Metagenome Family F078880

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078880
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	110 residues
Representative Sequence	VVRRLAAFLGKVREDVELLFGLSRAEVQEDLGVYWAALNILVMRGELDPTTPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVEASQNLLREETYLSREA
Number of Associated Samples	49
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.07 %
% of genes near scaffold ends (potentially truncated)	32.76 %
% of genes from short scaffolds (< 2000 bps)	85.34 %
Associated GOLD sequencing projects	45
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (78.448 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (22.414 % of family members)
Environment Ontology (ENVO)	Unclassified (32.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.414 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.19% β-sheet: 7.09% Coil/Unstructured: 39.72%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF09335	SNARE_assoc	57.76
PF00989	PAS	3.45
PF00919	UPF0004	2.59
PF01872	RibD_C	2.59
PF02749	QRPTase_N	0.86
PF01047	MarR	0.86
PF13462	Thioredoxin_4	0.86
PF01797	Y1_Tnp	0.86
PF13365	Trypsin_2	0.86
PF00903	Glyoxalase	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	57.76
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	57.76
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	57.76
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.59
COG0621	tRNA A37 methylthiotransferase MiaB	Translation, ribosomal structure and biogenesis [J]	2.59
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.59
COG0157	Nicotinate-nucleotide pyrophosphorylase	Coenzyme transport and metabolism [H]	0.86
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.86
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	69.83 %
Unclassified	root	N/A	21.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	69.83 %
Unclassified	root	N/A	21.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	25.86 %
Unclassified	root	N/A	21.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000231\|TB_LI09_4DRAFT_10013499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3766	Open in IMG/M
3300000231\|TB_LI09_4DRAFT_10028022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2486	Open in IMG/M
3300004481\|Ga0069718_15842788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	960	Open in IMG/M
3300006224\|Ga0079037_101085706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	794	Open in IMG/M
3300009053\|Ga0105095_10179968	Not Available	1157	Open in IMG/M
3300009053\|Ga0105095_10461197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	703	Open in IMG/M
3300009053\|Ga0105095_10584858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	621	Open in IMG/M
3300009091\|Ga0102851_11146208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	853	Open in IMG/M
3300009153\|Ga0105094_10284982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	951	Open in IMG/M
3300009153\|Ga0105094_10571879	Not Available	659	Open in IMG/M
3300009153\|Ga0105094_10984796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	500	Open in IMG/M
3300009166\|Ga0105100_10212980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1152	Open in IMG/M
3300009166\|Ga0105100_10239159	Not Available	1085	Open in IMG/M
3300009166\|Ga0105100_11015020	Not Available	520	Open in IMG/M
3300009167\|Ga0113563_12429670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	631	Open in IMG/M
3300010324\|Ga0129297_10278315	Not Available	756	Open in IMG/M
3300012931\|Ga0153915_10115923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2866	Open in IMG/M
3300012931\|Ga0153915_10278986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1860	Open in IMG/M
3300012931\|Ga0153915_10442941	Not Available	1477	Open in IMG/M
3300012931\|Ga0153915_10494665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1397	Open in IMG/M
3300012931\|Ga0153915_10611783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1253	Open in IMG/M
3300012931\|Ga0153915_11272854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	859	Open in IMG/M
3300012931\|Ga0153915_11427427	Not Available	809	Open in IMG/M
3300012931\|Ga0153915_11463597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	799	Open in IMG/M
