Metagenome / Metatranscriptome Family F079001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079001
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	46 residues
Representative Sequence	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGNRISCY
Number of Associated Samples	105
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.05 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	87.07 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.034 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (30.172 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.828 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF08734	GYD	47.41
PF13673	Acetyltransf_10	3.45
PF00753	Lactamase_B	2.59
PF14659	Phage_int_SAM_3	1.72
PF00916	Sulfate_transp	1.72
PF12833	HTH_18	1.72
PF13328	HD_4	0.86
PF00165	HTH_AraC	0.86
PF13508	Acetyltransf_7	0.86
PF14534	DUF4440	0.86
PF03989	DNA_gyraseA_C	0.86
PF00248	Aldo_ket_red	0.86
PF00378	ECH_1	0.86
PF00266	Aminotran_5	0.86
PF01008	IF-2B	0.86
PF02163	Peptidase_M50	0.86
PF11138	DUF2911	0.86
PF00155	Aminotran_1_2	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	47.41
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	1.72
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	1.72
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	1.72
COG0182	5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit	Amino acid transport and metabolism [E]	0.86
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.86
COG1184	Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	Translation, ribosomal structure and biogenesis [J]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.03 %
Unclassified	root	N/A	18.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.03 %
Unclassified	root	N/A	18.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.03 %
Unclassified	root	N/A	18.97 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	42.24 %
Unclassified	root	N/A	18.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	42.24 %
Unclassified	root	N/A	18.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	32.76 %
Unclassified	root	N/A	18.97 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.76 %
Unclassified	root	N/A	18.97 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.59 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.76 %
Unclassified	root	N/A	18.97 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.59 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.76 %
Unclassified	root	N/A	18.97 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.72 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.86 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	32.76 %
Unclassified	root	N/A	18.97 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.72 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.86 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17307818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2731	Open in IMG/M
2170459009\|GA8DASG02H25Z8	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
2170459014\|G1P06HT02H95Q3	Not Available	649	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101288866	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101289201	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300000559\|F14TC_100726477	Not Available	594	Open in IMG/M
3300002899\|JGIcombinedJ43975_10011784	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300003911\|JGI25405J52794_10114373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300004114\|Ga0062593_102294107	Not Available	607	Open in IMG/M
3300004463\|Ga0063356_102436781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	801	Open in IMG/M
3300004479\|Ga0062595_101091846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300005338\|Ga0068868_101540753	Not Available	623	Open in IMG/M
3300005365\|Ga0070688_100356832	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300005434\|Ga0070709_10408730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1015	Open in IMG/M
3300005437\|Ga0070710_10586972	Not Available	774	Open in IMG/M
3300005440\|Ga0070705_100861646	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300005467\|Ga0070706_102118982	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005518\|Ga0070699_102199621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300005529\|Ga0070741_11116265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	669	Open in IMG/M
3300005546\|Ga0070696_100429388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1039	Open in IMG/M
3300005552\|Ga0066701_10401921	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005558\|Ga0066698_10412135	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300005564\|Ga0070664_102182229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300006163\|Ga0070715_10005605	All Organisms → cellular organisms → Bacteria	4200	Open in IMG/M
3300006175\|Ga0070712_101692035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300006791\|Ga0066653_10209916	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	988	Open in IMG/M
3300006791\|Ga0066653_10474607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300006796\|Ga0066665_10518233	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300006796\|Ga0066665_11544361	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300006844\|Ga0075428_101159741	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300006871\|Ga0075434_100388925	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300009012\|Ga0066710_101053186	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300009012\|Ga0066710_103264987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300010038\|Ga0126315_10767373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	633	Open in IMG/M
3300010043\|Ga0126380_10745383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	794	Open in IMG/M
3300010046\|Ga0126384_10995206	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300010321\|Ga0134067_10426159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300010326\|Ga0134065_10295711	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300010358\|Ga0126370_11688165	Not Available	609	Open in IMG/M
3300010359\|Ga0126376_12470308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	567	Open in IMG/M
3300010361\|Ga0126378_11154864	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300010361\|Ga0126378_11939980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300010366\|Ga0126379_13618348	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300010373\|Ga0134128_10487785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1374	Open in IMG/M
3300011444\|Ga0137463_1349081	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300012021\|Ga0120192_10149327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300012180\|Ga0153974_1118003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	610	Open in IMG/M
3300012198\|Ga0137364_10074013	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300012198\|Ga0137364_11295218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300012202\|Ga0137363_11638189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300012205\|Ga0137362_11142158	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300012206\|Ga0137380_10028472	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5149	Open in IMG/M
3300012207\|Ga0137381_10027654	All Organisms → cellular organisms → Bacteria	4550	Open in IMG/M
3300012207\|Ga0137381_11398072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300012208\|Ga0137376_10340879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1301	Open in IMG/M
3300012209\|Ga0137379_11261466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300012210\|Ga0137378_10991175	Not Available	754	Open in IMG/M
3300012355\|Ga0137369_10312403	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300012356\|Ga0137371_11246713	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300012360\|Ga0137375_10424334	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300012362\|Ga0137361_11334117	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300012362\|Ga0137361_11379173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300012532\|Ga0137373_10154670	All Organisms → cellular organisms → Bacteria	1931	Open in IMG/M
3300012532\|Ga0137373_10737597	Not Available	732	Open in IMG/M
3300012683\|Ga0137398_10005216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6074	Open in IMG/M
3300012922\|Ga0137394_10244848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1533	Open in IMG/M
3300012923\|Ga0137359_11057070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	695	Open in IMG/M
3300012925\|Ga0137419_10513341	Not Available	953	Open in IMG/M
3300012960\|Ga0164301_11059745	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300012988\|Ga0164306_11801440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300013297\|Ga0157378_11426328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300015371\|Ga0132258_12330543	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300015374\|Ga0132255_100197304	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300015374\|Ga0132255_101028517	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300016387\|Ga0182040_11697825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300018028\|Ga0184608_10012751	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300018056\|Ga0184623_10316955	Not Available	702	Open in IMG/M
3300018431\|Ga0066655_10808238	Not Available	638	Open in IMG/M
3300019877\|Ga0193722_1022541	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300019888\|Ga0193751_1124872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	954	Open in IMG/M
3300020006\|Ga0193735_1059658	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1119	Open in IMG/M
3300021560\|Ga0126371_10377822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1556	Open in IMG/M
3300022694\|Ga0222623_10305153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300022756\|Ga0222622_10096468	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300023261\|Ga0247796_1092475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300025315\|Ga0207697_10109344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1183	Open in IMG/M
3300026023\|Ga0207677_12143434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300026277\|Ga0209350_1014227	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300026314\|Ga0209268_1002585	All Organisms → cellular organisms → Bacteria	8543	Open in IMG/M
3300026316\|Ga0209155_1003288	All Organisms → cellular organisms → Bacteria	7323	Open in IMG/M
3300026317\|Ga0209154_1081879	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300026326\|Ga0209801_1072375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1524	Open in IMG/M
3300026532\|Ga0209160_1009124	All Organisms → cellular organisms → Bacteria	7410	Open in IMG/M
3300026547\|Ga0209156_10277761	Not Available	764	Open in IMG/M
3300027018\|Ga0208475_1013848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	787	Open in IMG/M
3300027548\|Ga0209523_1033279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1037	Open in IMG/M
3300027552\|Ga0209982_1041939	Not Available	731	Open in IMG/M
3300028380\|Ga0268265_10564232	Not Available	1083	Open in IMG/M
3300028719\|Ga0307301_10156604	Not Available	734	Open in IMG/M
3300028787\|Ga0307323_10194080	Not Available	733	Open in IMG/M
3300030916\|Ga0075386_12034054	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300031231\|Ga0170824_113627836	Not Available	657	Open in IMG/M
3300031474\|Ga0170818_107549508	Not Available	609	Open in IMG/M
3300031474\|Ga0170818_107550030	Not Available	594	Open in IMG/M
3300031719\|Ga0306917_11166210	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031736\|Ga0318501_10535642	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031912\|Ga0306921_11087420	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300031954\|Ga0306926_11130584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	924	Open in IMG/M
3300032001\|Ga0306922_10588350	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1180	Open in IMG/M
3300032035\|Ga0310911_10659911	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300032059\|Ga0318533_11434941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300032180\|Ga0307471_104234962	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300032205\|Ga0307472_102487847	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.21%
Host-Associated	Host-Associated	12.93%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.03%
Plants	Host-Associated → Plants	12.07%
Aquatic	Environmental → Aquatic	5.17%
Fungi	Host-Associated → Fungi	0.86%
Solid Waste	Engineered → Solid Waste	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.62%
Sediment	Environmental → Aquatic → Sediment	5.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.45%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%
Grass	Engineered → Solid Waste → Grass	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.83%
Loam	Environmental → Terrestrial → Soil → Loam	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%
Composting	Engineered → Solid Waste → Grass → Composting	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02726150	2088090014	Soil	MNPKRIGFLGFEGVAASELVRAADVLAAATLDGGYGSWISCYHVCTIGFTS
F47_02690040	2170459009	Grass Soil	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGNRISCY
2PV_02652440	2170459014	Switchgrass, Maize And Mischanthus Litter	MNPKRIGFLGFDGVAASDLTRAADVFAAATLDGGYGNRISC
INPhiseqgaiiFebDRAFT_1012888661	3300000364	Soil	MLAKRIGFLGFDGVTASHLVTPADTFAIATLDSGYGNRIRCYQTYTIGLNSEPFRA
INPhiseqgaiiFebDRAFT_1012892011	3300000364	Soil	MLAKRIGFLGFEGVTASDLVAPADTFAIATLDSGYGNRIPCYQTYTIGLTSEPF
F14TC_1007264771	3300000559	Soil	MNPXXIGFLGFEGVAASELTRAADALAAAILDGGYGNRISCY
JGIcombinedJ43975_100117844	3300002899	Soil	MNPKRIGFLGFEGVAASELTRAADALAAAILDGGYGNRISCYHVCTIGLASEC
JGI25405J52794_101143732	3300003911	Tabebuia Heterophylla Rhizosphere	MNPKRVGFLGFDGVAASELTRAADVIAAASLDGGYGNRIACYQINMI
Ga0062593_1022941072	3300004114	Soil	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGNRISCYHVCTI
Ga0063356_1024367811	3300004463	Arabidopsis Thaliana Rhizosphere	MNPKRIGFLGFDGVHASDLTRAADVFAAATLDGGYGNRISCYHVCTIGFAFECFRSES
Ga0062595_1010918461	3300004479	Soil	MQPKRIGLVGFDGVAASDLMLAADVFAGATLDGGYGNRLSCYHISMIGFSFEI
Ga0068868_1015407531	3300005338	Miscanthus Rhizosphere	MSYQVLRTMRYHGPGRAMNPKRIGFLGFEGVAASELTRAADVLAAATLDGGY
Ga0070688_1003568323	3300005365	Switchgrass Rhizosphere	MLAKRIGFLGFENVTASDLVTPADIFAIAKLDSGYGNPIQCYQTYFIGLTSE
Ga0070709_104087303	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKRIGFLGFEDVAASELTRAADVLAAATLDGGYGNRISCYQVSTIGFTSECFR
Ga0070710_105869722	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYQINTIGFTSECFR
Ga0070705_1008616461	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLPKRIGFLGFDGVTACHLVGPADTFASAALDDGYGNRISCYQICTIGL
Ga0070706_1021189822	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLAKRIGFLGFEGVTASDLVVPADTFAIATLDSGYGNRIPC
Ga0070699_1021996211	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKRIGFLGFESVAASDLAEAADVFAAAVLDAGYGNRLSC
Ga0070741_111162651	3300005529	Surface Soil	MNPKLIGFLGFEGVAASELTLAADVLAAATLDGGYGNRISCY*
Ga0070696_1004293881	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKRIGFLGFEGVAASNLTDAADVFAAAVLDGGYGSRIS
Ga0066701_104019211	3300005552	Soil	MLPKRIGFLGFESVTASHFVIPADTFAAATLDTGYGRCIPCYQTYTIGVTP
Ga0066661_105034231	3300005554	Soil	MLPKRIGFLGFESVTASHFVIPADTFAAATLDTGYGRCIPCY
Ga0066698_104121352	3300005558	Soil	MVAKRIGFLGFEGVAASNLAGAADVFAAAVLDGGYGNR
Ga0070664_1021822292	3300005564	Corn Rhizosphere	MNTKRIGFLGFEDISASDLTGAADVFAAATLDGGYGTRISCYQVCTIGFSSE
Ga0070715_100056051	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLAKRIGFLGFESVTASHLVTPVDTFALAALDSGYGDRIPCYKTCTIGLNSEPFRAE
Ga0070712_1016920352	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKRIGFLGFTGVAASELTSAVDVFAAATLDGGYGNR
Ga0066653_102099163	3300006791	Soil	MVPKRIGFLGFEGVAASNLAGSADVFATGVLDGGYG
Ga0066653_104746073	3300006791	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRI
Ga0066665_105182331	3300006796	Soil	MVPKRIGFLGFEGVAASNLAGSADVFAAAVLDGGY
Ga0066665_115443611	3300006796	Soil	MNPKRIGFVGFEGVAASELARAADVLAAATLDGGYGNRISCYQISTIGFT
Ga0075428_1011597411	3300006844	Populus Rhizosphere	MNPKRIGFLGFDGVAASELTRAADVIAAASLDGGYGNRIACYQINMIGFTSECF
Ga0075434_1003889253	3300006871	Populus Rhizosphere	MNPKRIGFLGFDGAAASDLTRAADVFATATLDGGYGNRISCYHVCTIG
Ga0066710_1010531864	3300009012	Grasslands Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCY
Ga0066710_1032649872	3300009012	Grasslands Soil	MVPKRIGFLAFEDVAASNLTGAADVFAAAVLDGGYGNRISCYQIC
Ga0099829_106194522	3300009038	Vadose Zone Soil	MLAKRIGFLGFEGVTASHLVAPADAFAVATLDSGYGDPIPCYQ
Ga0126315_107673732	3300010038	Serpentine Soil	MKPKRIGFLGFERVAASDLTRAADVFAAATLDGGYGNRISCY
Ga0126380_107453831	3300010043	Tropical Forest Soil	MNPKRLGFLGFEGVSTSDLTLAADVFAAATLDGGY
Ga0126384_109952062	3300010046	Tropical Forest Soil	MNPKRIGFLGFEGASASDLTSAVDVFAAATLDGGYGNRISCYQVCTIGLSSDYFRSDSG
Ga0134067_104261591	3300010321	Grasslands Soil	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISC
Ga0134065_102957111	3300010326	Grasslands Soil	MVPKRIGFLGFEGVTASHLAGPADTFAAAALEDGYGNSISCYQICTLG
Ga0126370_116881652	3300010358	Tropical Forest Soil	MNPKRIGILGFDGVAASDLVRAADVFTAATLDGGYGNR
Ga0126376_124703081	3300010359	Tropical Forest Soil	MSPKLVGFLGFDGVAASELTRAADVFAAATLHGGYGN
Ga0126378_111548642	3300010361	Tropical Forest Soil	MSPKLVGFLGFDGVAASELTRAADVFAAATLHGGYGNRISCYQIT
Ga0126378_119399803	3300010361	Tropical Forest Soil	MNPKRIGFLGFEGVAASDLSRAADVFAAATLDGGYGDRMSCYHVC
Ga0126379_136183482	3300010366	Tropical Forest Soil	MNPKRIGFLGFEGVAASDLTRAADVFAAATLDGGYGNRILCYHVCTIGFAFECFRS
Ga0134128_104877853	3300010373	Terrestrial Soil	MNPKRIGFLGFTGVAASELTSAVDVFAAATLDGGYGNRMSCYHVCTIGFTSECFRSES
Ga0137463_13490812	3300011444	Soil	MVPKRIGFLGFEGVTASHLAGPADTFAAAALEDGYGNTISCYQICTL
Ga0120192_101493271	3300012021	Terrestrial	MNPKRIGFLGFEGVAASELTRAVDVFAAATLDGGYGNRISCYQICTIGFDSEYFRAES
Ga0153974_11180032	3300012180	Attine Ant Fungus Gardens	MSPKRIGFLSFEGVAASELTRAADVFAAASLDGGYGNRISCYHVCTIGFAFECFRSESGI
Ga0137364_100740131	3300012198	Vadose Zone Soil	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGYGNRI
Ga0137364_112952182	3300012198	Vadose Zone Soil	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGY
Ga0137363_116381891	3300012202	Vadose Zone Soil	MNPKRIGFLGFEGVAASDLTRAADAFTGVTLDGGYG
Ga0137362_111421581	3300012205	Vadose Zone Soil	MNPKRIGFLGFDGVAASDLTRAADVFGAATLDGGYGNRISCYHVC
Ga0137380_100284721	3300012206	Vadose Zone Soil	MVPKRIGFVGFEGVAASNLAGSADVFSAAVLDGGYGNRISCYQICTIG
Ga0137381_100276541	3300012207	Vadose Zone Soil	MVPKRIGFLGFEGVAASNLAGSADVFAAAVLDGGYGTRISCYQICTIGFSS
Ga0137381_113980721	3300012207	Vadose Zone Soil	MNPKRIGFLGFEGVVASDLMLAADVFAAAMLDGGY
Ga0137376_103408791	3300012208	Vadose Zone Soil	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYHVC
Ga0137379_112614662	3300012209	Vadose Zone Soil	MVPKRIGFVGFEGVAASNLAGSADVFSAAVLDGGYG
Ga0137378_109911752	3300012210	Vadose Zone Soil	MNPKQIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYHVCTIGFTSERFRSESG
Ga0137369_103124031	3300012355	Vadose Zone Soil	MNPKLIGFLGFEGVAASELTRAADVLAAATLDGGYGSRISCYHVCTIGLTSE
Ga0137371_112467131	3300012356	Vadose Zone Soil	MVAKRIGFLGFEGVAASNLVGAADVFATGVLDGGYGTRISCYQICTIGVSSEWLRAES
Ga0137375_104243342	3300012360	Vadose Zone Soil	MNPKLIGFLGFEGVAASELTRAADVLAAATLDGGYGSRISCYHVCTIGL
Ga0137361_113341171	3300012362	Vadose Zone Soil	MLAKRIGFLGFESVTASHLVTPVDTFALAALDSGYGDRIPCYKTCTIGLNS
Ga0137361_113791731	3300012362	Vadose Zone Soil	MLAKRIGFLGFEGVTASDLVAPADTFAIATLDSGYGNRIPCYQTYTIG
Ga0137373_101546701	3300012532	Vadose Zone Soil	MNPKLIGFLGFEGVAASELTRAADVLAAAALDGGYGNRISCYQISVIGFTSECFRAE
Ga0137373_107375971	3300012532	Vadose Zone Soil	MNPKRVGFLGFEGVAASELTRAADVLAAATLDGGYGNRFSCYHVCTIGFT
Ga0137398_100052168	3300012683	Vadose Zone Soil	MNPKRIGFLGFEGVAASDLTRAADAFTGVTLDGGY
Ga0137394_102448484	3300012922	Vadose Zone Soil	MNPKRIGFLGFEGVAASELVRAADVLAAATLDGGYGSRI
Ga0137359_110570703	3300012923	Vadose Zone Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYQISTIGFTSECFRA
Ga0137419_105133413	3300012925	Vadose Zone Soil	MKPKRIGFLGFEGVAASNLTDAADVFAAATLDGGYGSR
Ga0164301_110597452	3300012960	Soil	MSLKLVGFLGFDGVAESELTRAADVFAAATLHGGYG
Ga0164306_118014401	3300012988	Soil	MSPKLVGFLGFDGVAASELTLAADVFAAATLHGGYGNRIS
Ga0157378_114263281	3300013297	Miscanthus Rhizosphere	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYQVCTIGFT
Ga0132258_123305431	3300015371	Arabidopsis Rhizosphere	MNPKLIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYQVCIIGFTSESFHAESGI
Ga0132255_1001973046	3300015374	Arabidopsis Rhizosphere	MNPKRIGFLGFEGVAASELTRAADVLAAAPLDGGYGNRISCYQVCTIGFTSECF
Ga0132255_1010285171	3300015374	Arabidopsis Rhizosphere	MNTKRIGFLGFEDISASDLTGAADVFAAATLDGGYGTRISCYQVCTIGFSSERLRSESG
Ga0182040_116978252	3300016387	Soil	MLPKRIGFLGFDGVAASNLVDALDVFATAVLDGGYGNRISCYRI
Ga0184608_100127515	3300018028	Groundwater Sediment	MNPKRIGFLGFEGVTSSHLVGPADTFAAAALDGGYGNPIPCYQICTIGLTP
Ga0184623_103169551	3300018056	Groundwater Sediment	MRYLGSRRAMNPKRIGFLGFEGVAASELTRAADVLAVATLDGGYGNRISC
Ga0184635_103804961	3300018072	Groundwater Sediment	VIEQMVPKRIGFLGFEGVTASHLAGPADTFAAAALEDGYGNTISCYQ
Ga0066655_108082381	3300018431	Grasslands Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGRYGNRDFVLPDQHDRLYFR
Ga0193722_10225411	3300019877	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYQISTIGFTSECFR
Ga0193751_11248721	3300019888	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYEISTIGFTSECFR
Ga0193735_10596583	3300020006	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYHVCTIGFTSECFHAESGIGF
Ga0126371_103778221	3300021560	Tropical Forest Soil	MNPKRIGFLGFEGVAASDLSRAGDVFAAASLDTGYGNP
Ga0222623_103051532	3300022694	Groundwater Sediment	MVSLTMNPKRIGFLGFEGVTSSHLVGPADTFAAAALDGGYGNRISC
Ga0222622_100964681	3300022756	Groundwater Sediment	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGNRISCYHVCTIGFTSECFHAESGIGF
Ga0247796_10924751	3300023261	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNRISCYHVCTIG
Ga0207697_101093442	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKRIGFLGFEGVAASELARAADVLAAATLDGGYGSRISCYHV
Ga0207677_121434341	3300026023	Miscanthus Rhizosphere	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGNRISC
Ga0209350_10142275	3300026277	Grasslands Soil	MAARRSMNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYGNR
Ga0209268_100258512	3300026314	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGRYGNRDFVLPDQH
Ga0209155_10032881	3300026316	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGRYGNRDFVL
Ga0209154_10818791	3300026317	Soil	MNPKRIGFLGFDGVAASDLTRAADVFGAATLDGGYGNRI
Ga0209801_10723753	3300026326	Soil	MIAKRIGFLGFEGVAASNLAGAADVFAAAVLDGGYGNR
Ga0209160_10091241	3300026532	Soil	MAARRSMNPKRIGFLGFEGVAASELTRAADVLAAATL
Ga0209156_102777612	3300026547	Soil	MNPKRIGFLGFEGVAASELTRAADVLAAATLDGGYG
Ga0208475_10138482	3300027018	Soil	MLPKRIGFLGFESVAASNLADAADIFAAAALDGGYGNRISCYEICTIGFS
Ga0209523_10332791	3300027548	Forest Soil	MNPKRIGFLGFEGVAASNLTDAADVFAAAVLDGGYGSRISCYQVCTIGFSYECF
Ga0209982_10419391	3300027552	Arabidopsis Thaliana Rhizosphere	MNPKRIGFLGFDGVAASDLTRAADIFAAATLDGGYGN
Ga0268265_105642323	3300028380	Switchgrass Rhizosphere	MNPKRIGFLGFDGVTSLHFVGPADTFASVALDGGYGSRIPCYQICTIGLTPEPFRAE
Ga0307301_101566041	3300028719	Soil	MLPKRIGFLGFESVAASNLADAADIFAAAALDGGYGNRISCYEICTIGFSSECF
Ga0307323_101940801	3300028787	Soil	MNPKRIGFLGFEGVAASELTRAADVFAAATLDGGYGN
Ga0075386_120340541	3300030916	Soil	MSPKLVGFLGFDGVAASELTRAADVFAAATLHGGYGNRISCYQIS
Ga0170824_1136278362	3300031231	Forest Soil	MNPKRIGFLGFDGVAASELTRAADVLTAAALDGGYGNRISCYQISTIGFASECFRGESG
Ga0170818_1075495081	3300031474	Forest Soil	MNPKRIGFLGFDGVAAAELTRAADVLAAAALDGGYGNRI
Ga0170818_1075500301	3300031474	Forest Soil	MNPKRTGFLGFKGVAASELTRAADVLAAAALDGGYG
Ga0306917_111662101	3300031719	Soil	MSPKLVGFLGFDGVAASELTRAADVFAAATLHGGYGNRISCYQITMI
Ga0318501_105356421	3300031736	Soil	MLPKRIGFLGFDGVAASDLVESLDVFATAVLDGGYGNRISCYRICIIGLT
Ga0306921_110874201	3300031912	Soil	MNPKRIGILGFESVIASHITGPADAFTATTLDNGY
Ga0306926_111305842	3300031954	Soil	MLPKRIGFLGFDGVAASNLVEALDVFATAVLDGGYGNRISCYRICIIGLTSECFRAES
Ga0306922_105883501	3300032001	Soil	MLPKRIGFLGFDGVAASDLVESLDVFATAVLDGGYGNRIS
Ga0310911_106599112	3300032035	Soil	MLPKRIGFLGFDGVAASNLVEALDVFATAVLDGGYGNRISCYQICII
Ga0318533_114349411	3300032059	Soil	MSPKLVGFLGFDGVAASELTRAADVFAAATLHGGYG
Ga0307471_1042349621	3300032180	Hardwood Forest Soil	MLAKRIGFLGFESVTASHLVTPVDTFALAALDSGYGDRIPCYKTCTIGLNAEP
Ga0307472_1024878471	3300032205	Hardwood Forest Soil	MSPKLVGLLGFDGVAASELTPAADVFAAATLHGGYGNRISCY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences