Metagenome / Metatranscriptome Family F078960

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078960
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Number of Associated Samples	69
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.45 %
% of genes near scaffold ends (potentially truncated)	17.24 %
% of genes from short scaffolds (< 2000 bps)	76.72 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (58.621 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.690 % of family members)
Environment Ontology (ENVO)	Unclassified (43.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.345 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.53% β-sheet: 0.00% Coil/Unstructured: 57.47%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF07730	HisKA_3	6.90
PF00521	DNA_topoisoIV	6.90
PF11645	PDDEXK_5	5.17
PF00171	Aldedh	5.17
PF02737	3HCDH_N	2.59
PF00196	GerE	1.72
PF00691	OmpA	1.72
PF00882	Zn_dep_PLPC	0.86
PF13442	Cytochrome_CBB3	0.86
PF13560	HTH_31	0.86
PF00067	p450	0.86
PF00725	3HCDH	0.86
PF12779	WXXGXW	0.86
PF08327	AHSA1	0.86
PF02371	Transposase_20	0.86
PF03544	TonB_C	0.86
PF13620	CarboxypepD_reg	0.86
PF04542	Sigma70_r2	0.86
PF00383	dCMP_cyt_deam_1	0.86
PF06742	DUF1214	0.86
PF02663	FmdE	0.86
PF08281	Sigma70_r4_2	0.86
PF00989	PAS	0.86
PF00072	Response_reg	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	6.90
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	6.90
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	6.90
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	6.90
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	6.90
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	5.17
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	5.17
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	5.17
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.45
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	2.59
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	2.59
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.59
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.59
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	2.59
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.59
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.86
COG2124	Cytochrome P450	Defense mechanisms [V]	0.86
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	0.86
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.86
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.86
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.86
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
All Organisms	root	All Organisms	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
cellular organisms	root	All Organisms → cellular organisms	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.86 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.86 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10377426	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300001661\|JGI12053J15887_10441392	Not Available	623	Open in IMG/M
3300002245\|JGIcombinedJ26739_101241687	Not Available	635	Open in IMG/M
3300003505\|JGIcombinedJ51221_10007239	All Organisms → cellular organisms → Bacteria → Acidobacteria	3462	Open in IMG/M
3300003505\|JGIcombinedJ51221_10009113	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3177	Open in IMG/M
3300004103\|Ga0058903_1493500	Not Available	627	Open in IMG/M
3300004631\|Ga0058899_12061193	Not Available	657	Open in IMG/M
3300005533\|Ga0070734_10843003	Not Available	520	Open in IMG/M
3300005534\|Ga0070735_10124085	Not Available	1612	Open in IMG/M
3300005534\|Ga0070735_10198228	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300005538\|Ga0070731_10090961	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300005541\|Ga0070733_10540213	Not Available	780	Open in IMG/M
3300005541\|Ga0070733_10877429	Not Available	602	Open in IMG/M
3300005542\|Ga0070732_10123368	Not Available	1535	Open in IMG/M
3300005542\|Ga0070732_10977153	Not Available	518	Open in IMG/M