3300012931\|Ga0153915_11843666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	708	Open in IMG/M
3300012931\|Ga0153915_12164828	Not Available	651	Open in IMG/M
3300012931\|Ga0153915_13523016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	506	Open in IMG/M
3300012964\|Ga0153916_10246595	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300012964\|Ga0153916_10301735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1638	Open in IMG/M
3300012964\|Ga0153916_10487462	Not Available	1302	Open in IMG/M
3300012964\|Ga0153916_10731173	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012964\|Ga0153916_10847806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	994	Open in IMG/M
3300012964\|Ga0153916_10856365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	989	Open in IMG/M
3300012964\|Ga0153916_11736287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	697	Open in IMG/M
3300012964\|Ga0153916_12439769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	589	Open in IMG/M
3300012964\|Ga0153916_12455359	Not Available	587	Open in IMG/M
3300012964\|Ga0153916_13108578	Not Available	522	Open in IMG/M
3300018055\|Ga0184616_10019903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2040	Open in IMG/M
3300018055\|Ga0184616_10042893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1488	Open in IMG/M
3300018055\|Ga0184616_10047150	Not Available	1430	Open in IMG/M
3300018055\|Ga0184616_10072687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1190	Open in IMG/M
3300018055\|Ga0184616_10162037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	830	Open in IMG/M
3300018070\|Ga0184631_10031167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1860	Open in IMG/M
3300018070\|Ga0184631_10098425	Not Available	1137	Open in IMG/M
3300018089\|Ga0187774_10333273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	897	Open in IMG/M
3300022208\|Ga0224495_10043657	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300025174\|Ga0209324_10681085	Not Available	592	Open in IMG/M
3300025327\|Ga0209751_10932196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	664	Open in IMG/M
3300027713\|Ga0209286_1310706	Not Available	547	Open in IMG/M
3300027740\|Ga0214474_1325653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	541	Open in IMG/M
3300027811\|Ga0256868_10251141	Not Available	741	Open in IMG/M
3300027900\|Ga0209253_10005949	Not Available	10569	Open in IMG/M
3300030613\|Ga0299915_10275760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1161	Open in IMG/M
3300030613\|Ga0299915_10277876	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300030613\|Ga0299915_10406838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	911	Open in IMG/M
3300030613\|Ga0299915_10534124	Not Available	764	Open in IMG/M
3300031707\|Ga0315291_10574529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1028	Open in IMG/M
3300031746\|Ga0315293_10088398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2642	Open in IMG/M
3300031746\|Ga0315293_10091143	All Organisms → cellular organisms → Bacteria	2597	Open in IMG/M
3300031746\|Ga0315293_10459024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	991	Open in IMG/M
3300031746\|Ga0315293_10685367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	765	Open in IMG/M
3300031746\|Ga0315293_10782694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	700	Open in IMG/M
3300031746\|Ga0315293_10859832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	658	Open in IMG/M
3300031746\|Ga0315293_10950471	Not Available	616	Open in IMG/M
3300031746\|Ga0315293_11251654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	513	Open in IMG/M
3300031772\|Ga0315288_10001723	All Organisms → cellular organisms → Bacteria	28394	Open in IMG/M
3300031772\|Ga0315288_10198731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2181	Open in IMG/M
3300031885\|Ga0315285_10061990	All Organisms → cellular organisms → Bacteria	3428	Open in IMG/M
3300031885\|Ga0315285_10468599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	875	Open in IMG/M
3300031949\|Ga0214473_10083189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3743	Open in IMG/M
3300031949\|Ga0214473_10272042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1941	Open in IMG/M
3300031949\|Ga0214473_10359547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1650	Open in IMG/M
3300031949\|Ga0214473_10660358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1146	Open in IMG/M
3300031949\|Ga0214473_10743277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1064	Open in IMG/M
3300031949\|Ga0214473_11197416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	787	Open in IMG/M
3300031952\|Ga0315294_10479302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1143	Open in IMG/M
3300031999\|Ga0315274_10604808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1210	Open in IMG/M
3300032053\|Ga0315284_10138541	All Organisms → cellular organisms → Bacteria	3214	Open in IMG/M
3300032053\|Ga0315284_10355657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1823	Open in IMG/M
3300032070\|Ga0315279_10661217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	643	Open in IMG/M
3300032156\|Ga0315295_10118925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2598	Open in IMG/M
3300032156\|Ga0315295_12100009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	528	Open in IMG/M
3300032173\|Ga0315268_12523076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	528	Open in IMG/M
3300032177\|Ga0315276_10773709	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300032342\|Ga0315286_10026012	All Organisms → cellular organisms → Bacteria → Proteobacteria	6047	Open in IMG/M
3300032342\|Ga0315286_12164569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	512	Open in IMG/M
3300032401\|Ga0315275_12301890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	561	Open in IMG/M
3300032516\|Ga0315273_10375142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1921	Open in IMG/M
3300033416\|Ga0316622_100473958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1422	Open in IMG/M
3300033416\|Ga0316622_100941379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1007	Open in IMG/M
3300033416\|Ga0316622_101647752	Not Available	748	Open in IMG/M
3300033416\|Ga0316622_102626747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	579	Open in IMG/M
3300033433\|Ga0326726_12430488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	509	Open in IMG/M
3300033480\|Ga0316620_10859423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	874	Open in IMG/M
3300033480\|Ga0316620_10916951	Not Available	848	Open in IMG/M
3300033480\|Ga0316620_12161488	Not Available	553	Open in IMG/M
3300033485\|Ga0316626_11952816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	531	Open in IMG/M
3300033486\|Ga0316624_10226760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1466	Open in IMG/M
3300033486\|Ga0316624_10632113	Not Available	935	Open in IMG/M
3300033486\|Ga0316624_11767975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	572	Open in IMG/M
3300033489\|Ga0299912_10081619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	2834	Open in IMG/M
3300033489\|Ga0299912_10135772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2146	Open in IMG/M
3300033489\|Ga0299912_10479068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1005	Open in IMG/M
3300033489\|Ga0299912_10630183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	843	Open in IMG/M
3300033489\|Ga0299912_10913523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	661	Open in IMG/M
3300033489\|Ga0299912_11329295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	518	Open in IMG/M
3300033513\|Ga0316628_100569889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1472	Open in IMG/M
3300033513\|Ga0316628_101277315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	978	Open in IMG/M
3300033513\|Ga0316628_101323098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	960	Open in IMG/M
3300033513\|Ga0316628_102773344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	644	Open in IMG/M
3300034081\|Ga0373911_023857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1001	Open in IMG/M
3300034083\|Ga0373901_152452	Not Available	506	Open in IMG/M
3300034085\|Ga0373908_032017	Not Available	965	Open in IMG/M
3300034089\|Ga0373913_0093374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	811	Open in IMG/M
3300034089\|Ga0373913_0207043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	571	Open in IMG/M
3300034100\|Ga0373910_0105076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	731	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.83%
Engineered	Engineered	5.17%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	62.93%
Terrestrial	Environmental → Terrestrial	31.90%
Bioremediation	Engineered → Bioremediation	5.17%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	56.03%
Soil	Environmental → Terrestrial → Soil	31.03%
Sediment	Environmental → Aquatic → Sediment	6.03%
Metal	Engineered → Bioremediation → Metal	5.17%
Marine	Environmental → Aquatic → Marine	0.86%
Peat	Environmental → Terrestrial → Peat	0.86%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	23.28%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.03%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	5.17%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.72%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.86%
Sediment	Environmental → Aquatic → Marine → Sediment	0.86%
Loam	Environmental → Terrestrial → Soil → Loam	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	23.28%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	20.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.79%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	11.21%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.17%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	5.17%
Cave Water	Environmental → Aquatic → Freshwater → Groundwater → Cave Water	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	22.41%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	18.10%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.03%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	0.86%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000231	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300010324	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034081	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.3	Engineered	Open in IMG/M
3300034083	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.2	Engineered	Open in IMG/M
3300034085	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.3	Engineered	Open in IMG/M
3300034089	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.2	Engineered	Open in IMG/M
3300034100	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.2	Engineered	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB_LI09_4DRAFT_100134993	3300000231	Groundwater	VVPRLSVLFGKIREGIGLLCSPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLQAILRAVQDGWGRWDRKTEARWCQILEEVSVQLLPQEADLTREP*
TB_LI09_4DRAFT_100280221	3300000231	Groundwater	DVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLQAILRAVQDGWGRWDRKTEARWCQILEEVSVQLLPQEADLTREP*
Ga0069718_158427881	3300004481	Sediment	VVRKLAAFLGKIRGGIGLPFGRSRADVQSDLGAYWAALNIYVVRGEVDPTALIPIGYHDGHGFAGFMSLQAVLRTVQDGWGRWDRKTEARWCQILEETSRHLLCRETDLTWER*
Ga0079037_1010857062	3300006224	Freshwater Wetlands	VQEDLGVYWAALNILVTRGELDPATPVPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRRILVEASERLLYEKPHVSREA*
Ga0105095_101799681	3300009053	Freshwater Sediment	VIRRLATFFRRIREDTELLFGLSRAEVQEDLGVYWAALNILVTRGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWVRWERKTEARWRRILVEASERLLYEEPYVSREA*
Ga0105095_104611972	3300009053	Freshwater Sediment	MGAAIGRQTVFRRVTIFFADMKETIGMLFGRSRADVQEELGAYWAALNILVMRGDLDGSAPILVGDQRGGGFTGVMSLRAVLRTVQDGWGRWDRKTEARWCQILEDASRSLLQEDATLRT
Ga0105095_105848581	3300009053	Freshwater Sediment	MREAIGLLFGPSRADVQDDLGVYWGALNILVMRGELDPSTPIPVGDHRGRGFAGIMSLQAVLRMVQDGWGRWDRKTEARWCQILAETSENLLYEAHELNCEP*
Ga0102851_111462082	3300009091	Freshwater Wetlands	VFFRKIREDIELLFGLSRAEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRQILVDASQRLLCEEPHLSREP*
Ga0105094_102849821	3300009153	Freshwater Sediment	VIRRLATFFRRLREDTELLFGLSRAEVQEDLGVYWAALNILVTRGELDPATPVPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVDASERLLYEEPHVSREA*
Ga0105094_105718792	3300009153	Freshwater Sediment	MREAIGLLFGPSRADVQDDLGVYWGALNILVMRGELDPSTPIPVGDQRGNGFAGIMSLQAVLRMVQDGWGRWDRKTEARWCQILAETSENLLYEAHELNCEP*
Ga0105094_109847961	3300009153	Freshwater Sediment	MGAAIGRQTVFRRVTIFFADMKETIGMLFGRSRADVQEELGAYWAALNILVMRGDLDGSAPILVGDQRGGGFTGVMSLRAVLRTVQDGWGRWDRKTEARWCQILEDASRNLFQEDATLKT
Ga0105100_102129802	3300009166	Freshwater Sediment	VIRRLAAFFRRIREDIELLFGLSRAEVQEDLGVYWAALNILVTRGELDPATPVPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRRILVEASERLLYEEPHVSREA*
Ga0105100_102391591	3300009166	Freshwater Sediment	MGAAIGRQTVFRRVTIFFADMKETIGMLFGRSRADVQEELGAYWAALNILVMRGDLDGSAPILVGDQRGGGFTGVMSLRAVLRTVQDGWGRWDRKTE
Ga0105100_110150201	3300009166	Freshwater Sediment	MREAIGLLFGPSRADVQDDLGVYWGALNILVMRGELDPSTPIPVGDHRGRGFAGIMSLQAVLRMVQDGWGRWDRKTEARWCQILAETSENLLYEA
Ga0113563_124296701	3300009167	Freshwater Wetlands	VFFRKIREDIELLFGLSRAEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVEASERLLYEKPHVSREA*
Ga0129297_102783151	3300010324	Lake Sediment	VIRKLAVFLGKIRGRIGLPFGRSRADVQGDLGAYWAALNIYVMRGDLDPSTLIPVGDSSGRGFAGFMSLRAVLRTVQDGWGRWDRKTEARWCQILIEASRHLL
Ga0153915_101159233	3300012931	Freshwater Wetlands	MRRAIELPFGPSRADVQGDLGAYWAALNILVMRGDLDRSTPIPVGDRDGRGFAGFMSLQAVLRTVQDSWGRWDRKTEARWCEILAEASRNLLRKETNLSREP*
Ga0153915_102789863	3300012931	Freshwater Wetlands	MRGGIALPFGRSRADVQEDLSAHWAALNILVMRGDLDPTTPIPVGDHRGRGFAGFMSLAAVLRTVQDGWGRWDRETEARWCRILAEASRALLHEDADLIFEP*
Ga0153915_104429413	3300012931	Freshwater Wetlands	LGKIREDIEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDHRGNGFTGVMSMQAVLRTVQNGWGRWDRKTEARWRRILVDASERL
Ga0153915_104946652	3300012931	Freshwater Wetlands	LGKIKENIGLLFAPSRADVQEELGAYWAALNILVMRGDLDGSTPIPVGEHRDGGFAGFVSLRVVLRMVQDGWGRWDRKTEARWCQILEEASRNLLHEDAGLSCEL*
Ga0153915_106117831	3300012931	Freshwater Wetlands	KIREDIELLFELSRAEVQEDVGVDWAALDILVARGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWHRILVEASERLLYEEPHVSR*
Ga0153915_112728542	3300012931	Freshwater Wetlands	VQEDLGAYWAALNILVMRGDLDPSTPIPVGDHRGRGFAGFMSLQAVLRTVQDGWGRWDRKAEARWCQILAEVSRNLLREDASLSCEL*
Ga0153915_114274271	3300012931	Freshwater Wetlands	VVRKLAVILGKMREGIGLPFGRSRAEVQEDLGAYWAALNILVMRGDLDPTTLIPVGDHTGSGFAGFMSLQVILRTVQGGWGRWDRKTEARWCRILVEASRRLLPEDADLSCGR*
Ga0153915_114635972	3300012931	Freshwater Wetlands	VFLAKIREAIRLLFARSRADVQEDLGAHWAALNILVMRGDVDPTTPIPIGDHDGNGFAGFMSLQVVLRTVQDGWGRWDRKTEARWCQILEETTRNLPRKEIDLRREP*
Ga0153915_118436661	3300012931	Freshwater Wetlands	LFGLSRAEVQEDLGVYWAALDILVARGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWRQILVDASERLLYEETPLSREP*
Ga0153915_121648281	3300012931	Freshwater Wetlands	VIRKLTVFVGKIRDDIELLFGLSRAEVQEDLGVYWAALNILVARGEIDPATPIPVGDHRGNGFAGIMSVQAVLRTVQSGWGRWDRKTEARWRRILMEASERLLYEETPLNREP*
Ga0153915_135230161	3300012931	Freshwater Wetlands	EDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWRRILMEASQRLLYEDTHISPKA*
Ga0153916_102465953	3300012964	Freshwater Wetlands	VFFRKIREDIELLFGLSRAEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRRILMEASERLL
Ga0153916_103017353	3300012964	Freshwater Wetlands	RSRAEVQEDLGAYWAALNILVMRGDLDPTTLIPVGDHTGSGFAGFMSLQVILRTVQGGWGRWDRKTEARWCRILVEASRQLLPEDADLSCGR*
Ga0153916_104874621	3300012964	Freshwater Wetlands	LGKIREDVELLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDPHGNGFAGFMSVQAVLRTVQNGWGRWDRKTEARWRRILVEASERLIYEEPRLSR*
Ga0153916_107311732	3300012964	Freshwater Wetlands	VARKLAAFLAKIRENIRLLFARSRADVQEDLGAQWAALNILVMRGDVDPTTPIPIGDHDGNGFAGFMSLQVVLRTVQDGWGRWDRKTEARWCQILEETTRNLPRKEIDLRREP*
Ga0153916_108478061	3300012964	Freshwater Wetlands	VVPRLSVLFGKIREGIEVLCSPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGSMSLQAVLRTVQSGWGRWDRKTEARWCQILEQTSVQLLPLDADLSCER*
Ga0153916_108563652	3300012964	Freshwater Wetlands	MGAASGRQTVIRKLAAFLGKIKEDIGLLFAPSRADVQEELGAYWAALNILVMRGDLDGSTPIPVGDHHEGGFAGFMSLRAVLRMVQNGWGRWDRKTEARWCQILEEASRKLLHEDAGLSCEL*
Ga0153916_117362872	3300012964	Freshwater Wetlands	VFFRKIREDIELLFGLSRAEVQEDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQSGWGRWDRKTEARWRRILMEASQRLLYEDTHISPKA*
Ga0153916_124397692	3300012964	Freshwater Wetlands	MIKRDIRPLFGPSRADVQEDLGAYWAALNILVMRGDLDGSTPIPVGDHRGRGFAGFMSLQALLRTVQDGWGRWDRKTEARWCQILVEASRNLLREEADPSYQA*
Ga0153916_124553592	3300012964	Freshwater Wetlands	VIRRLTVFLGKIREDIELLFGLSRAEVQEDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWHRILVEASERLLYEEPHVSR*
Ga0153916_131085781	3300012964	Freshwater Wetlands	MREAFGLLFRRSRADVQEELGAYWAALNILVMRGDLDPAALIPVGDHREGGFVGFMSLRAVLRMVQDGWGRWDRKTEARWCQILEDASRDLLREHTDLTCER*
Ga0184616_100199032	3300018055	Groundwater Sediment	MEQASSNRPGEGRQQVVPRLSVLFCRIREGIELLCSPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLQVILRMVQDGWGRWDRKTEARWCQILEEASVQLLPQEADLTREP
Ga0184616_100428932	3300018055	Groundwater Sediment	VVPRLSVLFGQIRESIGLPFGRSRADVQEDLGAYWAALNILVMRGDLDPSTLIPVGDHRGGGFAGFMSLQVILRTVQDGWGRWDRKTEARWCQILTEASQNLLREKTDLTCEP
Ga0184616_100471503	3300018055	Groundwater Sediment	VVRKLAVILGKIREGIGLPFARSRGDVQEDLSAHWAALNILVMRGYLDPSTLIPVSDHREGGFAGSMSLRVVLSTVQDGWGRWDRKTEARWCAILMEASVHLLPEDADLSYER
Ga0184616_100726872	3300018055	Groundwater Sediment	VVEKLTVFLGKMREAIGLLFGPSRTDVQGDLGTYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCHILAEASENLLREDASLSCEPW
Ga0184616_101620372	3300018055	Groundwater Sediment	MGAASGRQTVVRKLAVILGKMREGIGVPFGRSRAEVQEDLGAYWAALHILVMRGDLDPTTLIPVGDHTGSGFAGFMSLQVILRTVQGGWGRWDRKAEARWCRILVEASHQLLPEDADLSCGP
Ga0184631_100311671	3300018070	Groundwater Sediment	VQEDLGAYWAALNILVMRGDLDASTLIPVGDHRGGGFAGFMSLQVILRTVQDGWGRWDRKTEARWCQILAEASQNLLREKTDLTCEP
Ga0184631_100984253	3300018070	Groundwater Sediment	VVRKLAVILGKIREGIGLPFARSRGDVQEDLSAHWAALNILVMRGYLDPSTLIPVSDHREGGFAGSMSLRVVLSTVQDGWGRWDRKTEARWCQILKEASVQLL
Ga0187774_103332732	3300018089	Tropical Peatland	RAEVQEDLGVYWAALNILVARGELDPTTPVPVGDPRGNGFAGIMSVQAVLRTVQNGWGRWDRKTEARWRRILVEASERFLYEDMHVRHEP
Ga0224495_100436572	3300022208	Sediment	VVRKLTVFLGKVKEDFELLFGLSRAEVQEDLGVYWSALNILVARGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWRRILVDASQRLLYEETPSRKP
Ga0209324_106810852	3300025174	Soil	MEQASSNRPGEGRQQVVPRLSVLFGKIREGIELLCSPSRADVQEDLGAYWAALNILVMRGDLDPSTRIPVGDPRGGGFAGFMSLRAILRAVQDGWGRWDRKTEARWCQILKEASVQLLPQDVDMSCER
Ga0209751_109321962	3300025327	Soil	VIERLTVFLGKMREAIGLLFGPSRTDVQDDLGVYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAVLRAVQDGWGRWDRKTEARWCQILAEASENLLREDASLSCESW
Ga0209286_13107061	3300027713	Freshwater Sediment	VIRRLATFFRRLREDTELLFGLSRAEVQEDLGVYWAALNILVTRGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVDASERLLYEEPHVSREA
Ga0214474_13256531	3300027740	Soil	MGAASGRQTVVRKLAVILGKMREGISLPFGRSRAEVQEDLGAYWAALHILVMRGDLDPTTLIPVGDHTGSGFAGFMSLQVILRTVQGGWGRWDRKTEARWCRILVEASHQLLPEDADLSCGP
Ga0256868_102511412	3300027811	Soil	MGAASGSQAVVRKLAVFFTDMRDAVGLLFGRSRADVQEELGAYWAALNILVMRGDLDPAALIPVGDHREGGFAGFMSLRAVLRMVQDGWGRWDRKTEARWCQILEDASRDLLREHTDLTCER
Ga0209253_100059491	3300027900	Freshwater Lake Sediment	VIRRLATFFRRIREDIELLFGLSRAEVQEDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQSGWGRWDRKTEARWRNILVEASQNLLREDVYLSREP
Ga0299915_102757602	3300030613	Soil	VIRKLAAFLGKIRGGIGLPFGPSRADVQGDLGAYWAALNILVMRGDLDPSTPIPVGDRYGRGFAGFMSLQAVLRIVQDGWGRWDRKTEARWCRILTETSLNLLREEADPSYQA
Ga0299915_102778762	3300030613	Soil	MGAASGRRAVVRKLAVFFTDMRDAVGLLFGRSRADVQEELGAYWAALNILVMRGDLDPAALIPVGDHREGGFAGFMSLRAVLRMVQDGWGRWDRKTEARWCQILEDASHDLLHEHTDLTCER
Ga0299915_104068382	3300030613	Soil	MGAASGSQAVVRKLAVFFTDMRDAVGLLFGRSRADVQEELGAYWAALNILVMRGDLDASTPIPVGDHRGGGFAGFMSLRAVLRMVQDGWGRWDRKTEARWRQILEDASRDLLREHTDLTCER
Ga0299915_105341241	3300030613	Soil	MGAASGRQAVVRKLAVFLADMREAIGLLFRRSRADVQEELGAYWAALNILVMRGDLDASTPIPVGDHREGGFAGFMSLRAVLRMVQDGWGRWDRKTEARWCQILEDASRD
Ga0315291_105745291	3300031707	Sediment	RSYQGARGLQLGVTKGRQTVARKLAVFLGKIREDIRLLFARSRADVQEDLGAHWAALNILVMRGDLDPTTPIPVGDHDGDGFAGFMSLQAILRTVQNGWGRWDRKTEARWCQILVEASRNLTRKEIDLSREP
Ga0315293_100883982	3300031746	Sediment	VVPRLSVLFGKIREGIGQRFAPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRVILRAVQDGWGRWDRKTEARWCQILEEVSGQLLPQEADLTREP
Ga0315293_100911431	3300031746	Sediment	LLFGPSRTDVQGDLGAYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315293_104590242	3300031746	Sediment	VVRKLTAFLDKIKGGIALPFGRSRADVQSDLGAYWAALNIYVVRGEVDPTALIPIGYHDGHGFAGFMSLHAVLRTVQDGWGRWDRKTEARWCQILEEASRNLLCKETDLTWER
Ga0315293_106853672	3300031746	Sediment	VVRKLAAFLAKIREAVRLLFARSRADVQEDLGAHWAALNILVMRGDLDPTTPIPIGYPDGNGFAGFMSLQAILRIVQDGWGRWDRKTEARWCQILVEASRDLPRKEIDLRREP
Ga0315293_107826942	3300031746	Sediment	QVVRRLATFFRRIREDIELLFGLSRAEVQEDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWRQILVDASQRLLYEETYLSREP
Ga0315293_108598322	3300031746	Sediment	ADVQSDLGAYWAALNIYVVRGEVDPTALIPLGYHDGRGFAGFMSLHAVLRTVQDGWGRWDRKTEARWCQILEEASRNLLCKETDLTWER
Ga0315293_109504712	3300031746	Sediment	VVRKLAAFLGKIRGGIGLPFGRSRADVQSDLGTYWAALNIYVVRGEVDPTALIPIGYHDGRGFAGFMSLHAVLRTVQDGWGRWDRKTEARWCQ
Ga0315293_112516541	3300031746	Sediment	VVRKLTAFLDKIKGGIVLPFGRSRADVQSDLGAYWAALNIYIVRGEVDPTTLIAIGYHDGRGFAGFMSLQAILRTVQDGWGRWDRKTEARWCQILEETSRHLLCRETDLTWER
Ga0315288_100017236	3300031772	Sediment	VVRKLAAFLGKIRGGIGLPFGRSRADVQSDLGAYWAALNIYVVRGEVDPTALIPLGYHDGRGFAGFMSLHAVLRTVQDGWGRWDRKTEARWCQILEEASRNLLCKETDLTWER
Ga0315288_101987313	3300031772	Sediment	TVIEKLTVFLGKMREAIGLLFGPSRTDVQGDLGTYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315285_100619906	3300031885	Sediment	VVEKLTVFLGKMREAIGLLFGPSRTDVQGDLGTYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315285_104685991	3300031885	Sediment	LQLGVTKGRQTVARKLAVFLAKIREDIRLLFARSRADVQEDLGAHWAALNILVMRGDLDPTTPIPIGDHDGNGFAGFMSLQAILRIVQDGWGRWDRKTEARWCQILVEASRDLPRKEIDLRREP
Ga0214473_100831894	3300031949	Soil	LYVTEPPSAATLQPKDATSTRRQAPSNRPGEGGQQVVPRLSVLFNKIREGIGLLCSPSRADVQEDLGAYWAALNILVMRGDLDPSTRIPVGDPRGGGFTGFMSLRAILRAVQDGWGRWDRKTEARWCQILEEASVQLLPLEADLTREP
Ga0214473_102720423	3300031949	Soil	VARRLAVFLRRIRRSIRLPFGPSRADVQGDLGAYWAALNIFVMRGDVDPLTPIPVGDHSGRGFAGFMSLQAVLRTVQDGWGRWDRKTEARWCEILAEVSRNLLHKDAGLNCEP
Ga0214473_103595472	3300031949	Soil	MEQASPNRPGEGRQQVVRRLAVLFGKIREGIVLSFARSRADVQEDLGAYWAALNILVMRGDLDPSALIPVGDHRGGGFAGFMSLRAILRTVQDGWGRWDRKTEARWCQILEEASVRLLPQEADLTRER
Ga0214473_106603582	3300031949	Soil	VIERLTVSWGKMREAISALFGPSRADVQDDLGAYWAALNILVMRGDLDPSTPIPVGDQRGNGFAGIMSLQAVLRTVQGGWGRWDRKTEARWCQILAEASENLLYEAHELNCEP
Ga0214473_107432771	3300031949	Soil	VVPRLSVLFGKIREGVVLLCSPSRADVREDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGSMSLQAILRTVQSGWGRWDRKTEARWCQILEQASVQLLPLDADLSCER
Ga0214473_111974162	3300031949	Soil	PPQPTFYSLFTVLHVTPTPPPATLQPKDAMEQASSNRPGEGGQQVVPRLSVLFGKIREGIGLLCSPSRADVQEDLGAYWAALNILVMRGDLDPSTRIPVGDPRGGGFAGFMSLQVILRAVQDGWGRWDRKTEARWCKILEETSVQLLPQEADLTREP
Ga0315294_104793022	3300031952	Sediment	VVEKLTVFLGKMREAIGLLFGPSRTDVQGDLGAYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315274_106048083	3300031999	Sediment	VQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRVILRAVQDGWGRWDRKTEARWCQILEEVSVQLLPQEADLTREP
Ga0315284_101385411	3300032053	Sediment	VVPRLSVLFGKIREGIGQRFAPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRVILRAVQDGWGRWDRKTEARWCQILEEVSVQLLPQEADLTREP
Ga0315284_103556573	3300032053	Sediment	VVRRLATFFRRIREDIELLFGLSRAEVQEDLGVYWAALDILMTRGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWRQILVDASQRLLYEETYLSREP
Ga0315279_106612171	3300032070	Sediment	VVRRLAAFLGKVREDVELLFGLSRAEVQEDLGVYWAALNILVMRGELDPTTPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVEASQNLLREETYLSREA
Ga0315295_101189253	3300032156	Sediment	VVPRLSVLFGKIREGIGQRFAPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRAILRAVQDGWGRWDRKTEARWCKILEETSLQLLPQEADLTRGP
Ga0315295_121000092	3300032156	Sediment	LLFARSRADVQEDLGAHWAALNILVMRGDLDPTTPIPIGYPDGNGFAGFMSLQAILRIVQDGWGRWDRKTEARWCQILVEASRDLPRKEIDLRREP
Ga0315268_125230761	3300032173	Sediment	RKLAVFFASTRETIGLVFGRSRADMQEELSAYWAALNILVMRGDLDGSTPIPVGDHRGAGFSGFMSLRAVLRTVQSGWGRWDRKTEARWYQILQKASRNLLHEDAGLSCEL
Ga0315276_107737092	3300032177	Sediment	VIEKLTVFLGKMREAIGLLFGPSRTDVQGDLGAYWAALNILVMRGDLDPSTPIPVGDHRGRGFAGIMSLQAVLRAVQAGWGRWDRKTEARWCQILAETSENLLYETHELNCEP
Ga0315286_100260124	3300032342	Sediment	VIEKLTVFLGKMREAIGLLFGPSRTDVQGDLGAYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315286_121645692	3300032342	Sediment	GPSRTDVQGDLGAYWAALNILVMRGDLDPSTPIPVGDHRGRGFAGIMSLQAVLRAVQAGWGRWDRKTEARWCQILAETSENLLYETHELNCEP
Ga0315275_123018901	3300032401	Sediment	KGQRVVEKLTVFLGKMREAIGLLFGPSRTDVQGDLGTYWAALNILVMRGDLDPSTPIPVGDHRGGGFAGIMSLQAILRTVQDGWGRWDRKTEARWCQILAETSENLLREDASLSCEPW
Ga0315273_103751422	3300032516	Sediment	VVRKLTAFLDKIKGGIALPFSRSRADVQSDLGAYWAALNIYVVRGEVDPTALIPIGYHDGRGFAGFMSLHAVLRTVQDGWGRWDRKTEARWCQILEEASRNLLCKETDLTWER
Ga0316622_1004739581	3300033416	Soil	VLRRLAAFLSKIREDIEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDHRGNGFTGVMSVQAVLRTVQSGWGRWDRKTEARWRRILVDASERLLYEDAPLSREL
Ga0316622_1009413791	3300033416	Soil	AEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRQILVDASQRLLCEEPHLSREP
Ga0316622_1016477522	3300033416	Soil	VIRRLATFFRKIREDIELLFGLSRAEVQEDLGVYWAALDILVARGELDPTTPIPVGDHRGNGFAGFMSLQAVLRTVQNGWGRWDRKTEARWHRILVEASERLLYEEPHVSR
Ga0316622_1026267472	3300033416	Soil	TFFRRIREDTELLFGLSRAEVQEDLGVYWAALNILVTRGELDPATPVPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRKILVDASERLLYEEPHVSREA
Ga0326726_124304882	3300033433	Peat Soil	SLPFARSRADVQEDLGAYWAALNILMMRGDLDPATLIPVGDHTGSGFAGFMSLQVVLRTVQGGWGRWDRKTEARWRRILVDASQRLLCEETYLSREP
Ga0316620_108594231	3300033480	Soil	GRQQVIRKLPVFFRKIREDIELLFGLSRAEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRQILVDASQRLLCEEPHLSREP
Ga0316620_109169511	3300033480	Soil	VLRRLAAFLSKIREDIEVLFGLSRAKVQEDLGVYWAALNILVTRGELDPATPILVGDPRGNGFTGVMSVQAVLRTVQNGWGRWDRKTEARWRRILVDASQRLLCEETY
Ga0316620_121614881	3300033480	Soil	VVRRLSAFLGKIREDIEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDHRGNGFTGVMSVQAVLRTVQSGWGRWDRKTEARWRRILVDASERLLYEDAPLSREL
Ga0316626_119528162	3300033485	Soil	REDIELLFGLSRAEVQEDLGVYWAALNILVARGELDPATPIPVGDHRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRQILVDASQRLLCEEPHLSREP
Ga0316624_102267603	3300033486	Soil	VLRRLAAFLSKIREDIEVLFGLSRAKVQEDLGVYWAALNILVTRGELDPATPILVGDPRGNGFTGVMSVQAVLRTVQSGWGRWDRKTEARWRRILVEASERLLYEDTSVSREL
Ga0316624_106321132	3300033486	Soil	VLRRLAAFLSKIREDIEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDPRGNGFAGFMSVQAVLRTVQSGWGRWDRKTEARWRRILVEASERLLYEEPRLSREL
Ga0316624_117679752	3300033486	Soil	NRPGEGRQQVLRRLAAFLGKVREDIEILFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDNRGNGFTGVMSVQAVLRTVQNGWGRWDRKTEARWRRILVDASQRLLCEETYLSREP
Ga0299912_100816191	3300033489	Soil	VVPRLSVLFGKIRERIELLCSPSRADVQEDLGAYWAALNILMMRGDLDASTLIPVGDPRGGGFAGVMSLRVVLRTVQDGWGRWDRKTEARWCKILEKASVQLLPQEADLTRGP
Ga0299912_101357722	3300033489	Soil	MGAASGRQAVVRKLAVFLADMREAIGLLFRRSRADVQEELGAYWAALNILVMRGDLDASTPIPVGDHREGGFAGFMSLRAVLRMVQDGWGRWDRKTEARWCQILEDASRDLLREHTDLTCER
Ga0299912_104790681	3300033489	Soil	QVFRKLAVFLRMIKRDIGPLFGPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRAILRAVQDGWGRWDRKTEARWCQILEKASVQLLPQEADLTRGP
Ga0299912_106301832	3300033489	Soil	VIERLTVSWGKMREAIGALFGPSRADVQDDLGAYWAALNILVMRGDLDPSTPIPVGDHRGNGFAGIMSLQAVLRAVQGGWGRWDRKTEARWCQILAETSENLLYETHELNCEP
Ga0299912_109135231	3300033489	Soil	SRGVKMGAASQSQAVVRKLAILFTDMRDAVGMMFGRSRADVQEELGAYWAALNILMARGDLDASTPIAVGDHREGGFAGFMSLRNLLRIVQDGWGRWDRKTEARWCQILEDASRDLLREHTDLTIER
Ga0299912_113292951	3300033489	Soil	MGAAIGRQAAFRRLTSFFADMKETIGRLFGRSRADVQEELGAYWAALNILVMRGDLDGSAPIMVGDQRGGGFAGVMSLRAVLRTVQDGWGRWDRKTEARWCQILEDASRNLLHEDAFA
Ga0316628_1005698892	3300033513	Soil	VLRRLAGFFGKIREDVEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDPRGNGFSGFMSVQAVLRTVQNGWGRWDRKTEARWRRILVEASERLLYEDTPVSREP
Ga0316628_1012773151	3300033513	Soil	VVRRLSAFLGKIREDIEVLFGLSRAEVQEDLGVYWAALNILVTRGELDPTTPILVGDHRGNGFTGVMSVQAVLRTVQNGWGRWDRKTEARWRRILVDASERLLYEDAPLSREL
Ga0316628_1013230981	3300033513	Soil	VIRKLTVFVGKIRDDIELLFGLSRAEVQEDLGVYWAALNILVARGEIDPATPIPVGDHRGNGFAGIMSVQAVLRTVQNGWGRWDRKTEARWRRILMEASERLLYEETPLNREP
Ga0316628_1027733442	3300033513	Soil	RLSAFLGKIREDVELLFGLSRAEVQEDLGVYWAALNILVTRGELDPNTPILVGDNRGNGFTGVMSVQAVLRTVQNGWGRWDRKTEARWRRILVDASQRLLCEETYLSREP
Ga0373911_023857_646_999	3300034081	Sediment Slurry	AIGRQAVVRGLTTFFANETETIGTFFGRSRADVQEDLGAYWAALNILVMRGDLDGSTPISVGDRRGGGFAGIMSLRAVLRAVQDGWGRWDRKTEARWCQILEDASRTLLYEDATLRS
Ga0373901_152452_74_415	3300034083	Sediment Slurry	VVPRLSVLFGKIREGIGQRFAPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRAILRAVQDGWGRWDRKTEARWCQILEEASVQLLPQEADLTRGP
Ga0373908_032017_493_855	3300034085	Sediment Slurry	MGAAIGRQAVVRGLTTFFANVTETIGTFFGRSRADVQEDLGAYWAALNILVMRGDLDGSTPISVGDRRGGGFAGIMSLRAVLRAVQDGWGRWDRKTEARWCQILEDASRTLLYEDATLRS
Ga0373913_0093374_92_433	3300034089	Sediment Slurry	VVPRLSVLFGKIREGIGQRFAPSRADVQEDLGAYWAALNILMMRGDLDPSTRIPVGDPRGGGFAGFMSLRAILRAVQDGWGRWDRKTEARWCQILEEASVQLLPQEADLTREP
Ga0373913_0207043_1_264	3300034089	Sediment Slurry	VQEDLGLHWAALNIYLMRGDLDPLTPIPVGDDHGRGFAGFMSVQAVLRVVQDGWGRWDRKTEARWCQILAEASRNLLRKETNLSREP
Ga0373910_0105076_24_287	3300034100	Sediment Slurry	VQSDLGAYWAALNIYVVRGEVDPTTPIPVGDHDGNGFAGFMSLRAVLRTVQDGWGRWDRKTEARWCQILEETSRNLLSKDADLTCWP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078880

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences