
106Ga0306923_121680661
107Ga0310913_105122191
108Ga0310909_109003961
109Ga0318530_102836152
110Ga0318553_101469192
111Ga0308173_121247301
112Ga0311301_105549142
113Ga0307471_1023597992
114Ga0335082_109445272
115Ga0310914_102776831
116Ga0310914_114014202
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.19%    β-sheet: 0.00%    Coil/Unstructured: 76.81%
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510152025303540DGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRFSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
96.6%3.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Arabidopsis Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
3.4%7.8%10.3%5.2%25.9%9.5%10.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066398_1018790513300004268Tropical Forest SoilYDAQMPSFSADGAWDPKAIEVIRHSLKDLGILPQVPDAKAIYNGKFVPVKF*
Ga0066397_1001439223300004281Tropical Forest SoilSDGAWSPVAIDVIRHSLKELGILPVVPEAKTIYNDKFVPVKF*
Ga0066388_10262195423300005332Tropical Forest SoilAWSPAAIDVIRHSLKELGILASVPEAKAIYNDKFVPVKF*
Ga0066388_10323307213300005332Tropical Forest SoilTDGAWDPASIEVIRNSLKELEILDFVPEAKTIYNDQFVPVKF*
Ga0066388_10595003423300005332Tropical Forest SoilAWNPAAIEVIRHSLKELGILPVVPEAKTIYNDQFVPVRF*
Ga0066388_10773447513300005332Tropical Forest SoilQIGSFSSDGAWDPVAIDVIRNSLKELGILDFVPEAKTIYNDKFVPVQI*
Ga0066692_1008076333300005555SoilGAWNPAAIDVIRHSLKELGILSVEPEAKAISNDQFVPVRF*
Ga0066691_1047917623300005586SoilGFSGDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0066903_10150625913300005764Tropical Forest SoilPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0066903_10422520613300005764Tropical Forest SoilAIDVIRNSLKELGILDFVPEAKTIYNDKFVPVKI*
Ga0066903_10802737323300005764Tropical Forest SoilDGAWDPKAIEVIRHSLKELGILPEVPDAKALYNDKFVPVKF*
Ga0070766_1051000323300005921SoilSRAMDVIASSLKELGILPVVPDAKALYTDKFVPVKF*
Ga0066652_10108159123300006046SoilKVYDTQIGSFSADGAWDMQSIDVIRNSLKELGILDFIPEAKVIYNDKFVPVKF*
Ga0075024_10019847023300006047WatershedsDPVAIDVIRKSLKELGILDAVPEAKTIYNDKFVPVKLAQ*
Ga0075026_10064047123300006057WatershedsDGAWDPVAIDVIRNSLKELGILDTVPEAKTIYNDKFVPVKLAQ*
Ga0070712_10045283813300006175Corn, Switchgrass And Miscanthus RhizosphereWSAAAIDVIRRSLKELGTLDHVPDANTIHNDKFVPVKF*
Ga0070712_10141600323300006175Corn, Switchgrass And Miscanthus RhizosphereDGAWDPAAIDVIRHSLKELGILLAVPDAKDLYTNKFVPVKF*
Ga0070765_10228566023300006176SoilGAWDPAAIDVIRNSLKDLGILDTVPAAKTLYNDQFVPVKF*
Ga0074060_1110807523300006604SoilFSADGAWDMQSIDVIRNSLKDLGILDFVPEAKVIYNDKFVPVKF*
Ga0066660_1112272523300006800SoilPAAIDVIRHSLKELGILPTVPDAKAIYNDTFVPVKF*
Ga0075428_10237410423300006844Populus RhizosphereAQVNGFSRDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL*
Ga0075419_1144176723300006969Populus RhizosphereEAQMAGFSPDGAWSPVAIDVIRHSLKELGILASVPEAKAIYNDKFVPVKF*
Ga0116220_1041844913300009525Peatlands SoilAVDVIRSSLKELGILPVVPEANQLTTDKFVPVRF*
Ga0126374_1047519823300009792Tropical Forest SoilSLDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFAPVRF*
Ga0126312_1142993713300010041Serpentine SoilTQIGSFSTDGAWDPQAIEVIRHSLKDLGILDFVPEAKTIYNDKFVPVKL*
Ga0126380_1021946513300010043Tropical Forest SoilDVAAIDVIRQSLNELGILNRVPEPHELYTDKFVPVRF*
Ga0126384_1070939923300010046Tropical Forest SoilDVAAIDVIRLSLNELGILNRVPEPHELYTDKFVPVRF*
Ga0134062_1047676123300010337Grasslands SoilAGFSGDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126376_1095600323300010359Tropical Forest SoilDAQMGGFSSDGAWDPKAIEVIRHSLKDLGILPEVPDAKAIYTDKFVPVRF*
Ga0126376_1118850323300010359Tropical Forest SoilPVAIDVIRNSLKELGILDFVPEAKTIYNDKFVPVQI*
Ga0126372_1040509023300010360Tropical Forest SoilAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126377_1081825813300010362Tropical Forest SoilNGAWDPVAIDVIRNSLKELGILDFIPEAKAIYNDKFVPVNL*
Ga0126381_10426917513300010376Tropical Forest SoilGAWDMAAIDVIRHSLNELGILSRVPEAHEIYNDQFVPVTF*
Ga0126383_1051678113300010398Tropical Forest SoilSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF*
Ga0126383_1073207723300010398Tropical Forest SoilVSIDVIRNSLKELGILDFIPEAKAIYNDKFVPVHL*
Ga0137382_1061401023300012200Vadose Zone SoilASLDVIRNSLKELEILDFVPEAKTIYNDAFVPVKF*
Ga0137362_1037310223300012205Vadose Zone SoilFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF*
Ga0137362_1160127723300012205Vadose Zone SoilWDPEAIDVIRSSLKELGILPAIPDAKALYTDRFVPVRF*
Ga0137378_1052281513300012210Vadose Zone SoilIGGFSTDGAWDMASLDVIRNSLKELEILDFVPEAKTIYNDAFVPVKF*
Ga0157286_1042940613300012908SoilWDAASIDVIRKSLVDLGILDKVPDAKTIYNDQFVPVKF*
Ga0137395_1009273313300012917Vadose Zone SoilIAGFSVDGAWSPAAIDVIRHSLKELGILSAVPEAKAIYNDQFVPVRF*
Ga0137419_1037180723300012925Vadose Zone SoilDPEAIDVIRSSLKELGILPAVPDAKALYTDRFVPVRF*
Ga0137407_1223711813300012930Vadose Zone SoilGAWSPAAIDVIRHSLKELGILSAVPEAKAIYNDQFVPVRF*
Ga0137410_1070888113300012944Vadose Zone SoilVYDTQIGSFSADGAWDMQSIDVIRNSLKDLGILDFVPEAKTIYNDKFVPVKF*
Ga0126375_1150761023300012948Tropical Forest SoilPVAIDVIRNSLKDLGILDFIPEAKAIYNDKFVPVNL*
Ga0157376_1047932433300014969Miscanthus RhizosphereDTQIGSFSTDGAWDPEAIDVIRNSLKSLGILDFTPDAKVIYNDKFVPVKL*
Ga0137412_1106841523300015242Vadose Zone SoilAIDVIRSSLKELGILPAIPEAKALYTDRFVPVRF*
Ga0132258_1082558013300015371Arabidopsis RhizospherePKAIEVIRHSLKELGILPEVPEAKALYNDKFVPVKF*
Ga0132256_10247149323300015372Arabidopsis RhizosphereDAEVNGFSRDGSWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL*
Ga0132257_10040897623300015373Arabidopsis RhizosphereSPDGAWSPVAIDVIRHSLKELGILATVPEAKAIYNDKFVPVKF*
Ga0132257_10258764823300015373Arabidopsis RhizosphereIGDFSTDGAWDPQSIDVIRNSLKDLGILDVVPDAKVIYNDKFVPVKF*
Ga0182036_1149205913300016270SoilAQIAGFSLDGTWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0182034_1094582213300016371SoilGAWDPEAIDVIRGSLKELGILPTVPEAKVLYNDKFVPVRF
Ga0182040_1002296213300016387SoilAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0182037_1008438223300016404SoilSADGAWDPEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0182039_1100682723300016422SoilDFSADGAWDPQAIDTIRNSLKDLGILNFVPEAKMIYNDKFVPVKF
Ga0182039_1147509213300016422SoilAQMTGFSADGAWDPKAIEVIRFSLKELGILPNVPDAKALYNDKFVPVKF
Ga0184621_1026976913300018054Groundwater SedimentTQMAHFSIDGAWDPVAIDVIRNSLKELGILDFIPEAKVIYNDKFVPVNL
Ga0190268_1185621013300018466SoilNGFSSDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKF
Ga0190270_1008438943300018469SoilESIEVIRRSLKDLGILDSLPDARTIYNDKFVPVKF
Ga0066669_1217960813300018482Grasslands SoilIANFSTDGAWDPVAIDVIRNSLKELGILDFIPEAKVIYNDKFVPVNL
Ga0210399_1131964013300020581SoilAQIGGFSNDGAFDPTAIDVIRRSLKELGILPAVPEAKSIYSDKFVPVRF
Ga0210400_1040738623300021170SoilFSVDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0210400_1046517413300021170SoilIAGFSADGAWDPKAIEVIRHSLKDLGILPSVPDAKAIYNDKFVPVKF
Ga0210400_1132903413300021170SoilAWDPAAIDVIRNSLKDLGILDTVPDAKTIYNDKFVPVKF
Ga0210405_1069272413300021171SoilEAIDVIRASLKELGILPAIPDAKALYTDKFVPVRF
Ga0210396_1053031423300021180SoilSDGAWDPAAIDVIRNSLKDLGILDTVPAAKTLYNDQFVPVKF
Ga0210397_1077373613300021403SoilEMPGFSIDGTWDPEVIDVIRASLKELDILPKIPDAKALYTDAFVPVRF
Ga0210391_1132230023300021433SoilEAIDVIRSSLKELGILPTVPDAKALYNDKFVPVRF
Ga0210410_1139334923300021479SoilSFSSDGAWDPVAIDAIRNSLKELGILDSVPDAKTIYNDKFVPVKF
Ga0126371_1019144513300021560Tropical Forest SoilVSIDVIRKSLKELGILDTIPDAKSIYNDKFVPVKF
Ga0222623_1036705223300022694Groundwater SedimentPAAIEVIRKSLKELGILDSLPDARTIYNDQFVPVKL
Ga0209234_130286423300026295Grasslands SoilDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0209268_105652423300026314SoilISGFSADGAWNPAAIDVIRHSLKELGILSVVPEAKAISNDQFVPVRF
Ga0257155_104841323300026481SoilWDPEAIDVIRSSLKELGILPTIPDAKALYTDRFVPVRF
Ga0257161_102440913300026508SoilAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0257168_108397123300026514SoilWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0209805_132675823300026542SoilVDGTWDAQSIDVIRNSLKDLGILNFVPEAKTIYNDKFVPVRF
Ga0208995_108815023300027388Forest SoilAGCSPDGAWSPVAIDVIRHSLKELGILNTVPDAKTIYNDAFVPVTF
Ga0209466_101865013300027646Tropical Forest SoilAQIAGFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0209466_102780823300027646Tropical Forest SoilSDGAWSPVAIDVIRHSLKELGILPVVPEAKTIYNDKFVPVKF
Ga0207826_122274413300027680Tropical Forest SoilFSADGAWDGKAIEVIRQSLKELGILPEVPDAKDLYNDQFVPVTF
Ga0209447_1020282723300027701Bog Forest SoilADGAWDPEAIDVIRASLKELGTLPTVPDAKALYTDKFVPVRF
Ga0209060_1054993413300027826Surface SoilWDPVSIDAILKSLKDLGIVETIPDAKSIYNDKFVPVKF
Ga0209624_1099211313300027895Forest SoilMSSATSTDGAWDKEAIDVIRASLKDLGILPAVPDAKALYTDKFVPVRF
Ga0209382_1118019223300027909Populus RhizosphereSGDGAWDPVAIEVIRKSLKDLGILDSLPDARTIYNDKFVPVKL
Ga0307284_1043226423300028799SoilSADGAWDMQSIDVIRNSLKDLGILDFVPEAKVIYNDKFVPVKF
Ga0308309_1068144023300028906SoilSTDGAWDPAAIDVIRNSLKDLGILDTVPEAKTIYNDKFVPVKF
Ga0311354_1037582423300030618PalsaGGFSADGAWDPEAIDVIRASLKELGTLPTIPDAKMLYNDKFVPVRF
Ga0318534_1006218823300031544SoilLAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318534_1052714723300031544SoilPEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0318541_1000484353300031545SoilAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318528_1054225223300031561SoilHGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318528_1066355723300031561SoilAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318572_1058251813300031681SoilFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318500_1020847513300031724SoilGFSADGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0306918_1093340513300031744SoilADGTFNPAAIEVIRHSLKELGILNAVPEAKTIYNDKFVPVKY
Ga0306918_1109731323300031744SoilPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318535_1004906823300031764SoilGFSVDGAWSPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318526_1034733123300031769SoilGAWDPEAIDVIRASLKELGTLPTVPDAKAIYNDKFVPVKLQ
Ga0318565_1027208813300031799SoilPAAIDVIRHSLKELGILAAVPEAKAIYNDQFVPVRF
Ga0318517_1029499323300031835SoilGFSLDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318517_1038616423300031835SoilQIAGFSVDGAWSPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0306925_1035997213300031890SoilWDSRAMNAIAASLKELGILPVVPDAKALYTDKFVPVKF
Ga0306923_1046602113300031910SoilTQIGSFSSDGVWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0306923_1216806613300031910SoilADGAWDPQAIDVIRNSLKELGILNFVPEAKTIYNDKFVPVKF
Ga0310913_1051221913300031945SoilFSSDGAWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0310909_1090039613300031947SoilQIGDFSADGAWDPQAIDVIRNSLKDLGILNFVPEAKTIYNDKFVPVKF
Ga0318530_1028361523300031959SoilAAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0318553_1014691923300032068SoilAWNPAAIDVIRHSLKELGILGAVPEAKAIYNDQFVPVRF
Ga0308173_1212473013300032074SoilVYDTQIGSFSTDGAWDPEAIDVIRNSLKSLGILDFTPDAKTIYNDKFVPVKL
Ga0311301_1055491423300032160Peatlands SoilDPEAIDVIRSSLKELGILPTIPDAKALYTDKFVPVRF
Ga0307471_10235979923300032180Hardwood Forest SoilKAIEVIRHSLKDLGILPDVPDAKAIYNDKFVPVKF
Ga0335082_1094452723300032782SoilLSAFSTDGSFDPKAIEVIRRSLKELGILDFEPDPKTLYNDTFVPVKF
Ga0310914_1027768313300033289SoilGSFSSDGVWDPVAIDVIRNSLKELGILDHVPDAKSIYNDQFVPVKL
Ga0310914_1140142023300033289SoilVAIDVIRHSLKELGILNAVPDARTIYNDRFVPVKF


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