Metagenome / Metatranscriptome Family F078901

Basic Information
Family ID	F078901
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	46 residues
Representative Sequence	TLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Number of Associated Samples	105
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.86 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	93.10 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Bacteria (93.103 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.069 % of family members)
Environment Ontology (ENVO)	Unclassified (27.586 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.793 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.38% Coil/Unstructured: 71.62%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00652	Ricin_B_lectin	6.90
PF07859	Abhydrolase_3	3.45
PF13620	CarboxypepD_reg	3.45
PF13418	Kelch_4	1.72
PF00593	TonB_dep_Rec	1.72
PF04679	DNA_ligase_A_C	1.72
PF00753	Lactamase_B	1.72
PF13365	Trypsin_2	0.86
PF01507	PAPS_reduct	0.86
PF13442	Cytochrome_CBB3	0.86
PF07883	Cupin_2	0.86
PF05988	DUF899	0.86
PF07995	GSDH	0.86
PF12852	Cupin_6	0.86
PF08327	AHSA1	0.86
PF00596	Aldolase_II	0.86
PF01575	MaoC_dehydratas	0.86
PF01593	Amino_oxidase	0.86
PF01193	RNA_pol_L	0.86
PF04542	Sigma70_r2	0.86
PF02276	CytoC_RC	0.86
PF00106	adh_short	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	3.45
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.72
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG1761	DNA-directed RNA polymerase, subunit L/RPAC2	Transcription [K]	0.86
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.86
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.10 %
Unclassified	root	N/A	6.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	62.07 %
Unclassified	root	N/A	6.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.93 %
Unclassified	root	N/A	6.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.72 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.07 %
Unclassified	root	N/A	6.90 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.86 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.86 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.07 %
Unclassified	root	N/A	6.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.86 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.07 %
Unclassified	root	N/A	6.90 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.86 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.07 %
Unclassified	root	N/A	6.90 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.86 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.07 %
Unclassified	root	N/A	6.90 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.86 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.86 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106162536	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300000956\|JGI10216J12902_102188469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	544	Open in IMG/M
3300003995\|Ga0055438_10237782	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300004156\|Ga0062589_100429017	All Organisms → cellular organisms → Bacteria → Acidobacteria	1086	Open in IMG/M
3300004156\|Ga0062589_102226162	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300004157\|Ga0062590_102314792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300004480\|Ga0062592_102532358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300005166\|Ga0066674_10170468	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300005178\|Ga0066688_10811381	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300005332\|Ga0066388_104427667	Not Available	716	Open in IMG/M
3300005367\|Ga0070667_102170556	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005441\|Ga0070700_100443416	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300005451\|Ga0066681_10743023	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300005466\|Ga0070685_10341597	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300005471\|Ga0070698_101817704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300005518\|Ga0070699_101257882	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005545\|Ga0070695_101905786	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300005568\|Ga0066703_10697971	Not Available	584	Open in IMG/M
3300005718\|Ga0068866_11273508	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300005764\|Ga0066903_108490324	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300006196\|Ga0075422_10079288	All Organisms → cellular organisms → Bacteria → Acidobacteria	1232	Open in IMG/M
3300006358\|Ga0068871_100380558	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300006800\|Ga0066660_11361944	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300006844\|Ga0075428_100316740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1676	Open in IMG/M
3300006845\|Ga0075421_101513107	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300006852\|Ga0075433_10757063	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300006903\|Ga0075426_11427058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300006903\|Ga0075426_11460802	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300006914\|Ga0075436_100166934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	1553	Open in IMG/M
3300006969\|Ga0075419_11038698	Not Available	598	Open in IMG/M
3300009012\|Ga0066710_100897263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300009038\|Ga0099829_10508259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1000	Open in IMG/M
3300009038\|Ga0099829_11612601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300009100\|Ga0075418_10042207	All Organisms → cellular organisms → Bacteria	4924	Open in IMG/M
3300009147\|Ga0114129_13273146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300009156\|Ga0111538_10079109	All Organisms → cellular organisms → Bacteria	4184	Open in IMG/M
3300009156\|Ga0111538_12725888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300009156\|Ga0111538_13053035	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300009162\|Ga0075423_12078186	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300009167\|Ga0113563_11971727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300009610\|Ga0105340_1149605	Not Available	962	Open in IMG/M
3300009810\|Ga0105088_1082558	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300010038\|Ga0126315_10629965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300010322\|Ga0134084_10448999	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300010323\|Ga0134086_10366468	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300010333\|Ga0134080_10388572	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300010362\|Ga0126377_11793700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300010398\|Ga0126383_13506214	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300010403\|Ga0134123_13072415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300011120\|Ga0150983_10941580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300011120\|Ga0150983_14216379	Not Available	544	Open in IMG/M
3300011414\|Ga0137442_1146263	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300011430\|Ga0137423_1158306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300011431\|Ga0137438_1102000	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300012133\|Ga0137329_1057984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300012137\|Ga0137346_1012473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	952	Open in IMG/M
3300012202\|Ga0137363_10563279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300012225\|Ga0137434_1075428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300012360\|Ga0137375_11143561	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300012912\|Ga0157306_10074493	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300012922\|Ga0137394_10181948	All Organisms → cellular organisms → Bacteria → Acidobacteria	1793	Open in IMG/M
3300012931\|Ga0153915_13050222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300014166\|Ga0134079_10586424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300014269\|Ga0075302_1167360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300014325\|Ga0163163_12277485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	601	Open in IMG/M
3300014862\|Ga0180096_1015256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300015371\|Ga0132258_10092520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7099	Open in IMG/M
3300015372\|Ga0132256_100574027	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300015372\|Ga0132256_101874588	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300015373\|Ga0132257_100832047	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300015373\|Ga0132257_101234787	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300015374\|Ga0132255_105352943	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300015374\|Ga0132255_106111029	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300017792\|Ga0163161_12051048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300017930\|Ga0187825_10403216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300017936\|Ga0187821_10277452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300018077\|Ga0184633_10321869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300019248\|Ga0180117_1314082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300020198\|Ga0194120_10359710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300020583\|Ga0210401_10021385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6204	Open in IMG/M
3300021051\|Ga0206224_1019014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300021362\|Ga0213882_10412329	Not Available	572	Open in IMG/M
3300021420\|Ga0210394_10074764	All Organisms → cellular organisms → Bacteria	2931	Open in IMG/M
3300022504\|Ga0242642_1030456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300022525\|Ga0242656_1030426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300022529\|Ga0242668_1098322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300022717\|Ga0242661_1037950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300025555\|Ga0210121_1028728	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300025901\|Ga0207688_10179778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1261	Open in IMG/M
3300025921\|Ga0207652_10456956	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300025931\|Ga0207644_10162120	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300025942\|Ga0207689_10859366	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300025960\|Ga0207651_10359073	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300025960\|Ga0207651_10884244	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300026089\|Ga0207648_11469865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300026116\|Ga0207674_11602025	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300026550\|Ga0209474_10403753	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300027674\|Ga0209118_1096727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300027765\|Ga0209073_10449218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300027835\|Ga0209515_10027856	All Organisms → cellular organisms → Bacteria → Proteobacteria	4997	Open in IMG/M
3300027869\|Ga0209579_10388635	Not Available	756	Open in IMG/M
3300027882\|Ga0209590_10882430	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300027917\|Ga0209536_100490676	Not Available	1533	Open in IMG/M
3300027965\|Ga0209062_1219147	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300028885\|Ga0307304_10240265	All Organisms → cellular organisms → Bacteria → Acidobacteria	786	Open in IMG/M
3300031231\|Ga0170824_124509997	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300031455\|Ga0307505_10098798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1309	Open in IMG/M
3300031538\|Ga0310888_10034477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2262	Open in IMG/M
3300031547\|Ga0310887_10688026	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031716\|Ga0310813_10051615	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300031720\|Ga0307469_10864390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300031720\|Ga0307469_11645864	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300031965\|Ga0326597_11575397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	627	Open in IMG/M
3300032180\|Ga0307471_101120089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300033412\|Ga0310810_11350182	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300034149\|Ga0364929_0098065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.55%
Host-Associated	Host-Associated	28.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.17%
Plants	Host-Associated → Plants	28.45%
Aquatic	Environmental → Aquatic	16.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.48%
Sediment	Environmental → Aquatic → Sediment	7.76%
Freshwater	Environmental → Aquatic → Freshwater	6.03%
Marine	Environmental → Aquatic → Marine	2.59%
Roots	Host-Associated → Plants → Roots	1.72%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.86%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.86%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.07%
Loam	Environmental → Terrestrial → Soil → Loam	9.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Lake	Environmental → Aquatic → Freshwater → Lake	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Sand	Environmental → Terrestrial → Soil → Sand	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.86%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.07%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.86%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.86%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.86%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012137	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014862	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020198	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078901

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1061625361	3300000955	Soil	TRTTLNYGDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
JGI10216J12902_1021884692	3300000956	Soil	QPGDVVTLYVWQAKTGALVGRFNKVDFPDGTTMRDSQTGADDGGRADTGVRQ*
Ga0055438_102377821	3300003995	Natural And Restored Wetlands	VVTLYVWQAKTRLPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0062589_1004290172	3300004156	Soil	QAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0062589_1022261622	3300004156	Soil	VWQAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0062590_1023147922	3300004157	Soil	RTTIQPGDIVTLYVWQAKTGNLVGRFNKVDFPDGTTMRDSQTGADDGSRADTGVRQ*
Ga0062592_1025323581	3300004480	Soil	GDVVTLYVWAAKTGAHAGRFNKVDFPDGTTMRDTQTGGDDGGRADTGVRQ*
Ga0066674_101704681	3300005166	Soil	DVVTLYVWQAKTRAPVGRFNKVVFADGSTMRDTQTGADDGGRADTDVGR*
Ga0066688_108113811	3300005178	Soil	VVTLYVWPAKTKLPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0066388_1044276672	3300005332	Tropical Forest Soil	KTKATVGRFNKVVLADGTIMRDTQTGADDGGRADTDVGR*
Ga0070667_1021705561	3300005367	Switchgrass Rhizosphere	DVVTLYVWQAKTRKPVGRFNKVVFADGSTMRDTQTGADDGTRADTEVGRGGH*
Ga0070700_1004434161	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	GSLAAGDVVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0066681_107430232	3300005451	Soil	VTLYVWQAKTKVPVGRFNKVVFADGTTMRDTQTGADDGKRADTDVRQ*
Ga0070685_103415971	3300005466	Switchgrass Rhizosphere	LGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0070698_1018177042	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	QTKTGAPVGRFNKVELPDGTTMRDTQTGADDGGRADTGQRN*
Ga0070699_1012578821	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0070695_1019057861	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GDVVTLYVWQAKTKAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0066703_106979711	3300005568	Soil	TGLTVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR*
Ga0068866_112735081	3300005718	Miscanthus Rhizosphere	KAPVGRFNKVEFADGTVMRDTQTGADDGGRADTEVRP*
Ga0066903_1084903241	3300005764	Tropical Forest Soil	AKTKAPVGRFNKVEFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0075422_100792881	3300006196	Populus Rhizosphere	RTTLSYGDVVTLYVWQAKTKAPVGRFNKVEFADGTVMRDTQTGADDGGRADTEVRP*
Ga0068871_1003805581	3300006358	Miscanthus Rhizosphere	KTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0066660_113619442	3300006800	Soil	LYVWQAKTKVPVGRFNKVVFADGTTMRDTQTGADDGGRADTDVRQ*
Ga0075428_1003167403	3300006844	Populus Rhizosphere	YVWKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0075421_1015131072	3300006845	Populus Rhizosphere	KVTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGQRN*
Ga0075433_107570632	3300006852	Populus Rhizosphere	TKAPVGRFNKVEFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0075426_114270582	3300006903	Populus Rhizosphere	KTKAPVGRFNKVVLADGTTMRDTQTGADDGGRADTDVGR*
Ga0075426_114608021	3300006903	Populus Rhizosphere	VPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0075436_1001669341	3300006914	Populus Rhizosphere	LNYGDVVTLYVWQAKTKAPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0075419_110386981	3300006969	Populus Rhizosphere	AKTKAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0066710_1008972633	3300009012	Grasslands Soil	GDVVTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0099829_105082591	3300009038	Vadose Zone Soil	ITVYVWQAKTRLPVGRVNKVMLADGTLLRDSQTGADNGGRADTDLR*
Ga0099829_116126011	3300009038	Vadose Zone Soil	YGDVVTLYVWQAKTKVPVGRFNKVVFADGTTMRDTQTGADDGGRADTDVRQ*
Ga0075418_100422071	3300009100	Populus Rhizosphere	KTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ*
Ga0114129_132731462	3300009147	Populus Rhizosphere	LYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0111538_100791095	3300009156	Populus Rhizosphere	HAGRFNKVDLPDGTTMRDTQTGGDDGGRADTGVRQ*
Ga0111538_127258881	3300009156	Populus Rhizosphere	TGATVGRFNKVDFPDGTTMRDTQRGGDDGGRADTGVRN*
Ga0111538_130530351	3300009156	Populus Rhizosphere	IQPGDVVTLYVWQAKTRALVGRFNKVDFSDGTTMRDSQTGADDGSRADTGVRQ*
Ga0075423_120781862	3300009162	Populus Rhizosphere	WQAKTKAPVGRFNKVEFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0113563_119717272	3300009167	Freshwater Wetlands	APGDVVTLYVWQAKTGAYVGRFNKVDFPDGTTMRDTQTGADDGGRTDQGVRQ*
Ga0105340_11496051	3300009610	Soil	AKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0105088_10825582	3300009810	Groundwater Sand	VTLYVWQAKTRLPVGRFNKVILADGSTMRDTQTGADDGGRADTEVGR*
Ga0126315_106299653	3300010038	Serpentine Soil	VTLYVWRAKTGATVGRFNKVDFPDGTTMRDTQRGADDGGRTDGGVRN*
Ga0134084_104489991	3300010322	Grasslands Soil	PVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0134086_103664681	3300010323	Grasslands Soil	RTTLNYGDVVTLYVWQAKTKVPVGRFNKVVFADGTTMRDTQTGADDGGRADTDVRQ*
Ga0134080_103885721	3300010333	Grasslands Soil	KVPVGRFNKVVFADGTTMRDTQTGADDGRRADTDVRQ*
Ga0126377_117937001	3300010362	Tropical Forest Soil	KTKAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTGVRQ*
Ga0126383_135062142	3300010398	Tropical Forest Soil	VTLYVWQAKTHAPVGRFNKVILADGTTMRDTQTGADDGGRADTEVGR*
Ga0134123_130724152	3300010403	Terrestrial Soil	LYAWQAKTRVPVGRFNKVVFSDGSTMRDTQTGADDGGRADTGQRN*
Ga0150983_109415801	3300011120	Forest Soil	VTLYVWQAKTGLLVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR*
Ga0150983_142163791	3300011120	Forest Soil	HLTVGRFNKVVLADGSTMRDTQTGADDGRRADTGVGR*
Ga0137442_11462632	3300011414	Soil	TKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0137423_11583061	3300011430	Soil	WKAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGLRQ*
Ga0137438_11020002	3300011431	Soil	VTLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0137329_10579841	3300012133	Soil	DVVTLYVWKAKTGANAGRFNKVDLPDGTTMRDTQTGGDDGGRADTGLRQ*
Ga0137346_10124731	3300012137	Soil	TRTTVAPGDVVTLYVWRAKTGAHAGRFNKVEFADGTTMRDTQTGGDDGGRADTGLRQ*
Ga0137363_105632791	3300012202	Vadose Zone Soil	LPVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR*
Ga0137434_10754282	3300012225	Soil	VTLYVWRAKTGAHAGRFNKVEFADGTTMRDTQTGGDEGGRADTGLRQ*
Ga0137375_111435611	3300012360	Vadose Zone Soil	LYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ*
Ga0157306_100744931	3300012912	Soil	VVTLYVWQAKTKEPVGRFNKVEFSDGTVLRDTQRGADDGGRADTGVRQ*
Ga0137394_101819482	3300012922	Vadose Zone Soil	VWQAKTRVPVGRFNKVIFADGTTMRDTQTGADDGGRADTDVRQ*
Ga0153915_130502222	3300012931	Freshwater Wetlands	AYGDVVTLYVWQAKTKLPVGRFNKVVFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0134079_105864241	3300014166	Grasslands Soil	KAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0075302_11673602	3300014269	Natural And Restored Wetlands	VTLYVWQAKTRLPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ*
Ga0163163_122774852	3300014325	Switchgrass Rhizosphere	WTRTTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0180096_10152562	3300014862	Soil	WTRTTLAPGDVVNLYVWKAKTGAHAGRFNKVEFADGTTMRDTQTGGDDGGRTDTGVRQ*
Ga0132258_100925201	3300015371	Arabidopsis Rhizosphere	TTLGFGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0132256_1005740271	3300015372	Arabidopsis Rhizosphere	YGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0132256_1018745881	3300015372	Arabidopsis Rhizosphere	TKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0132257_1008320472	3300015373	Arabidopsis Rhizosphere	GDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0132257_1012347872	3300015373	Arabidopsis Rhizosphere	GYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ*
Ga0132255_1053529431	3300015374	Arabidopsis Rhizosphere	KLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0132255_1061110292	3300015374	Arabidopsis Rhizosphere	CPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ*
Ga0163161_120510481	3300017792	Switchgrass Rhizosphere	KAPVGRFNKVEFADGTVMRDTQTGADDGGRADTEVRP
Ga0187825_104032161	3300017930	Freshwater Sediment	DVVTLYVWQAKTGLPVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0187821_102774522	3300017936	Freshwater Sediment	VTLYVWQAKTGLPVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0184633_103218692	3300018077	Groundwater Sediment	TLQPGDVVTLYVWQAKTGATVGRFNKVDLADGTTMRDTQRGGDDGGRADTGVRQ
Ga0180117_13140822	3300019248	Groundwater Sediment	GVVTLYVWQAKTKVPVGRFNKVEFSDGTTMRDTQTGADDGGRADTGVRQ
Ga0194120_103597101	3300020198	Freshwater Lake	HVGRFNKVDFADGTTMRDTQRGGDDGGRSDTGVRQ
Ga0210401_100213851	3300020583	Soil	VTLYVWQAKTGLLVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0206224_10190141	3300021051	Deep Subsurface Sediment	KTGAHVGRFNKVDFADGTTMRDTQTGGDDGGRADTGLRQ
Ga0213882_104123291	3300021362	Exposed Rock	HLPVGRFNKVLFKDGSVLRDTQTGADDGGRADTGVRN
Ga0210394_100747644	3300021420	Soil	VVTLYVWQAKTGLLVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0242642_10304561	3300022504	Soil	HLTVGRFNKVVFADGTVMRDTQTGTDTGGRADTGVGR
Ga0242656_10304261	3300022525	Soil	RSSLKPGDVVSLYVWQAKTHVTVGRFNKVVFADGTVMRDTQTGTDTGGRADTGVGR
Ga0242668_10983221	3300022529	Soil	TSLKPGDVVTLYVWQTKNGLFVGRLNKVVFDDCTVMRDTQTGADNGGRADTGVGR
Ga0242661_10379502	3300022717	Soil	SLYVWQAKTHVTVGRFNKVVFADGTVMRDTQTGTDTGGRADTGVGR
Ga0210121_10287281	3300025555	Natural And Restored Wetlands	VWQAKSGEHVGRFNKVEFDDGTVLRDSQRGADDGGRSDGGLRQ
Ga0207688_101797783	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	KTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207652_104569561	3300025921	Corn Rhizosphere	KTKLPVGRLNKVEFSDGTVMRDTQTGADDGGRADTGVRQ
Ga0207644_101621202	3300025931	Switchgrass Rhizosphere	TLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207689_108593661	3300025942	Miscanthus Rhizosphere	LYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207651_103590732	3300025960	Switchgrass Rhizosphere	PVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0207651_108842443	3300025960	Switchgrass Rhizosphere	YVWQAKTRVPVGRLNKVEFPDGTTMRDTQTGADDGGRADTDVRQ
Ga0207648_114698651	3300026089	Miscanthus Rhizosphere	KAKTGATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0207674_116020251	3300026116	Corn Rhizosphere	VVTLYVWQAKTKLPVGRLNKVEFSDGTVMRDTQTGADDGGRADTGVRQ
Ga0209474_104037532	3300026550	Soil	QAKTKVPVGRFNKVVFADGTTMRDTQTGADDGKRADTDVRQ
Ga0209118_10967271	3300027674	Forest Soil	WTRTTMKPGDVITLYLWKAKTGLQVGRLNKVILADGTVMRDTQTGADNGARADTGVGR
Ga0209073_104492182	3300027765	Agricultural Soil	KQGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGADNGGRADTGVGR
Ga0209515_100278561	3300027835	Groundwater	LAYGDVVTLYVWQAKTRVPVGRFNKVVFADGSTMRDTQTGADDGGRADTDVGR
Ga0209579_103886353	3300027869	Surface Soil	TIYIWKSKTGRTVGRLNKVILADGTTMRDTQTGADNGGRADTTVGR
Ga0209590_108824302	3300027882	Vadose Zone Soil	TLYVWQAKTKVPVGRFNKVIFSDGTTMRDTQTGADDGGRADTDVRQ
Ga0209536_1004906762	3300027917	Marine Sediment	HVGRFNKVEFDDGTVLRDSQRGADDGGRSDAGLRQ
Ga0209062_12191471	3300027965	Surface Soil	PVGRFNKVVLADGKVMRDTQTGADNGGRADKDVGR
Ga0307304_102402652	3300028885	Soil	DVVTLYVWQAKTRVPVGRFNKVVFADGTTMRDTQTGADDGGRADTDVRQ
Ga0170824_1245099971	3300031231	Forest Soil	TLKPGDVVTLYVWQAKTGLTVGRFNKVVFADGKVMRDTQTGTDNGGRADTDVGR
Ga0307505_100987982	3300031455	Soil	GDVVTLYVWQAKTGVTVGRFNKVDFSDGTTMRDTQTGGDDGGRADTGQRN
Ga0310888_100344773	3300031538	Soil	GATVGRFNKVDFADGTTMRDTQRGGDDGGRADTGVRQ
Ga0310887_106880262	3300031547	Soil	TLYVWQAKTKVPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0310813_100516151	3300031716	Soil	NTLGYGDVVTLYVWPAKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ
Ga0307469_108643901	3300031720	Hardwood Forest Soil	VVTLYVWQAKTKAPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0307469_116458642	3300031720	Hardwood Forest Soil	AKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADTDVRQ
Ga0326597_115753972	3300031965	Soil	EPVGRFNKVEFADGTVMRDTQRGADDGGRADVGVRD
Ga0307471_1011200892	3300032180	Hardwood Forest Soil	GAPVGRFNKVDLPDGTTMRDTQTGADDGGRADTGQRN
Ga0310810_113501821	3300033412	Soil	AKTKLPVGRFNKVEFSDGTVMRDTQTGADDGGRADGDVRQ
Ga0364929_0098065_3_161	3300034149	Sediment	APGDVVNLYVWKAKTGAHAGRFNKVEFADGTTMRDTQTGGDEGGRADTGVRQ

Hidden Markov Model


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