Basic Information | |
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Family ID | F078814 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 47 residues |
Representative Sequence | KDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Number of Associated Samples | 105 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 98.28 % |
% of genes from short scaffolds (< 2000 bps) | 95.69 % |
Associated GOLD sequencing projects | 98 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (82.759 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (31.034 % of family members) |
Environment Ontology (ENVO) | Unclassified (84.483 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (87.069 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 63.04% β-sheet: 0.00% Coil/Unstructured: 36.96% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Seawater Marine Surface Seawater Marine Marine Seawater Aqueous Seawater Marine Marine Seawater Estuarine Marine Marine Estuarine Pelagic Marine Seawater Pelagic Marine Marine Seawater Deep Subsurface Saline Water |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_101339561 | 3300000101 | Marine | FKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSSIEDYFDNEILS* |
DelMOSum2011_101183013 | 3300000115 | Marine | EIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
DelMOSpr2010_101508091 | 3300000116 | Marine | LLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
DelMOSpr2010_102473232 | 3300000116 | Marine | AVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
LPaug09P1610mDRAFT_10179223 | 3300000149 | Marine | VKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
LPaug09P1610mDRAFT_10241821 | 3300000149 | Marine | LLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
LPaug08P2610mDRAFT_10227703 | 3300000159 | Marine | KDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
LPjun09P1210mDRAFT_10047904 | 3300000168 | Marine | TLLGNTKGEIITKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
LP_F_10_SI03_100DRAFT_10482413 | 3300000257 | Marine | LGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
LPaug09P202000mDRAFT_10371781 | 3300000323 | Marine | KDIFTMLDNTKGEIISKIDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
JGI20153J14318_101206883 | 3300001351 | Pelagic Marine | VKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
JGI24006J15134_101974461 | 3300001450 | Marine | KRAVKDVFIMINNIKGDDLIKKIDGIVKQVAKKRNVKVSNIEDYFDNEIIN* |
JGI24006J15134_102010291 | 3300001450 | Marine | KQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
JGI24004J15324_101199931 | 3300001472 | Marine | VKDVFTLLGNTKGEIITKVDSIIKQVAKKRSVKVSSIEDYFDNEILK* |
JGI24005J15628_102038372 | 3300001589 | Marine | LGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
GOS2222_10050543 | 3300001940 | Marine | ERQAVKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0066605_101971601 | 3300004279 | Marine | QAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0066224_10850191 | 3300004457 | Marine | KQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
Ga0066854_100048858 | 3300005431 | Marine | DNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0066837_102694802 | 3300005593 | Marine | FKKLSPAEKRAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0066840_101028271 | 3300005608 | Marine | VKDIYVMLDKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS* |
Ga0068500_12397223 | 3300006332 | Marine | IGKTKGDIISKIDGIIKQVARKRNVKVSRIEDYIDNEILS* |
Ga0068480_11240173 | 3300006335 | Marine | RAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0098037_12337781 | 3300006737 | Marine | TKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
Ga0098048_12155391 | 3300006752 | Marine | DIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS* |
Ga0066376_103788771 | 3300006900 | Marine | KKLSPAAKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEKLN* |
Ga0102819_10915612 | 3300007553 | Estuarine | GEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN* |
Ga0102816_10972071 | 3300008999 | Estuarine | GEIITKVDSIIKQVAKKRNVKISSIEDYFDNEILN* |
Ga0102829_10706464 | 3300009026 | Estuarine | VFTLLGNTKGEIITKVDSIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0102854_12031852 | 3300009058 | Estuarine | KGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILN* |
Ga0115552_12309941 | 3300009077 | Pelagic Marine | DVFTLLGNTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN* |
Ga0114995_104357603 | 3300009172 | Marine | AVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0114996_107756571 | 3300009173 | Marine | NIKGDDLITKIDGIVKQVAKKRNVKVSNIEDYFDNEIIN* |
Ga0114996_111071152 | 3300009173 | Marine | EKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0115005_102139271 | 3300009432 | Marine | PAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKISSIEDYFDNEILN* |
Ga0115005_108054681 | 3300009432 | Marine | PAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILK* |
Ga0115561_11033191 | 3300009440 | Pelagic Marine | KGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
Ga0115007_104339141 | 3300009441 | Marine | TKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN* |
Ga0115554_11723071 | 3300009472 | Pelagic Marine | VFTLLGNTKGEIITKVDSIIKQVAKKRNVKVSAIEDYFDNEILK* |
Ga0115555_13101201 | 3300009476 | Pelagic Marine | EIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN* |
Ga0115572_103498963 | 3300009507 | Pelagic Marine | TKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN* |
Ga0115000_106859481 | 3300009705 | Marine | LSPAEKQAVKDVFTLLGNTKGEIITKVDSIIKQVSKKRNVKVSAIEDYFDNEILK* |
Ga0115001_106241071 | 3300009785 | Marine | LSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN* |
Ga0114934_1000501612 | 3300011013 | Deep Subsurface | KKLSPAEKMAVKDIYAMLGKTKGDIISKIDGIIKQVARKRNVKVSSIEDYIDNEILS* |
Ga0163179_102406711 | 3300012953 | Seawater | DVFTLLGNTKGEIISKVDGIIKQVAKKYKVKVSRIEDYVDNEILS* |
Ga0163111_104910811 | 3300012954 | Surface Seawater | DVFTMLGNTKGEIISKIEGIIKQVAKKRNVKVSAIEDYFDNEILS* |
Ga0134299_10585362 | 3300014959 | Marine | VKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS* |
Ga0181391_11401022 | 3300017713 | Seawater | EFKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIVKQVAKKRNVKVSAIEDYFDNEILS |
Ga0181412_10967561 | 3300017714 | Seawater | ETAEFKKLSPAQKQAVKDVFTLLGKTEVETIGNGDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0181381_11309312 | 3300017726 | Seawater | LGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0181397_11947321 | 3300017744 | Seawater | TKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0181385_11498673 | 3300017764 | Seawater | FTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0181425_12522391 | 3300017771 | Seawater | KGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0181395_12829181 | 3300017779 | Seawater | EKQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0206131_102256263 | 3300020185 | Seawater | QAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS |
Ga0211478_1032202 | 3300020237 | Marine | AEKQAVKDVFTMLGNTKGEIISKIDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0211685_10234803 | 3300020253 | Marine | KKLSPAAKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEILN |
Ga0211690_11018051 | 3300020335 | Marine | AVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0211510_10376544 | 3300020336 | Marine | TKGDIISKIDGIIKQVARKRNVKVSSIEDYIDNEILS |
Ga0211605_10616831 | 3300020339 | Marine | YSMIGKTKGDIISKIDGIIKQVARKRNVKVSRIEDYIDNEILS |
Ga0211687_101503201 | 3300020396 | Marine | ETAEYKKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0211528_101436351 | 3300020417 | Marine | DIYTMIGKTKGDIISKIDSIIKQVAKKRNIKVSRIEDYIDNEILS |
Ga0211525_101131751 | 3300020423 | Marine | SPAEKRAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0211549_104683021 | 3300020425 | Marine | KKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0211642_104129562 | 3300020449 | Marine | SEKMAVKDIYTMLGKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS |
Ga0211545_101001371 | 3300020452 | Marine | FTLLGNTKGEIISKVDGIIKQVAKKYKVKVSRIEDYVDNEILS |
Ga0211545_102133221 | 3300020452 | Marine | FTLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS |
Ga0211475_105676681 | 3300020468 | Marine | TLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS |
Ga0206691_18399283 | 3300021342 | Seawater | AVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0212022_10098884 | 3300022164 | Aqueous | AEFKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
(restricted) Ga0233426_101058561 | 3300022920 | Seawater | TKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
(restricted) Ga0233426_102846162 | 3300022920 | Seawater | FTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0222664_10421671 | 3300023296 | Saline Water | GNTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN |
Ga0228653_10946772 | 3300024237 | Seawater | KDVFTMLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
(restricted) Ga0233438_100637615 | 3300024255 | Seawater | FKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
(restricted) Ga0233444_102372053 | 3300024264 | Seawater | VFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
(restricted) Ga0233448_10544981 | 3300024299 | Seawater | FKKLSPAEKQAVKDVFTMLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
(restricted) Ga0233447_11127483 | 3300024336 | Seawater | GNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0244775_108200121 | 3300024346 | Estuarine | SPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN |
Ga0244775_109005261 | 3300024346 | Estuarine | YNKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0209535_11324731 | 3300025120 | Marine | TLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0209336_101039603 | 3300025137 | Marine | VKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSDIEDYFDNEILN |
Ga0209634_10178778 | 3300025138 | Marine | FKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0209634_11283194 | 3300025138 | Marine | KLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSSIEDYFDNEILN |
Ga0208148_10599041 | 3300025508 | Aqueous | KDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0208660_10519014 | 3300025570 | Aqueous | FTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0209716_11551042 | 3300025626 | Pelagic Marine | LSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN |
Ga0209197_11201183 | 3300025637 | Pelagic Marine | KDVFTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0208643_10798831 | 3300025645 | Aqueous | EFKKLSPAERQAVKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0208134_10444161 | 3300025652 | Aqueous | KGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0209632_101759091 | 3300025886 | Pelagic Marine | TKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0208879_10961434 | 3300026253 | Marine | FTMLDNTKGEIISKIDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0207993_10946443 | 3300026270 | Marine | VKDIYTMLGKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS |
Ga0208948_10618321 | 3300027501 | Marine | RQAVKDVFTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0208947_11366941 | 3300027553 | Marine | KDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0209482_10773071 | 3300027668 | Marine | GNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEKLN |
Ga0209554_10610364 | 3300027685 | Marine | TKGEIISKIDSIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0209192_101297774 | 3300027752 | Marine | VKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0209192_102858501 | 3300027752 | Marine | GNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0209192_103673832 | 3300027752 | Marine | KDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0209709_101184125 | 3300027779 | Marine | KLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKISSIEDYFDNEILN |
Ga0209502_102331801 | 3300027780 | Marine | KDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0209359_105428402 | 3300027830 | Marine | KGNIISKIDGIIKQVAKKRNIKVSRIEDYIDNEILS |
Ga0209501_102953883 | 3300027844 | Marine | KLSPAEKQAVKDVFTLLGNTKGEIITKVDSIIKQVAKKRNVKISSIEDYFDNEILN |
Ga0257114_10124611 | 3300028196 | Marine | AEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0257132_10062023 | 3300028671 | Marine | VEYKKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN |
Ga0183755_10561381 | 3300029448 | Marine | TLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0257131_1064152 | 3300029637 | Marine | VKDVFTLLGNTKGEIITKVDSIIKQVAKKRSVKVSSIEDYFDNEILK |
Ga0183757_10612792 | 3300029787 | Marine | IYTMLNKTKGNIISKIDGIIKQVAKKRNIKVSKIEDYIDNEILS |
Ga0308127_10467912 | 3300030715 | Marine | VKDIFAMLGNTKGDIISKIDGIIKQVAKKRNIKVSSIEDYFDNEILN |
Ga0308025_12907782 | 3300031143 | Marine | TKGDIISKIDGIIKQVAKKRNIKVSSIEDYFDNEILN |
Ga0302116_11391011 | 3300031597 | Marine | KLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN |
Ga0308001_101099181 | 3300031644 | Marine | PAAKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSDIEDYFDNEILN |
Ga0307986_103781671 | 3300031659 | Marine | GEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEILN |
Ga0315326_109500751 | 3300031775 | Seawater | KQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS |
Ga0315321_107749231 | 3300032088 | Seawater | TAEFKKLSPAERQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSSIEDFFDNEIL |
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