3300005602\|Ga0070762_10002293	All Organisms → cellular organisms → Bacteria	8996	Open in IMG/M
3300005602\|Ga0070762_10008753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5020	Open in IMG/M
3300005610\|Ga0070763_10482046	Not Available	707	Open in IMG/M
3300005921\|Ga0070766_11024831	Not Available	568	Open in IMG/M
3300006176\|Ga0070765_100774514	Not Available	907	Open in IMG/M
3300006176\|Ga0070765_101113946	Not Available	746	Open in IMG/M
3300006176\|Ga0070765_102112729	Not Available	526	Open in IMG/M
3300011120\|Ga0150983_10128682	Not Available	835	Open in IMG/M
3300011120\|Ga0150983_10183727	Not Available	878	Open in IMG/M
3300011120\|Ga0150983_11122756	Not Available	529	Open in IMG/M
3300011120\|Ga0150983_12987219	Not Available	899	Open in IMG/M
3300020579\|Ga0210407_10636502	Not Available	830	Open in IMG/M
3300020580\|Ga0210403_10649043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300020580\|Ga0210403_10708545	Not Available	806	Open in IMG/M
3300020580\|Ga0210403_11465505	Not Available	515	Open in IMG/M
3300020581\|Ga0210399_11090576	Not Available	639	Open in IMG/M
3300020582\|Ga0210395_10151140	Not Available	1733	Open in IMG/M
3300020582\|Ga0210395_10161457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1675	Open in IMG/M
3300020582\|Ga0210395_10516778	Not Available	898	Open in IMG/M
3300020582\|Ga0210395_10543148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300020583\|Ga0210401_10022128	All Organisms → cellular organisms → Bacteria	6089	Open in IMG/M
3300020583\|Ga0210401_10283131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1518	Open in IMG/M
3300021168\|Ga0210406_10008727	All Organisms → cellular organisms → Bacteria → Acidobacteria	10130	Open in IMG/M
3300021168\|Ga0210406_10096453	All Organisms → cellular organisms → Bacteria	2515	Open in IMG/M
3300021168\|Ga0210406_10390504	Not Available	1117	Open in IMG/M
3300021170\|Ga0210400_10013269	All Organisms → cellular organisms → Bacteria	6564	Open in IMG/M
3300021170\|Ga0210400_10022459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4914	Open in IMG/M
3300021170\|Ga0210400_10147409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1895	Open in IMG/M
3300021171\|Ga0210405_10013082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6915	Open in IMG/M
3300021171\|Ga0210405_10164923	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300021171\|Ga0210405_10209045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1547	Open in IMG/M
3300021171\|Ga0210405_10218934	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300021171\|Ga0210405_10251981	Not Available	1397	Open in IMG/M
3300021171\|Ga0210405_10533326	Not Available	918	Open in IMG/M
3300021178\|Ga0210408_10394044	Not Available	1103	Open in IMG/M
3300021180\|Ga0210396_10007702	All Organisms → cellular organisms → Bacteria	10241	Open in IMG/M
3300021180\|Ga0210396_10028018	All Organisms → cellular organisms → Bacteria	5210	Open in IMG/M
3300021180\|Ga0210396_10066667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	3280	Open in IMG/M
3300021181\|Ga0210388_10084589	All Organisms → cellular organisms → Bacteria → Acidobacteria	2697	Open in IMG/M
3300021401\|Ga0210393_10132045	All Organisms → cellular organisms → Bacteria → Acidobacteria	2001	Open in IMG/M
3300021405\|Ga0210387_11406599	Not Available	600	Open in IMG/M
3300021406\|Ga0210386_10933225	Not Available	742	Open in IMG/M
3300021407\|Ga0210383_10458925	All Organisms → cellular organisms → Bacteria → Acidobacteria	1100	Open in IMG/M
3300021420\|Ga0210394_10064435	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300021420\|Ga0210394_10225523	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300021432\|Ga0210384_10087243	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300021474\|Ga0210390_10181085	Not Available	1780	Open in IMG/M
3300021477\|Ga0210398_10226685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1523	Open in IMG/M
3300021479\|Ga0210410_10000744	All Organisms → cellular organisms → Bacteria	33531	Open in IMG/M
3300021559\|Ga0210409_10164499	All Organisms → cellular organisms → Bacteria	2029	Open in IMG/M
3300022528\|Ga0242669_1008546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266	Open in IMG/M
3300022528\|Ga0242669_1056413	Not Available	683	Open in IMG/M
3300022529\|Ga0242668_1132467	Not Available	535	Open in IMG/M
3300022529\|Ga0242668_1138148	Not Available	527	Open in IMG/M
3300022715\|Ga0242678_1088417	Not Available	502	Open in IMG/M
3300022716\|Ga0242673_1034843	Not Available	790	Open in IMG/M
3300022717\|Ga0242661_1046918	Not Available	796	Open in IMG/M
3300022726\|Ga0242654_10201403	Not Available	692	Open in IMG/M
3300022726\|Ga0242654_10399329	Not Available	527	Open in IMG/M
3300023030\|Ga0224561_1028295	Not Available	506	Open in IMG/M
3300024225\|Ga0224572_1046181	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300026557\|Ga0179587_10528546	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300027073\|Ga0208366_1017578	Not Available	778	Open in IMG/M
3300027684\|Ga0209626_1197954	Not Available	533	Open in IMG/M
3300027842\|Ga0209580_10378862	Not Available	705	Open in IMG/M
3300027855\|Ga0209693_10058870	Not Available	1891	Open in IMG/M
3300027867\|Ga0209167_10263058	Not Available	928	Open in IMG/M
3300027884\|Ga0209275_10007031	All Organisms → cellular organisms → Bacteria	4729	Open in IMG/M
3300027889\|Ga0209380_10060861	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300027908\|Ga0209006_10020946	All Organisms → cellular organisms → Bacteria	5926	Open in IMG/M
3300027986\|Ga0209168_10161134	Not Available	1134	Open in IMG/M
3300027986\|Ga0209168_10542897	Not Available	559	Open in IMG/M
3300028906\|Ga0308309_10883297	Not Available	776	Open in IMG/M
3300029636\|Ga0222749_10244228	Not Available	912	Open in IMG/M
3300029636\|Ga0222749_10436217	Not Available	699	Open in IMG/M
3300029636\|Ga0222749_10655882	Not Available	574	Open in IMG/M
3300030730\|Ga0307482_1036307	Not Available	1131	Open in IMG/M
3300030730\|Ga0307482_1274728	Not Available	535	Open in IMG/M
3300030879\|Ga0265765_1026015	Not Available	727	Open in IMG/M
3300030937\|Ga0138302_1230907	Not Available	574	Open in IMG/M
3300030991\|Ga0073994_10064049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300031057\|Ga0170834_107667723	Not Available	1029	Open in IMG/M
3300031708\|Ga0310686_100135201	All Organisms → cellular organisms → Bacteria → Acidobacteria	6025	Open in IMG/M
3300031708\|Ga0310686_102705997	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300031708\|Ga0310686_111659282	Not Available	501	Open in IMG/M
3300031708\|Ga0310686_115761521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2039	Open in IMG/M
3300031708\|Ga0310686_116828630	Not Available	1098	Open in IMG/M
3300031708\|Ga0310686_119029081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1696	Open in IMG/M
3300031715\|Ga0307476_10020548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4282	Open in IMG/M
3300031715\|Ga0307476_10359678	Not Available	1072	Open in IMG/M
3300031718\|Ga0307474_10641463	Not Available	838	Open in IMG/M
3300031754\|Ga0307475_10417673	Not Available	1078	Open in IMG/M
3300031823\|Ga0307478_10155901	Not Available	1815	Open in IMG/M
3300031823\|Ga0307478_10288338	Not Available	1342	Open in IMG/M
3300031823\|Ga0307478_10558529	All Organisms → cellular organisms → Bacteria → Acidobacteria	956	Open in IMG/M
3300031823\|Ga0307478_11667985	Not Available	526	Open in IMG/M
3300031962\|Ga0307479_10171946	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300031962\|Ga0307479_10817864	Not Available	907	Open in IMG/M
3300032515\|Ga0348332_11440896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300032515\|Ga0348332_12977089	Not Available	636	Open in IMG/M
3300032515\|Ga0348332_13944430	Not Available	836	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.14%
Plants	Host-Associated → Plants	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.55%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.07%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	10.34%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.34%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103774261	3300001593	Forest Soil	LAAQEKDPAKLMTLSGEITRLLESKEQRVKKVPGSMGEDPTKKAG*
JGI12053J15887_104413922	3300001661	Forest Soil	MIWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLESKQQYVRKAPSSVPENPGKAS*
JGIcombinedJ26739_1012416871	3300002245	Forest Soil	MIWDKKESWMELCELAAHEKDPAKLMVLIGEITRLLESKEQRVKKVPGSIGEDPT
JGIcombinedJ51221_100072392	3300003505	Forest Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETKQQRVTRAPAENPAKNPR*
JGIcombinedJ51221_100091132	3300003505	Forest Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLLEAKHQCVAAPGSVTENPAKTAS*
Ga0058903_14935001	3300004103	Forest Soil	MVWDRKESWVELCELAAQEKDPAKLMVLIGEIDRLLESKEQRVIKAPSSTSESLSERASSER*
Ga0058899_120611931	3300004631	Forest Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVIKAPSSTTENPIEKLS*
Ga0070734_108430031	3300005533	Surface Soil	VFQHLWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070735_101240852	3300005534	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKAPSSTTENPTK*
Ga0070735_101982281	3300005534	Surface Soil	KSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070731_100909611	3300005538	Surface Soil	MIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070733_105402131	3300005541	Surface Soil	PEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS*
Ga0070733_108774291	3300005541	Surface Soil	VFQHLWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPCSTGENPTTKAS*
Ga0070732_101233683	3300005542	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKALSSTTENPTK*
Ga0070732_109771532	3300005542	Surface Soil	MVWDKKESWMELCELAAQEKDPKKLIALIGEIDRLLEAKQKQVPKAPENPAKKAS*
Ga0070762_100022935	3300005602	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKARLT*
Ga0070762_100087534	3300005602	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPNSSTENSVEKLS*
Ga0070763_104820462	3300005610	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR*
Ga0070766_110248312	3300005921	Soil	MELCELASQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS*
Ga0070765_1007745141	3300006176	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPAENPAKNPR*
Ga0070765_1011139461	3300006176	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTRAPAENPAKNPR*
Ga0070765_1021127291	3300006176	Soil	MVWDKNESWMELCELAAQEKDPKKLIALIGKIDRLLESKEQRVAKAPNSVTENPAKKAS*
Ga0150983_101286821	3300011120	Forest Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMANAPGSVAENPDTKGS*
Ga0150983_101837272	3300011120	Forest Soil	MVWDRKESWVELCELAVQEKDPTKLMALIGEIDRLLESKAQRVIKAPSSTSENLSEKTS*
Ga0150983_111227562	3300011120	Forest Soil	MELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVIKTPSSTAETPSEQAS*
Ga0150983_129872192	3300011120	Forest Soil	MVWDRKESWVELCELAAQEKDPAKLMVLIGDIDRLLESKEQRVIKAPSSTSESLSERASSER*
Ga0210407_106365021	3300020579	Soil	MVWDNNNKDKESWTELCDLAAQEKDPTKLMALIGEIDRLLEAKQQRVTKAPDMVPENPADKAS
Ga0210403_106490432	3300020580	Soil	MAWDKKESWMELCELAAQEEDPTKLMALIGEIDRLLQSKEQRVSKAPSSTTENSIEKLS
Ga0210403_107085451	3300020580	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPPSSTTENPIEKLS
Ga0210403_114655051	3300020580	Soil	MVWDKDESWMELCELAAQEKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKK
Ga0210399_110905761	3300020581	Soil	MIWDRKESWIELYELAAQEKDPTKLLALIGEIDRLLESREQRVAKAPSSVAESPTKKAS
Ga0210395_101511402	3300020582	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETEQQRVTRAPAENPAKNPR
Ga0210395_101614572	3300020582	Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLLEAKHQCVAAPGSVTENPAKTAS
Ga0210395_105167782	3300020582	Soil	MVWDKKESWLELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0210395_105431481	3300020582	Soil	MAWDRKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0210401_100221282	3300020583	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETKQQRVTRAPAENPAKNPR
Ga0210401_102831312	3300020583	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPNSSTENSVEKLS
Ga0210406_100087276	3300021168	Soil	MIWEKRESWMELCELAAQEKDPKRLMALIAEIDRLLEAKHQQVPKAPDPVTENPAKKGS
Ga0210406_100964533	3300021168	Soil	MVWNNNESWIELCQLAAQEKDPTKLIALLGEIGRLLESGEHRVATTPISVGVKKAS
Ga0210406_103905042	3300021168	Soil	KKENWIELCELAVQEKDPAKLMALIREIDQLLESKAQPVGNAPGSAARKRTG
Ga0210400_100132694	3300021170	Soil	MIWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLESKQQYVRKAPSSVPENPGKAS
Ga0210400_100224594	3300021170	Soil	MVWDKRESWMELCELAAQEKDPTKLIALIAEIDRLLESKEQSVRKTPSSVPANPSTEAN
Ga0210400_101474092	3300021170	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQYMAKAPGSVAENPDTKGS
Ga0210405_100130826	3300021171	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTKAPDLVAENPAKNPR
Ga0210405_101649232	3300021171	Soil	MELCELASQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS
Ga0210405_102090454	3300021171	Soil	MVGDKKESWVELCELPAQEKGPTRLTELIAELDRLLEAKHQCVAKVPDSVTEHPAC
Ga0210405_102189342	3300021171	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLETNQQCVAKAPGSVAENPTTKGS
Ga0210405_102519811	3300021171	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAP
Ga0210405_105333261	3300021171	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0210408_103940442	3300021178	Soil	MVGDKKESWVELCELPAQEKDPTRLTELIAELDRLLEAKHQCVAKVPDSVTEHPAC
Ga0210396_100077023	3300021180	Soil	MVWDKKESWMELCELAAQEEDTTKLMALIGEIDRLLETKEQAVRKPANSVFENPAEKAG
Ga0210396_100280184	3300021180	Soil	MIWDKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210396_100666675	3300021180	Soil	MIWDKKESWMELCELAAQEEDSTKLMALIAELERLLESKEQAVRKPPISALEHPADKAS
Ga0210388_100845893	3300021181	Soil	MVWDKKESWMELCELAAQEKDSKKLMALIGEIDRTLGSKASVCGEGFRVGNRESC
Ga0210393_101320452	3300021401	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKARL
Ga0210387_114065991	3300021405	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMAKAPGSVAENSTAKGS
Ga0210386_109332252	3300021406	Soil	VFQHMWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210383_104589252	3300021407	Soil	MVWDKKESWMELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0210394_100644353	3300021420	Soil	MVWDKKESWMEPCELAAQEKDPRKLMALIREINRLLEAKHQCLAKASESATADPDKKGRL
Ga0210394_102255232	3300021420	Soil	MWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210384_100872435	3300021432	Soil	MVWDNEESWMELCELAAQEKDPAKLMTLIGEIERLLESKEQRVTKAQSSAGRESY
Ga0210390_101810851	3300021474	Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVIKAPSSTTENPIEKLS
Ga0210398_102266852	3300021477	Soil	MWYKSFLDPEEVMIWDKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210410_1000074428	3300021479	Soil	MIWDTKESWMELCEFATEEQDPAKLMALIAEIDRLLGAKQQRVPRAPDLLAENPAKNAR
Ga0210409_101644995	3300021559	Soil	IRHSPIPEEIFMAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0242669_10085461	3300022528	Soil	MELCELAAQEEDTTKLMALIGEIDRLLETKEQAVRKPANSVFENPAEKAG
Ga0242669_10564131	3300022528	Soil	AMVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETEQQRVTRAPAENPAKNPR
Ga0242668_11324671	3300022529	Soil	LSGTKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0242668_11381482	3300022529	Soil	MSWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0242678_10884171	3300022715	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIAQIDRLLETKQQRVTRAPVENPAQNTR
Ga0242673_10348432	3300022716	Soil	WMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKAKADIG
Ga0242661_10469182	3300022717	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPPSSTTEN
Ga0242654_102014032	3300022726	Soil	MVWDKKENWIELCELAVQEKDPAKLMALIREIDQLLESKAQPVGNAPGSAARKRTG
Ga0242654_103993291	3300022726	Soil	RRVVMIWEKRESWMELCELAAQEKDPKRLMALIAEIDRLLEAKHQQVPKAPDPVTENPAKKGS
Ga0224561_10282951	3300023030	Soil	MVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSS
Ga0224572_10461812	3300024225	Rhizosphere	MVWDNKESWMELCELAAQEKDPRKLMALLGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0179587_105285462	3300026557	Vadose Zone Soil	MVWDKRESWMELCELAAQEKDPRKLIALIGEIDRLLEAKHQCVAKVPESVTANPAKKAG
Ga0208366_10175781	3300027073	Forest Soil	MIWDKKESWMELCELAAQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS
Ga0209626_11979542	3300027684	Forest Soil	MVWDNKESWMELCELAAQEKDPTKLMALIGEIDRLLESKEQSVRKPPSSVAGNPIEKAR
Ga0209580_103788621	3300027842	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKALSSTTENPTK
Ga0209693_100588701	3300027855	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR
Ga0209167_102630581	3300027867	Surface Soil	VFQHMWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPCSTGENPTTKAS
Ga0209275_100070316	3300027884	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKAKADIG
Ga0209380_100608612	3300027889	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR
Ga0209006_100209464	3300027908	Forest Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMAKAPGSVAENPDTKGS
Ga0209168_101611341	3300027986	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKAPSSTTENPTK
Ga0209168_105428972	3300027986	Surface Soil	MELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGETPTTKAS
Ga0308309_108832971	3300028906	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTRAPAENPAKNPR
Ga0222749_102442283	3300029636	Soil	MVWDNKETWMELCELAAQEKKQVKLMALIGEIDRLLETKQQGVTRAP
Ga0222749_104362172	3300029636	Soil	MVWHNKETWMELCELAAQEKDPVKLMALIADIDRLLETKQQRVTRAPAENPAKNPR
Ga0222749_106558822	3300029636	Soil	WDKKESWLELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0307482_10363071	3300030730	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKTPSSTTENPIEKLS
Ga0307482_12747281	3300030730	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLESKDQRVTKAPSLTAENPIEKAS
Ga0265765_10260152	3300030879	Soil	MVWDKKESWMELCELAAQEKDPKKLMALIGEIDRLLEAKHQCVAKASESVTANPAKKAD
Ga0138302_12309071	3300030937	Soil	MVRDKKESWTELCELAAQEQDPTKLMALIGEIDRLLQSKEQRVAKAPSSTTENPTK
Ga0073994_100640492	3300030991	Soil	MVWDRKESWVELCELAAQEKDPTKLMVLIGEIDRLLESKQQYVRKAPSSVPENPGKAS
Ga0170834_1076677231	3300031057	Forest Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLWEAKHPCVAAPASVTENPAKTAS
Ga0310686_1001352013	3300031708	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Ga0310686_1027059973	3300031708	Soil	MVWDKKESWMELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0310686_1116592821	3300031708	Soil	MVWDNKETWMQLCELAAQEKDPNKLMALIGEIERLLESKEQRVAKASDLVAENPTEKVR
Ga0310686_1157615214	3300031708	Soil	MELCELAAQEKDPKKLIALIGEIDRLLEAKRQCVAKAPESVTANPAKQGHLT
Ga0310686_1168286301	3300031708	Soil	HGMCGQQGMILGSGLSPEGTVMVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSSPVAENPIEKAR
Ga0310686_1190290812	3300031708	Soil	MVWDDKDSWMELCELAVQEKDPAKLMALIGEIDRLLETKEQSARKSASSVAGNPIEKAR
Ga0307476_100205482	3300031715	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKLS
Ga0307476_103596781	3300031715	Hardwood Forest Soil	MVWDSKENWMELCRLAAQEKDPAKLMVLIGEIERLLELKEQRLEKVARLVDK
Ga0307474_106414632	3300031718	Hardwood Forest Soil	MVWDNKESWMELCELAAQEKDTTKLMALIGEIDRLLDAKQQRVTKAPDLVAENPADKAS
Ga0307475_104176732	3300031754	Hardwood Forest Soil	LEVVLEPGGTTMVWDNKESWMELCELAAQEKDPVKMMALIGEIDRLLETKQQRVPKAPDSVTENPAEKRS
Ga0307478_101559012	3300031823	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPSSTTENSIEKLS
Ga0307478_102883381	3300031823	Hardwood Forest Soil	MVWDKNESWMELCELAAQKKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKKAS
Ga0307478_105585291	3300031823	Hardwood Forest Soil	VFLSPEGGWSGTKKKAWMELCELAAQEKRPHKADGLIGEIDRLLESKEQRVTKVPDSVIGNPTRKAS
Ga0307478_116679852	3300031823	Hardwood Forest Soil	MVWNNKEGWMELCELATQEKDPTKLMALIGEIDRLLEAKQQRVTKAPDLVAENPADKAG
Ga0307479_101719463	3300031962	Hardwood Forest Soil	MVWDRKESWVELCELAVQEKDPTKLMALIGEIDRLLESKAQRVIKAPSSTSENLSEKTS
Ga0307479_108178643	3300031962	Hardwood Forest Soil	MVWDKDESWMELCELAAQEKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKKAS
Ga0348332_114408962	3300032515	Plant Litter	GDIMAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Ga0348332_129770891	3300032515	Plant Litter	RRAVMVWDNKESWMELCELAAQEKDPRKLMALLGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0348332_139444301	3300032515	Plant Litter	MCGQQGMILGSGLSPEGTVMVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSSPVAENPIEKAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078960

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences