Metagenome / Metatranscriptome Family F078962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	87 residues
Representative Sequence	SIRVDVVLSDMHLSDGTGVGLLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFAKVLEEMARHLGSAAKG
Number of Associated Samples	83
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.52 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	77.59 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (29.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.241 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.45% β-sheet: 16.36% Coil/Unstructured: 58.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07238	PilZ	18.10
PF11154	DUF2934	11.21
PF14520	HHH_5	6.03
PF04366	Ysc84	6.03
PF04237	YjbR	3.45
PF00582	Usp	2.59
PF13180	PDZ_2	2.59
PF04972	BON	1.72
PF02371	Transposase_20	0.86
PF13442	Cytochrome_CBB3	0.86
PF08327	AHSA1	0.86
PF04023	FeoA	0.86
PF00754	F5_F8_type_C	0.86
PF08459	UvrC_RNaseH_dom	0.86
PF03460	NIR_SIR_ferr	0.86
PF01012	ETF	0.86
PF17131	LolA_like	0.86
PF08840	BAAT_C	0.86
PF13596	PAS_10	0.86
PF00194	Carb_anhydrase	0.86
PF00027	cNMP_binding	0.86
PF02481	DNA_processg_A	0.86
PF00732	GMC_oxred_N	0.86
PF07168	Ureide_permease	0.86
PF00581	Rhodanese	0.86
PF06736	TMEM175	0.86
PF01329	Pterin_4a	0.86
PF11752	DUF3309	0.86
PF00196	GerE	0.86
PF14690	zf-ISL3	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	6.03
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	3.45
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	1.72
COG0322	Excinuclease UvrABC, nuclease subunit	Replication, recombination and repair [L]	0.86
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	0.86
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.86
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.86
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.86
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.86
COG3338	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.86
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.86
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.17 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.72 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.59 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.72 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.59 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.72 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.86 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.72 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.86 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1.72 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.86 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.86 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.59 %
Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1.72 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.86 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.86 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908038\|B3_all_c_ConsensusfromContig10411	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
2140918008\|ConsensusfromContig12923	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
2170459023\|GZGNO2B01DGWEN	Not Available	521	Open in IMG/M
3300002245\|JGIcombinedJ26739_100121047	All Organisms → cellular organisms → Bacteria → Acidobacteria	2464	Open in IMG/M
3300002245\|JGIcombinedJ26739_101412425	Not Available	589	Open in IMG/M
3300003350\|JGI26347J50199_1011848	Not Available	886	Open in IMG/M
3300004091\|Ga0062387_100096842	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300004091\|Ga0062387_100140632	All Organisms → cellular organisms → Bacteria → Acidobacteria	1374	Open in IMG/M
3300004091\|Ga0062387_100467668	Not Available	871	Open in IMG/M
3300004092\|Ga0062389_100479123	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300004092\|Ga0062389_103081310	Not Available	624	Open in IMG/M
3300004635\|Ga0062388_102209798	Not Available	573	Open in IMG/M
3300005541\|Ga0070733_10325337	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005602\|Ga0070762_10227081	Not Available	1152	Open in IMG/M
3300005602\|Ga0070762_11245359	Not Available	515	Open in IMG/M
3300005610\|Ga0070763_10484534	Not Available	705	Open in IMG/M
3300005610\|Ga0070763_10979998	Not Available	506	Open in IMG/M
3300005712\|Ga0070764_10002650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	8154	Open in IMG/M
3300005921\|Ga0070766_10376275	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300005921\|Ga0070766_10433275	Not Available	866	Open in IMG/M
3300006052\|Ga0075029_100280037	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300006176\|Ga0070765_100649025	Not Available	996	Open in IMG/M
3300006176\|Ga0070765_100718376	Not Available	944	Open in IMG/M
3300006176\|Ga0070765_101044636	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300009093\|Ga0105240_10412982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1518	Open in IMG/M
3300009093\|Ga0105240_11534423	Not Available	698	Open in IMG/M
3300009519\|Ga0116108_1163757	Not Available	658	Open in IMG/M
3300009640\|Ga0116126_1127085	Not Available	877	Open in IMG/M
3300009672\|Ga0116215_1027635	All Organisms → cellular organisms → Bacteria → Acidobacteria	2618	Open in IMG/M
3300009762\|Ga0116130_1043458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1435	Open in IMG/M
3300010379\|Ga0136449_101700387	Not Available	951	Open in IMG/M
3300011120\|Ga0150983_13396284	Not Available	999	Open in IMG/M
3300011120\|Ga0150983_13774993	Not Available	623	Open in IMG/M
3300011120\|Ga0150983_15583257	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	603	Open in IMG/M
3300012363\|Ga0137390_10459040	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300014156\|Ga0181518_10540943	Not Available	548	Open in IMG/M
3300014158\|Ga0181521_10308940	Not Available	808	Open in IMG/M
3300014489\|Ga0182018_10001234	All Organisms → cellular organisms → Bacteria	29706	Open in IMG/M
3300014489\|Ga0182018_10038445	Not Available	2992	Open in IMG/M
3300014489\|Ga0182018_10060425	All Organisms → cellular organisms → Bacteria → Acidobacteria	2290	Open in IMG/M
3300014489\|Ga0182018_10317255	Not Available	844	Open in IMG/M
3300014495\|Ga0182015_10001573	All Organisms → cellular organisms → Bacteria	29697	Open in IMG/M
3300014495\|Ga0182015_10190347	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1376	Open in IMG/M
3300014495\|Ga0182015_10456268	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300014501\|Ga0182024_10013236	All Organisms → cellular organisms → Bacteria	16156	Open in IMG/M
3300014501\|Ga0182024_10047840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6847	Open in IMG/M
3300014501\|Ga0182024_10053394	All Organisms → cellular organisms → Bacteria	6358	Open in IMG/M
3300014501\|Ga0182024_10059926	All Organisms → cellular organisms → Bacteria	5890	Open in IMG/M
3300014501\|Ga0182024_10921303	Not Available	1051	Open in IMG/M
3300014501\|Ga0182024_11644340	Not Available	726	Open in IMG/M
3300014638\|Ga0181536_10210553	Not Available	960	Open in IMG/M
3300014839\|Ga0182027_11043959	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300015195\|Ga0167658_1062791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	881	Open in IMG/M
3300017940\|Ga0187853_10502814	Not Available	529	Open in IMG/M
3300018003\|Ga0187876_1022168	All Organisms → cellular organisms → Bacteria	2975	Open in IMG/M
3300018017\|Ga0187872_10011336	All Organisms → cellular organisms → Bacteria	5544	Open in IMG/M
3300018040\|Ga0187862_10275791	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300018040\|Ga0187862_10530190	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300018042\|Ga0187871_10163784	Not Available	1253	Open in IMG/M
3300018047\|Ga0187859_10508808	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300020579\|Ga0210407_11088398	Not Available	606	Open in IMG/M
3300020580\|Ga0210403_10216313	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300020580\|Ga0210403_10834369	Not Available	731	Open in IMG/M
3300020580\|Ga0210403_11071829	Not Available	627	Open in IMG/M
3300020580\|Ga0210403_11333855	Not Available	546	Open in IMG/M
3300020581\|Ga0210399_10407167	Not Available	1134	Open in IMG/M
3300020581\|Ga0210399_11017818	Not Available	666	Open in IMG/M
3300020582\|Ga0210395_10053462	All Organisms → cellular organisms → Bacteria → Acidobacteria	2959	Open in IMG/M
3300020582\|Ga0210395_10737292	Not Available	736	Open in IMG/M
3300021088\|Ga0210404_10218036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1028	Open in IMG/M
3300021168\|Ga0210406_10085838	All Organisms → cellular organisms → Bacteria	2687	Open in IMG/M
3300021171\|Ga0210405_10405627	Not Available	1073	Open in IMG/M
3300021178\|Ga0210408_11361799	Not Available	536	Open in IMG/M
3300021181\|Ga0210388_10020717	All Organisms → cellular organisms → Bacteria	5322	Open in IMG/M
3300021407\|Ga0210383_10919878	Not Available	745	Open in IMG/M
3300021433\|Ga0210391_10768072	Not Available	754	Open in IMG/M
3300021474\|Ga0210390_10797501	Not Available	782	Open in IMG/M
3300021477\|Ga0210398_10000887	All Organisms → cellular organisms → Bacteria → Acidobacteria	32534	Open in IMG/M
3300021478\|Ga0210402_10237757	Not Available	1680	Open in IMG/M
3300023255\|Ga0224547_1039250	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300024271\|Ga0224564_1031810	Not Available	993	Open in IMG/M
3300025414\|Ga0208935_1037116	Not Available	648	Open in IMG/M
3300025612\|Ga0208691_1081861	Not Available	728	Open in IMG/M
3300027559\|Ga0209222_1069648	Not Available	677	Open in IMG/M
3300027590\|Ga0209116_1062535	Not Available	809	Open in IMG/M
3300027692\|Ga0209530_1106497	Not Available	796	Open in IMG/M
3300027795\|Ga0209139_10025314	All Organisms → cellular organisms → Bacteria → Acidobacteria	2121	Open in IMG/M
3300027824\|Ga0209040_10277550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300027879\|Ga0209169_10310374	Not Available	829	Open in IMG/M
3300027884\|Ga0209275_10064209	All Organisms → cellular organisms → Bacteria → Acidobacteria	1802	Open in IMG/M
3300028759\|Ga0302224_10232660	Not Available	733	Open in IMG/M
3300028759\|Ga0302224_10460553	Not Available	519	Open in IMG/M
3300028801\|Ga0302226_10507947	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300028906\|Ga0308309_10522786	Not Available	1027	Open in IMG/M
3300028906\|Ga0308309_10755313	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300028906\|Ga0308309_10771387	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300030007\|Ga0311338_10689034	Not Available	1035	Open in IMG/M
3300030706\|Ga0310039_10000823	All Organisms → cellular organisms → Bacteria → Acidobacteria	24068	Open in IMG/M
3300030740\|Ga0265460_11014509	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300030760\|Ga0265762_1127997	Not Available	587	Open in IMG/M
3300030878\|Ga0265770_1037318	Not Available	838	Open in IMG/M
3300031057\|Ga0170834_110305273	Not Available	514	Open in IMG/M
3300031234\|Ga0302325_10432189	All Organisms → cellular organisms → Bacteria → Acidobacteria	2031	Open in IMG/M
3300031525\|Ga0302326_10081044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5935	Open in IMG/M
3300031525\|Ga0302326_10573087	All Organisms → cellular organisms → Bacteria → Acidobacteria	1687	Open in IMG/M
3300031671\|Ga0307372_10041175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4695	Open in IMG/M
3300031708\|Ga0310686_101091119	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300031754\|Ga0307475_11399492	Not Available	539	Open in IMG/M
3300031823\|Ga0307478_10234652	Not Available	1486	Open in IMG/M
3300033821\|Ga0334818_042161	Not Available	654	Open in IMG/M
3300033829\|Ga0334854_000038	All Organisms → cellular organisms → Bacteria	68681	Open in IMG/M
3300033887\|Ga0334790_018400	All Organisms → cellular organisms → Bacteria → Acidobacteria	3231	Open in IMG/M
3300034091\|Ga0326724_0241881	All Organisms → cellular organisms → Bacteria → Acidobacteria	1039	Open in IMG/M
3300034124\|Ga0370483_0083803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1038	Open in IMG/M
3300034163\|Ga0370515_0000060	All Organisms → cellular organisms → Bacteria	34327	Open in IMG/M
3300034163\|Ga0370515_0023822	All Organisms → cellular organisms → Bacteria → Acidobacteria	2796	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	1.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.72%
Aquatic	Environmental → Aquatic	21.55%
Plants	Host-Associated → Plants	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.38%
Freshwater	Environmental → Aquatic → Freshwater	20.69%
Peat	Environmental → Terrestrial → Peat	10.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Sediment	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.69%
Loam	Environmental → Terrestrial → Soil → Loam	19.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Clay	Environmental → Terrestrial → Soil → Clay	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.07%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.24%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.03%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	6.03%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.03%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	5.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.59%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.86%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300033821	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_all_c_01284870	2124908038	Soil	MPFCWQYASAASDLLSSYPVDLVLSNTHLSDETAFGLLVALAGLPVTAFLCLPVENCYFWLPAIYGGKECLGLPALWPSEFARA
Bog_all_C_06374060	2140918008	Soil	MPFCWQYASAASDLLSSYPVDLVLSNTHLSDETAFGLLVALAGLPVTAFLCLPVENCYFWLPAIYGGKECLGLPALWPSEFARALD
FA3_10704370	2170459023	Grass Soil	LRARCERPKELLNSARIDVVLSNTHLPDGTGFGLVAVLAGLQITAFICLPVEDSCFWLPAIDGGKACLGLPALRPLEFATALEEMARSFDATLQVN
JGIcombinedJ26739_1001210471	3300002245	Forest Soil	GVALRGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFAKALEEMARQWGSAAKG*
JGIcombinedJ26739_1014124252	3300002245	Forest Soil	VDLVLCETHLPDGSGFGLMGNLVGFRVTGFLCLPLEDSCFWLPAIDEGRQCLGLPALRPSEFARALEKMARILAAAPPVN*
JGI26347J50199_10118481	3300003350	Bog Forest Soil	LSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGEKCLGSPALRPAEFARALEEMARCLGAVTRG*
Ga0062387_1000968421	3300004091	Bog Forest Soil	MRVDVVLSDMRLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGEKCLGSPALRPAEFARALEEMARCLGAVTRG*
Ga0062387_1001406323	3300004091	Bog Forest Soil	SMRVDVVLSDMRLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGEKCLGSPALRPAEFARALEETARCLGAAARG*
Ga0062387_1004676682	3300004091	Bog Forest Soil	MRAASDLLSSHPVDLVLSSTHLSDGTGFGLLMVLAGMPVTAFLCLPTENSCFWLPAMDSGKECLGLPALRPSEFASALEEMARRLAVTR
Ga0062389_1004791233	3300004092	Bog Forest Soil	PVNLVLSYTYLSDGTGFGLLAGLVHLPLTAFLCLPVENSYLWLPAIDGGTKCLGLPSLRPSEFARTLEEMVQGLPA*
Ga0062389_1030813102	3300004092	Bog Forest Soil	FRCHFAGNMRAARETLRVVRVDVVLSDMRLSDGTGLALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFARALEEMARCLGAVTRG*
Ga0062388_1022097982	3300004635	Bog Forest Soil	SMRVDVVLSDMRLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFARALEEMARCLGAVTRG*
Ga0070733_103253372	3300005541	Surface Soil	VIARPINLVLSNTHLPDGTGFDLLMALAGLPVSAFLCLPVENSCFWLPAIDAGKECLGMPALRPSEFASTLEKMARHLGPIPQANW*
Ga0070762_102270813	3300005602	Soil	RVDLLLSNVYLPDGTGFGLLKASAHIAVTAFLCLPVENSCLWLPAVDGGKQCLGLPALRPFEFARELEQMALRVSA*
Ga0070762_112453591	3300005602	Soil	ETVRTAQELVNKTRVDLVLSSVFLPDGTGYTLLASLSGLPVTAFLCLPVEESCYWLPAIDDGIDCLGLPALRPSEFVDRLEEMARSLSAEPQVN*
Ga0070763_104845341	3300005610	Soil	FAGNMRTARELLNSMRVDVVLSDMHLSDGTGVALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFAKALEEMARHLGSAAKG*
Ga0070763_109799982	3300005610	Soil	GNMRATREMLRAVRVDVVLSDMHLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFAHALEEMARALGAAARG*
Ga0070764_100026501	3300005712	Soil	RTARELLNSMRVDVVLSDMHLSDGTGVALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFAKALEEMARHLGSAAKG*
Ga0070766_103762751	3300005921	Soil	QAASEFLAVHPVDLLLSNTHLLDGTGYRLLMNLARLPVSAFLCFPVENSCLWLPAIDGGKRCLGLPALRPSEFARALEEVALRLSA*
Ga0070766_104332753	3300005921	Soil	GNMRATREMLRAVRVDVVLSDMHLPDGTGIALLGLLAGLAVTAFLCLPVETSCFWLPALDAGKKCLGSPALRPAEFAHALEEMARTLGAAARG*
Ga0075029_1002800371	3300006052	Watersheds	NLVLCNVHLPDGSGYGLATGLSGLPVTMFLCMPVEESCYWLPAIDAGKECLGLPALRPSEFASALAELARSLPVEEQFTQ*
Ga0070765_1006490253	3300006176	Soil	RVDVVLSDMRLSDGTGFALLGILAGLAVTAFLCLPVETSCFWLPAIDAGRKCLGSPALRPAEFAHALEEMARCLGAAGRG*
Ga0070765_1007183761	3300006176	Soil	RWGFRCHFAGNMRAARETLREVRVDVVLSDMRLPDGTGIALLGILAGFAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFARALEEMARCLGAAARG*
Ga0070765_1010446361	3300006176	Soil	VHLVLSNTILPDGTGFALLEALAGLPITAFLCLPVENSCLWLPAIDEGKHCLGMPALRPAEFSSALAEMAQRLADAALIN*
Ga0105240_104129821	3300009093	Corn Rhizosphere	MRAASDLLSSQPVDLVLTNTRLSDGTGFALLVALEGLPVTAFLCLPVESSCFWLPAIDSGKACLGLPALRPSEFASTLEEMTRTLAAAQWVN*
Ga0105240_115344232	3300009093	Corn Rhizosphere	CQQSTSAFGLLSSHPVDLVLNNAHLSDGAGFSLLMALVGLPVSAFLCGLVENSCFWLPAIDSGKACLGLPALRPPEFASALEE*
Ga0116108_11637572	3300009519	Peatland	MRAASDLLRSRPVDLVLSNTHLSDGTGFGLLGTLAGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPALRPSEFASALEEMAQCLAAAPPVN*
Ga0116126_11270851	3300009640	Peatland	HPVNLVLSNTRLPDGTAFSLLQVLSGRPVTAFLCVPVEDPCLWLPAIDEGKECLGLPALRPSEFASVLEEMSRHLATPEVIN*
Ga0116215_10276352	3300009672	Peatlands Soil	MRAACDLLGSRPVDLVLSNTHLSDGTGFGLLAALDGLPVTAFLCLPVEDGCFWLPAIDGGKDCLGLPALRPSEFARVLDEMARCLAAGPVVN*
Ga0116130_10434581	3300009762	Peatland	DLQAASDWLGSHPVDLVLSNTHLSDGTGFRLLMTLDGLPVTAFLCLPVENSCLWLPAINAGKACLGLPALRSSEFVSTLEEMARSLAEAPKVN*
Ga0136449_1017003873	3300010379	Peatlands Soil	FDLLVALAHLPVTAFLCVPVENSCLWVPAIDGGKKCLGLPSLRPSEFGRTLEEMALRLPA
Ga0150983_133962842	3300011120	Forest Soil	MRAASDLLRSQPVDLVLTDTYLPDGTGFDLLAALAHLPVTAFLFVPVENGCLWVPAIDGGKKCLGLPSLRPLEFGKILEEMVLCLPA*
Ga0150983_137749931	3300011120	Forest Soil	MATDLLGSHTVDLVLSNTQLPDGTGLGLLRTLARLPVSAFLCFPVENGCLWLPAIDGGKACLGLPALRPLEFARTLDEMSRRLPS*
Ga0150983_155832572	3300011120	Forest Soil	VKVDLVLSKISLPDGTGFTLLADLCGLPVTAFLCLPVEDSCFWIPAIDGGNACLGKPAFRPLEFLNALEEMSWGLPIHNHPQIH*
Ga0137390_104590401	3300012363	Vadose Zone Soil	MRGASELVSSQPVDLVLSNTYLADGTGLGLLRALASLPVTAFLCLPVENGCLWLPAIDGGEACLGLPALRPSEFGRTLEEMTRCITAAPQINKPVRKARVA*
Ga0181518_105409432	3300014156	Bog	SNLLIAHPVNLVLSNTRLPDGTAFSLLQVLSGRPVTAFLCVPVEDPCLWLPAIDEGKECLGLPALRPSEFASVLEEMSRHLATPEVIN*
Ga0181521_103089401	3300014158	Bog	ANARVATEYVAAQPVDLVLSNTHLPDGTGYGLLMSLARFPVSAFLCFPVENSCLWLPALDDGKRCLGLPALRPSEFAKALERMAMRLPA*
Ga0182018_100012348	3300014489	Palsa	MRAASDLLRSRPVDLVLSNTHLSDGTGFGLVGTLTGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPALRPREFASTLEKMARNLAAEPLVN*
Ga0182018_100384451	3300014489	Palsa	LNSDPVDLVLSEAHLSDGSGFGLLVALAGLPITAFVCLPVENSCFWLPAIDDGKECLGLPALRPSEFASALEEMVQCLSGV
Ga0182018_100604252	3300014489	Palsa	IHLVLSNTMLPDGTGFGLVEALAGRPVTAFLCLPVENSCLWLPAIDDGKECLGMPALRPSEFAIALEEMSRRLADPVAVN*
Ga0182018_103172552	3300014489	Palsa	LNSDPVDLVLSEAHLSDGSGFGLLVALAGLPITAFVCLPVENSCFWLPAIDDGKECLGLPALRPSEFASVLEEMVQCLSGAHSIN*
Ga0182015_100015738	3300014495	Palsa	MRAASDLLRSRPVDLVLSNTHLSDGTGFGLVGTLTGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPVLRPREFASTLEKMARNLAAEPLVN*
Ga0182015_101903472	3300014495	Palsa	MLLTHPIHLVLSNTLLPDGTGFGLLEALAGKQVTAFLCLPVENSCLWLPAMDDGKDCLGMPALRPSEFANALEEMARRLSSAVVVN*
Ga0182015_104562681	3300014495	Palsa	RPFNLVLSNTHLPDGTVFGMLVVLADLPVTAFLCLPVENSCFWLPAIDDGKECPGLPALRPSEFAKTLEDMTRCLDSAPRAGKPVPNAGVA*
Ga0182024_1001323614	3300014501	Permafrost	LNSDPVDLVLSEAHLSDGSGFGLLVALAGLPITAFVCLPVENSCFWLPAIDDGKECLGLPALRPSEFASALEEMVQCLAGVPSIN*
Ga0182024_100478405	3300014501	Permafrost	MLSTHRVHLVLSNTMLPDGTGFGLLEALAGRPVTAFLCLPVENSCLWLPAIDDGKDCLGTPALRPSEFAIALEEMARRLDIAVIVN*
Ga0182024_100533942	3300014501	Permafrost	MRAASDLLSSHPIALVFSSANLSDGTGFGLLMALAGLPITPPLCLPVENSCYWLPAIDAGKACLGLTTLRPSEFANVLEEMTRYLTAAQGVIAGSLRTRNKRFVPQKERKP*
Ga0182024_100599262	3300014501	Permafrost	VRSASDLIRSSPADLVLSETHLPDGTGFGLVGTLVGFRVTACLCLPLEDSCFWLPAIDAGKQFLGLPALKSSEFASTLEKMARSLSAAPPVN*
Ga0182024_109213031	3300014501	Permafrost	MRAAHNLLSSRPVDLVLCNTHLSDGTGFGLLAALAGLPITAFLYLPVETTCFGLPAIDGGKECLGLPTLRPSEFASALEEMTRRFGALPWVNKQVSDPGAA*
Ga0182024_116443401	3300014501	Permafrost	MGITVPFASSLRAASDLLSSRTVHLELSSTHLSDGTGFGLLGVLADLPVTAFLCLPVENTCFWLPAIDGGKGCLGLPALRPSEFASTLEEMARCLATALPVN*
Ga0181536_102105531	3300014638	Bog	MPLADRLQRWGFQCHFTNNMRAGSDLLSSRPVDLVLRNTRLPDGSGFGLLAALVGMPVTVYLCLQVENSCFWLPAIDDGKDCLGLPALRPSEFARELEKMNR*
Ga0182027_110439592	3300014839	Fen	MRAASDLLSSHPVDLVLSNTHLSDGTGFGLLAALAGLPVTAFLCLPVEDSCFWLPAIDGGKDCLGLPALRPSEFASALEEMAQSLAAAPSVD*
Ga0167658_10627911	3300015195	Glacier Forefield Soil	MRSAFDLLISHPVNLVLSDTHLTDGTGFGLLGALAGLPVTAFLCWPVESGCYWLPAIDGGRTCFGLPALRSSEFANALREMVRRLSRPTVAQSGGPIGRCA*
Ga0187853_105028142	3300017940	Peatland	WGFRCHVAGNMRAALDLLNSHPVDLVLSKTQLSDGTGFGLLVALAGLPVTAFLCLPVEDSCFWLPAIDDGKDCLGLPALRPSEFARVLDEMSRCFATGQAVN
Ga0187876_10221683	3300018003	Peatland	VDLVLSDAYLPDGTGFDLLVALAHLPVTAFLCVPVENSCLWVPAIDGGKKCLGLASLRPSEFVRTLEEMALRLPV
Ga0187872_100113369	3300018017	Peatland	WGFRCHLARNMRAASDLLRSRPVDLVLSNTHLSDGTGFGLLGTLAGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPALRPSEFASALEEMAQCLAAAPPVN
Ga0187862_102757911	3300018040	Peatland	NLLIAHPVNLVLSNTRLPDGTAFSLLQVLSGRPVTAFLCVPVEDTCLWLPAIDEGEECLGLPALRPAEFASVLEEMSRHLASPEVIN
Ga0187862_105301902	3300018040	Peatland	FRCYFADNMRAASDLLSSQPVDLVLTNTRLSDGTGFGLLVALDGLPVTAFLCLPVESSCFWLPAIDSGKACLGLPALRPSEFASALEEMTRSLAAAQWIN
Ga0187871_101637842	3300018042	Peatland	NMRAASDLLSSRPVDLVLCNTRLPDRSGFGLLPALAGMPVAALLCLPVEESCFWLPAIDNGKDWLGLPALLPSEFARELEKMNRSLGLAPPFTKSGTESKVA
Ga0187859_105088082	3300018047	Peatland	VLSNTHLSDGTGFGLLVALDGLPVTAFLCLPVENSCFWLPAIDGGKDCLGLPALRPTEFAGVLDEMARCLATGSAERKEGTHDAAFLN
Ga0210407_110883982	3300020579	Soil	HLSDRMGVALLGILAGLAVTAFLCLPVETGCFWLPAIDAGKMCLGLPALRPAEFAKALEEMARHWGTAARG
Ga0210403_102163133	3300020580	Soil	MRVDVVLSDMHLADGMGVALLGILAGLAVTAFLCLPVETGCLWLPAIDARKMCLGLPALRPTEFAKALEEMARHLGTAARG
Ga0210403_108343692	3300020580	Soil	ASDLLGSHRVDLLLSNVHLPDGTGFGLLKASAHIAVTAFLCLPVENSCLWLPAVDGGKQCLGLPALRPFEFARELEQMALCVSA
Ga0210403_110718292	3300020580	Soil	VLSNVHLPDGTGYTLLASLSGLPVTAFLCLPVEESCFWLPAIDDGIDCLGLPALRPSEFVDQLEEMARSIPGERQAN
Ga0210403_113338551	3300020580	Soil	VDVVLSDIHLSDGTGIGMLGILAGLAVTAFLCFPLETSCFWLPAVDAGKKCLGLPALRPAEFAKALEEMARSLGTATRV
Ga0210399_104071672	3300020581	Soil	MRVDVVLSDMHLSDRMGVALLGILAGLAVTAFLCLPVETGCFWLPAIDAGKMCLGLPALRPAEFAKALEEMARHWGTAARG
Ga0210399_110178182	3300020581	Soil	CHFASDMRAASDLLRSQPVDLVLTDTYLPDGTGFDLLAALAHLPVTAFLFVPVENGCLWVPAIDGGKKCLGLPSLRPLEFGKILEEMVLCLPA
Ga0210395_100534622	3300020582	Soil	MGIPVPFCRKHAAVRVDVVLSDMHLPDGTGIALLGLLAGLAVTAFLCLPVETSCFWLPALDAGKKCLGSPALRPAEFAHALEEMARTLGAAARG
Ga0210395_107372922	3300020582	Soil	RRWGFRCYFAGNLRAARQLLNSMRVDVVLSDMHLSDGTGVALLGILAGLAVTAFLCLPVETSCLWLPAIDAGKKCLGLPALRPAEFAKALEEMARQWGSAAKG
Ga0210404_102180362	3300021088	Soil	SDLLRSLPVDLVLSDTYLPDGTGFDLLVASAHLPVTAFLCVPVENSCLWVPAIDGGKKCLGLPSLRPAEFGRTLEEMALRLPA
Ga0210406_100858382	3300021168	Soil	MRVDVVLSDMHLSDGMGVALLGILAGLAVTAFLCLPVETGCFWLPAIDAGKMCLGLPALRPAEFAKALEEMARHLGTAARG
Ga0210405_104056271	3300021171	Soil	VVLSDMRLPDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFARALEEMARCLGAAARG
Ga0210408_113617991	3300021178	Soil	TDTYLPDGTGFDLLAAFAHLPVTAFLFVPVENGCLWVPAIDGGKKCLGLPSLRPLEFGKILEEMVLCLPA
Ga0210388_100207176	3300021181	Soil	MRVDVVLSDMHLSDRMGVALLGILAGLAVTAFLCLPVETGCFWLPAIDAGKMCLGLPALRPAEFAKALEEMARHLGTAARG
Ga0210383_109198782	3300021407	Soil	RAVRVDVVLSDMHLPDGTGIALLGLLAGLAVTAFLCLPVETSCFWLPALDAGKKCLGSPALRPAEFAHALEEMARALGAAARG
Ga0210391_107680721	3300021433	Soil	WRLLSFTQIDVVLSDIHLSDGNGVDMLGILAGLPITAFLCLPVEASCFWLPAVEAGKKCLGLPALRPSELANTLEGTSHRPALLHA
Ga0210390_107975011	3300021474	Soil	LRTARELLRSMRVDVVLSDMRLSDGMGVALLGILAGLAVTAFLCLPVETGCFWLPAIDAGKMCLGLPALRPAEFAKALEEMARHLGTAARG
Ga0210398_1000088729	3300021477	Soil	MRVDVVLSDMHLSDGMGVALLGILAGLAVTAFLCLPVETGCLWLPAIDARKMCLGLPALRPTEFAKALEEMARHLGTAARG
Ga0210402_102377573	3300021478	Soil	VLSNTYLVDGTGLGLFRALARLPVTAFLCLPVENSCLWLPAIDGGEACLGLPALRPLEFGRTLEEMTRCLPAAPRIHKAVFKARVA
Ga0224547_10392502	3300023255	Soil	ASDLLSSHPIALVFSSANLSDGTGFGLLMALAGLPITPPLCLPVENSCYWLPAIDAGKACLGLTTLRPSEFANVLEEMTRYLTAAQGVIAGSLRTRNKRFVPQKERKP
Ga0224564_10318101	3300024271	Soil	LSDMRLPDGTGLALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFAHALEEMARCLGAAGRG
Ga0208935_10371161	3300025414	Peatland	SHPVDLVLSNMHLSDETGFRLLMTLDGLPVTAFLCLPVENSCLWLPAINAGKACLGLPALRSSEFVSTLEEMARSLAEAPKVN
Ga0208691_10818611	3300025612	Peatland	TQFALALTSTNLSDGTGLCILTGLAGLPVTAFLCLPVENSCYWLPAIDDGKACLGLPALRPSEFANVLEEMTRCLAVAP
Ga0209222_10696481	3300027559	Forest Soil	ELLSSIRVDVVLSDMHLSDGTGVGLLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFSKALEEMARHLGSAAKG
Ga0209116_10625351	3300027590	Forest Soil	SVQVDLVLSDAHLPDATGPELLEILSGLPVTAYLCVPVENSCFWLPAIDAGKECLGSPALRPSEFANELEETAWSLAFAPSSRTR
Ga0209530_11064972	3300027692	Forest Soil	SIRVDVVLSDMHLSDGTGVGLLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGLPALRPAEFAKVLEEMARHLGSAAKG
Ga0209139_100253141	3300027795	Bog Forest Soil	VDVVLSDMRLSDGNGIALLGILTGLAVTAFLCFPVETSCFWLPAIDAGKKCLGLPALRPAEFARALEEMARCVGAAARG
Ga0209040_102775501	3300027824	Bog Forest Soil	DGTGFDLLAALADLPVTAFLCVPVENSCLWVPAIDGGQKCLGLPSLRPTEFGRTLEEMALRLSA
Ga0209169_103103742	3300027879	Soil	DVVLSDMHLPDGTGIALLGLLAGLAVTAFLCLPVETSCFWLPALDAGKKCLGSPALRPAEFAHALEEMARTLGAAARG
Ga0209275_100642094	3300027884	Soil	SDMHLSDGTGVALLGILAGLAVTAFLCLPVETSCLWLPAIDAGKKCLGLPALRPAEFAKALEEMARQ
Ga0302224_102326602	3300028759	Palsa	GDMRAASDLLRSRPVDLVLSNTHLSDGTGFGLVGTLTGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPALRPREFASTLEKMARNLAAEPLVN
Ga0302224_104605531	3300028759	Palsa	VHLVLSNTLLPDGTGFGLLDVLAGKQITAFLCLPVENSCLWLPAMDDGKDCLGAPALRPSEFASALEEMARRLSAAVVVN
Ga0302226_105079472	3300028801	Palsa	QFALALTSTNLSDGTGLCILTGLAGLPVTAFLCLPVENSCYWLPAIDDGKACLGLPALRPSEFANVLEEMTRCLAVAP
Ga0308309_105227861	3300028906	Soil	CHFARNTRTAREMLRATRVDVVLSDMRLSDGTGFALLGILAGLAVTAFLCLPVETSCFWLPAIDAGRKCLGSPALRPAEFAHALEEMARCLGAAGRG
Ga0308309_107553132	3300028906	Soil	VHLVLSNTILPDGTGFALLEALAGLPITAFLCLPVENSCLWLPAIDEGKHCLGMPALRPAEFSSALAEMAQRLADAALIN
Ga0308309_107713872	3300028906	Soil	PVDLVLSDTYLPDGTGFDLLVALAHLPVTAFLCVPVENSCLWVPAIDGGKKCLGLPSLRPAEFGRTLEEMALRLPA
Ga0311338_106890343	3300030007	Palsa	CRFAKNARAASDLLNSDPVDLVLSEAHLSDGSGFGLLVALAGLPITAFVCLPVENSCFWLPAIDDGKECLGLPALRPSEFARVLEKMVQCLSGAHSIN
Ga0310039_1000082319	3300030706	Peatlands Soil	LSNTHLSDGTGFGLLAALDGLPVTAFLCLPVEDGCFWLPAIDGGKDCLGLPALRPSEFARVLDEMARCLAAGPVVN
Ga0265460_110145091	3300030740	Soil	LLRSAPVDVVLSDMHLSDGSGFRLLALLTGLPVSAFLCLPVENSCFWLPAIDAGRECLGSPALRPSEFASALEEMSRCLEAAPAPNTDAA
Ga0265762_11279971	3300030760	Soil	HLSDGTGIGMLGILAGLAVTAFLCFPLETSCFWLPAVDAGKKCLGLPALRPAEFAKALEEMARSLGTATRV
Ga0265770_10373181	3300030878	Soil	GFRCHFARNTRTAREMLRATRVDVVLSDMRLSDGTGFALLGILAGLAVTAFLCLPVETSCFWLPAIDAGRKCLGSPALRPAEFAHALEEMARCLGAAGRG
Ga0170834_1103052732	3300031057	Forest Soil	DRTGIALLGILAGLAVTVFLCLPVETRYFWLPAIDAGEKCLGSLALRPAEFAHALEEMSRCLGAAARG
Ga0302325_104321891	3300031234	Palsa	SILLVLSNTHPPDGTVFGLLVALADLPVTVFLRLPVENSCFWLPAIDDGKECLGLPALRPSEFARTLEAMTRSLVAEPRFNKSMIVVA
Ga0302326_100810442	3300031525	Palsa	VLSNTHPPDGTVFGLLVALADLPVTVFLRLPVENSCFWLPAIDDGKECLGLPALRPSEFARTLEAMTRSLVAEPRFNKSMIVVA
Ga0302326_105730871	3300031525	Palsa	DLVLTNACLSDGPGFSLLVALDGLPVTAFLCLPVESSCFWLPAIDSGRACLGLLALRPSEFASALEEMTRSLAAAQLIN
Ga0307372_100411751	3300031671	Soil	LVLSNTNLADGTGYRLLTNLVRPPVSAFLCLPVENGCLWLPAIDGGKCCLGLPALRPLEFAMELREMSLRLPTYIQAS
Ga0310686_1010911192	3300031708	Soil	ANNIRTARQLLSSTRVDVVLSNTHLPDGTGFGLIAALAGLPVAAFLCLPTEHSCFWLPAIDHGQDCWGSPALRPAQFASTLEEMAKCLAAAPKVDQPVLNAGVA
Ga0307475_113994921	3300031754	Hardwood Forest Soil	HASDIRAAFDLMIARPVNLVLSNTHLPDGTGFDLLMALAGLPVSGFLCLPVENSCFWLPAIDAGKQCLGRPALRPSEFASTLEKMARHLDPVPRTN
Ga0307478_102346521	3300031823	Hardwood Forest Soil	MLRAVRVDAVLSDMRLPDGTGIALVGILAGLAVTAFLCLPVETSCFWLPALDAGKKCLGLPALRPAEFAKALEEMARCLGAAARG
Ga0334818_042161_339_617	3300033821	Soil	MRAASDLLSSHPVDLVLSNTHLSDGTGFGLLAALAGLPVTAFLCLPVEDSCFWLPAIDGGKDCLGLPALRPSEFASALEEMAQSLAAAPSVD
Ga0334854_000038_43809_44087	3300033829	Soil	MRAASDLLRSRPVDLVLSNTHLSDGTGFGLVGTLTGLPVTAFLCLPVENGCFWLPAIDAGKECLGLPALRPREFASTLEKMARNLAAEPLVN
Ga0334790_018400_915_1250	3300033887	Soil	MRAASDLLSSHPIALVFSSANLSDGTGFGLLMALAGLPITPPLCLPVENSCYWLPAIDAGKACLGLTTLRPSEFANVLEEMTRYLTAAQGVIAGSLRTRNKRFVPQKERKP
Ga0326724_0241881_144_422	3300034091	Peat Soil	MRAASDLLSSHSVDLVLSNTHLSDGTGFCLLAALAGLPVTAFRCLPIEDSCFWLPAIDGGKDCLGLPALRPSEFASALEEMAQSLAAASPVN
Ga0370483_0083803_150_428	3300034124	Untreated Peat Soil	MRAAANLLSAHPIHLVLSNTMLPDGTGFGLVEALAGRPVTAFLCLPVENSCLWLPAIDDGKECLGMPALRPSEFAIALEEMSRRLADPVAVN
Ga0370515_0000060_25821_26096	3300034163	Untreated Peat Soil	MRATREMLRAVRVDVVLSDMHLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFAHALEEMARALGAAARG
Ga0370515_0023822_563_838	3300034163	Untreated Peat Soil	MRAARETLRAVRVDVVLSDMNLSDGTGIALLGILAGLAVTAFLCLPVETSCFWLPAIDAGKKCLGSPALRPAEFARALEEMARCLGAAARG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences