NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F078796

Metagenome / Metatranscriptome Family F078796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078796
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 44 residues
Representative Sequence VWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA
Number of Associated Samples 112
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 12.93 %
% of genes near scaffold ends (potentially truncated) 96.55 %
% of genes from short scaffolds (< 2000 bps) 94.83 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (64.655 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(14.655 % of family members)
Environment Ontology (ENVO) Unclassified
(16.379 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.517 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76
1Ga0062386_1011640362
2Ga0062388_1026339161
3Ga0066683_107606052
4Ga0066679_102981612
5Ga0066688_107725112
6Ga0066684_108347861
7Ga0070710_108077562
8Ga0070710_114311921
9Ga0066689_108253661
10Ga0066695_103685531
11Ga0066695_105950442
12Ga0066694_103388801
13Ga0070762_112648922
14Ga0070766_109014282
15Ga0070717_111968981
16Ga0075026_1007987231
17Ga0075017_1006836942
18Ga0075021_109224171
19Ga0066658_102168283
20Ga0075520_11351962
21Ga0075419_105713912
22Ga0075435_1000885891
23Ga0099793_106109282
24Ga0099794_104804312
25Ga0099795_100303523
26Ga0099829_112619022
27Ga0066709_1028872582
28Ga0105248_111564971
29Ga0105248_113231242
30Ga0116221_13296011
31Ga0116102_11571102
32Ga0116112_10195904
33Ga0116121_12273332
34Ga0116215_15482111
35Ga0116224_106150892
36Ga0116130_11922982
37Ga0116223_108593292
38Ga0127483_12780192
39Ga0134064_100641913
40Ga0134063_102479871
41Ga0074046_102680871
42Ga0074044_109577482
43Ga0126381_1050669651
44Ga0126383_110703831
45Ga0138505_1000006531
46Ga0138513_1000634081
47Ga0137389_106264701
48Ga0137388_117411202
49Ga0137384_106968392
50Ga0137360_114843682
51Ga0137390_109937731
52Ga0137373_106367362
53Ga0137394_105387651
54Ga0137359_100977031
55Ga0137413_109625301
56Ga0137404_121621182
57Ga0162652_1000923671
58Ga0164300_111725911
59Ga0164298_109242591
60Ga0164306_107724602
61Ga0163162_112292001
62Ga0163162_115178562
63Ga0181521_100342247
64Ga0181530_105424641
65Ga0163163_129003351
66Ga0187802_104085561
67Ga0187803_100349491
68Ga0187819_108711602
69Ga0187767_100260631
70Ga0187804_101227981
71Ga0184605_103919141
72Ga0184608_102402992
73Ga0187858_107689251
74Ga0184629_103759532
75Ga0066655_103818833
76Ga0190274_138495311
77Ga0210389_111744331
78Ga0210402_112245861
79Ga0209171_103810871
80Ga0207692_109376032
81Ga0209240_11678431
82Ga0209801_11983971
83Ga0209375_13012911
84Ga0257171_10480702
85Ga0257181_10390611
86Ga0209588_10739872
87Ga0209446_10848101
88Ga0209139_101564802
89Ga0209283_104260401
90Ga0209069_105800551
91Ga0137415_102208094
92Ga0302231_103189431
93Ga0302225_100071421
94Ga0302226_104307042
95Ga0307302_104214581
96Ga0246001_10337392
97Ga0316363_103165081
98Ga0308152_1027222
99Ga0075386_100059652
100Ga0308178_11282521
101Ga0308151_10279021
102Ga0307498_102204011
103Ga0170820_144796562
104Ga0306917_104837871
105Ga0307469_113723931
106Ga0318493_104902341
107Ga0318501_104658241
108Ga0307477_105462621
109Ga0318508_11706261
110Ga0307478_104378572
111Ga0310884_104693801
112Ga0306922_111510161
113Ga0318559_103735872
114Ga0318549_103531461
115Ga0310914_108186011
116Ga0334790_182823_482_610
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.28%    β-sheet: 0.00%    Coil/Unstructured: 50.72%
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Variant

510152025303540VWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
64.7%35.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Peatlands Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Peat
Soil
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
3.4%3.4%3.4%3.4%7.8%14.7%4.3%9.5%9.5%3.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062386_10116403623300004152Bog Forest SoilVISIGIAHIEVNVGMILRRFISNALELAAASAHDRQPDFIMKLRIPFHLYRA
Ga0062388_10263391613300004635Bog Forest SoilDDLIGIAHIEVDVWVILRRQSANALQLAAANADDRHADFIVKLRITLPVQFNLTH*
Ga0066683_1076060523300005172SoilDVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRAA*
Ga0066679_1029816123300005176SoilVWVILRWFIPNALELAAANAHDRYPDFIMKLRITFHLQRVA*
Ga0066688_1077251123300005178SoilVWVILRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRVA*
Ga0066684_1083478613300005179SoilDVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRTA*
Ga0070710_1080775623300005437Corn, Switchgrass And Miscanthus RhizosphereVILRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0070710_1143119213300005437Corn, Switchgrass And Miscanthus RhizosphereEVDVWVILRRFIPNALELAAANAHDRHPDFIMKRRITFHLQYAA*
Ga0066689_1082536613300005447SoilRAIGADDLTGIAHIEVDVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA*
Ga0066695_1036855313300005553SoilEIDVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRTA*
Ga0066695_1059504423300005553SoilLEVDVWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0066694_1033888013300005574SoilTGIAHIEVDVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA*
Ga0070762_1126489223300005602SoilSPNALKLAAANADDRHSDFIVKLRITLHLRQFNLTQ*
Ga0070766_1090142823300005921SoilDVWVILRRFIPNALELAAANAHDRHPDFIMKFRITFHLQRAA*
Ga0070717_1119689813300006028Corn, Switchgrass And Miscanthus RhizosphereHIEIDVRVILRRLVSNALELAAAYAHDRHPDFIMKLRITFHLQRALRRPIVDV*
Ga0075026_10079872313300006057WatershedsLASPVEVDVWVIFRRHSPNALKLAAANADDRHPDFIVKLRITLHLQ
Ga0075017_10068369423300006059WatershedsVWVIFRRHSPNALKLAAANADDRHPDFIVKLRITLHLQRAV*
Ga0075021_1092241713300006354WatershedsVLRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0066658_1021682833300006794SoilRFIPNALELAAANAHDRHPDFIMKLRITFHLLRAA*
Ga0075520_113519623300006795Arctic Peat SoilDDLTGIAYLEVDVWVILRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0075419_1057139123300006969Populus RhizosphereMWVILRRLSPNALELTAATAHDRHPDFIMKLRITFHLQR
Ga0075435_10008858913300007076Populus RhizosphereMWVILRRLVPNALELTAANAHDRHPDFIMKLRITFHL
Ga0099793_1061092823300007258Vadose Zone SoilRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0099794_1048043123300007265Vadose Zone SoilAYLEVDVWVILRRFIPNALELAAANAHDRHPDFIMKLRIPFHLQRAA*
Ga0099795_1003035233300007788Vadose Zone SoilMGAEDLTGIAHIEIDVRVILRRLVSNALELAAAYAHDRHPDFIMKLRITFHLQRAA*
Ga0099829_1126190223300009038Vadose Zone SoilWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA*
Ga0066709_10288725823300009137Grasslands SoilDVWVILRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRVA*
Ga0105248_1115649713300009177Switchgrass RhizosphereIAHIEVDVWVILRWLIPNALELTAANSHDRHPDFIMKLRITFHLQPPA*
Ga0105248_1132312423300009177Switchgrass RhizosphereGADNLTGIAYLEVDVWVILRRFIPNALELAAANAHDRHPDFIKKRRITFHLQRAA*
Ga0116221_132960113300009523Peatlands SoilLRRLSPNAFKLAAADADDRHPNFIVKLRIILHLQRAG*
Ga0116102_115711023300009632PeatlandVWVILRRLSPNALKLAAANADDRHPNFIVKLRITLHHNGARH
Ga0116112_101959043300009636PeatlandVWVIFRRPSPNAFKLAAANADDRHPNFIVKLRITLHHNGARHSLAK
Ga0116121_122733323300009644PeatlandRRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA*
Ga0116215_154821113300009672Peatlands SoilIGANDLTRIAHMEVNVWVILRRFIANALELATANAHDRRPNFIMKLRIIFHLQLVA*
Ga0116224_1061508923300009683Peatlands SoilRRYSPNALELAAANADDRHSDFIVKLRITLHLQQFNLTH*
Ga0116130_119229823300009762PeatlandVAHIEVDVWVILRRLSPNALKFAAANADDRHPDFIVKLWITLHQQRAA*
Ga0116223_1085932923300009839Peatlands SoilDVRVILRRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA*
Ga0127483_127801923300010142Grasslands SoilGIAYLEIDVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRTA*
Ga0134064_1006419133300010325Grasslands SoilFIPNALELAAANAHDRHPDFIMKLRITFHLLRAA*
Ga0134063_1024798713300010335Grasslands SoilGIAHIEVDVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA*
Ga0074046_1026808713300010339Bog Forest SoilHIEVDVWVILRRFVPNALELAAADAHDRHPDLIMKLRITFHLQLAAWPPDR*
Ga0074044_1095774823300010343Bog Forest SoilGIAHIEVDVWVILRRHSPNALEITAANADDRHPNFIVKLRINLHLQQFNQ*
Ga0126381_10506696513300010376Tropical Forest SoilVGVILWRLIPDALELAAANAHDRHPDFIMKRRITFHLQRAA*
Ga0126383_1107038313300010398Tropical Forest SoilGIAHIEVDVWVILRWSIPNALELAAANAHDRHPDFIMKLRTTFHLQRAA*
Ga0138505_10000065313300010999SoilVDVWVILRRFIPNALELAAANAHDRDPDFIMKLRVTFHLQRAAYAPER*
Ga0138513_10006340813300011000SoilVWVILRRLIPNALELAAANPHDRYPDFIMKLRIAFHLQRAA*
Ga0137389_1062647013300012096Vadose Zone SoilVWVILRRFIPNALELAAANAHDRHPDFIMKLQSAA*
Ga0137388_1174112023300012189Vadose Zone SoilVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRAA*
Ga0137384_1069683923300012357Vadose Zone SoilVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA*
Ga0137360_1148436823300012361Vadose Zone SoilVRVILRRLVSNALELAAAYAHDRHPDFIMKLRITFHLQRALRRPIVDV*
Ga0137390_1099377313300012363Vadose Zone SoilLTGSADLEVDVWVILRRFIPNALELAAANAHDRHPGFIMKRWITFHLQRAA*
Ga0137373_1063673623300012532Vadose Zone SoilALELAAANAHDRHPDFIVKRWITFHLQRAAWAPDQ*
Ga0137394_1053876513300012922Vadose Zone SoilQGSPAYLEVDVWVILRWFIPNALELAAANAHERHPDFIMKLRITFHLQRAA*
Ga0137359_1009770313300012923Vadose Zone SoilAVSNALELAAAYAHDRHPDFIMKLRITFHLQRVLRRPIVDV*
Ga0137413_1096253013300012924Vadose Zone SoilDLTGIAYLEVDVWVILRRFIPNALELVAANAHHRHPDFIMKLWITFHLQRAA*
Ga0137404_1216211823300012929Vadose Zone SoilGIADLEVDVWVILRWFIPNALELAAANANDRHPDFIMELRITFHLQRAA*
Ga0162652_10009236713300012941SoilVGHLAAVSPNTLELAAANAHDRHPDFIMKRRITFHL
Ga0164300_1117259113300012951SoilYSPNALKLAAANADDRHSDFIVKLRITLHLQQFNLTH*
Ga0164298_1092425913300012955SoilIGAADLTSIAHIEVDVWVILRRFIPNALELAAANAHDRDPDFIMKLRVTFHLQRAAYAPER*
Ga0164306_1077246023300012988SoilDMWVILRRLIPNALELTAANAHDRHPDFIMKLRISFHLQRAAQAR*
Ga0163162_1122920013300013306Switchgrass RhizosphereFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA*
Ga0163162_1151785623300013306Switchgrass RhizosphereGIAHLEVDVWVILRRFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA*
Ga0181521_1003422473300014158BogVILRRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA*
Ga0181530_1054246413300014159BogRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA*
Ga0163163_1290033513300014325Switchgrass RhizosphereVWVILRRFIPNALELAAANAHDRQPDFIMKRRISFHLQRAA*
Ga0187802_1040855613300017822Freshwater SedimentDLTGVPHIEVDVWVILRRLSPNALELAAATADDRRPNFIVKLRPQDE
Ga0187803_1003494913300017934Freshwater SedimentGVAHLEVDVWVLLRRLSPNALELAAATADDRHPNFIVKLRPQDE
Ga0187819_1087116023300017943Freshwater SedimentVWVILRRLSPNALKLAAANADDRHPNFIVKLRITLHL
Ga0187767_1002606313300017999Tropical PeatlandHCSEIEVDVWVILRRLSPNALKLAAANADDRYPNFIVKLR
Ga0187804_1012279813300018006Freshwater SedimentMEVDVWVILRRFIANALELATANAHDRRPDFIMKLRIL
Ga0184605_1039191413300018027Groundwater SedimentVWVILRRLIPNALELAAANAHDRHPNFIMKLRIAFHLQRAA
Ga0184608_1024029923300018028Groundwater SedimentILRRFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0187858_1076892513300018057PeatlandRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA
Ga0184629_1037595323300018084Groundwater SedimentADDLTGIAYLEIDVWVILRRFIPNALELAAANAHDWHPDFIMKRRITFHLQRAA
Ga0066655_1038188333300018431Grasslands SoilRRAIGADDLTGIAHIEVDVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA
Ga0190274_1384953113300018476SoilAYLEIDVWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA
Ga0210389_1117443313300021404SoilRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA
Ga0210402_1122458613300021478SoilYSPNALKLAAANADDRHSDFIVKLRITLHLQQFNLTH
Ga0209171_1038108713300025320Iron-Sulfur Acid SpringADDSTRIAHIEVDVWVILRRHSPNALKLAAANADDRHSDFIVKLRITLHLQQFDLTH
Ga0207692_1093760323300025898Corn, Switchgrass And Miscanthus RhizosphereMDHLEVDVWVILRRFIPDALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0209240_116784313300026304Grasslands SoilVGDLAVFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0209801_119839713300026326SoilDLTGIAYLEIDVWVILRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRTA
Ga0209375_130129113300026329SoilVWVILRRLIPNALELAAANAHDRHPDFIMKLRVTFHLQRAA
Ga0257171_104807023300026377SoilVWVILRWFIPNALELATANAHDRHPDFIMKLRITFHLQRAA
Ga0257181_103906113300026499SoilLRWFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA
Ga0209588_107398723300027671Vadose Zone SoilVWVILRRFIPNALELAAANAHDRHPDFIMKLRITFHLQRAA
Ga0209446_108481013300027698Bog Forest SoilVWVILRRQSPNALKLAAANADDRHADFIVKLRITLHLPAIQSDL
Ga0209139_1015648023300027795Bog Forest SoilVDVWVILRRFIPNALELAAANAHDRRPDFIMKLRINFHLQLAA
Ga0209283_1042604013300027875Vadose Zone SoilLRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRAA
Ga0209069_1058005513300027915WatershedsVILRWFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0137415_1022080943300028536Vadose Zone SoilEVDVWVILRRFIPNALELAAANAHDRDPDFIMKLRITFHLQRAG
Ga0302231_1031894313300028775PalsaWVILRRHSPNALELAAANADDRHPNFIVKLRITLHLQQFNQ
Ga0302225_1000714213300028780PalsaDVTGIAHVEVNVWVILRRHSPNALELAAANADDRHPNFIVKLRITLHLQQFNQ
Ga0302226_1043070423300028801PalsaVWVILRRHSPNALELAAANADDRHPNFIVKLRITLHLQQFNQ
Ga0307302_1042145813300028814SoilRFIPNTLELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0246001_103373923300029889PeatVLPSSDRKIGADDLTDVAHIEVDVRVILRRLSPNALELAAADADDRHPNFIVKLRITLHLQRAA
Ga0316363_1031650813300030659Peatlands SoilVRVILRRLSPNALKLAAANADDRHPNFIVKLRITLHLQRAA
Ga0308152_10272223300030831SoilDDLTGIAHIEVDVWMILRRFVPNALELAAANAHDRHPDSIMKLRITFHLQHAA
Ga0075386_1000596523300030916SoilMWVILRRLIPNALELTAANSHDRHPDFIMKLRITFHL
Ga0308178_112825213300030990SoilIAHIEVDVWVILRRLIPNALELTAANSHDRHPDFIMKLRITFHLQRPA
Ga0308151_102790213300031124SoilRRFISNALKLAAANAHDRHPDFIMKLRITFHLQHAA
Ga0307498_1022040113300031170SoilRRFIPNARELAAANAHDRHPDFIMKRWITFHLQRAA
Ga0170820_1447965623300031446Forest SoilWVILRRFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0306917_1048378713300031719SoilSEVDMRVILRRLFPNAFKLAAANAHDRHANFIMKLRITFHLRRAA
Ga0307469_1137239313300031720Hardwood Forest SoilRWFIPNALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0318493_1049023413300031723SoilDVDMWVILRRLSPNALKLAAANADDWHPNFIVKLRIVLHPLRAT
Ga0318501_1046582413300031736SoilVDVGVILWRLIPDALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0307477_1054626213300031753Hardwood Forest SoilRRFIPNALELAAANAHDRHPDFIMKLWITFHLQRAV
Ga0318508_117062613300031780SoilVRVILRRPVSNALELAAAYAHDRHPDFIMKLRITFHLQRALRRPIVDVPSPSL
Ga0307478_1043785723300031823Hardwood Forest SoilSKRNCVEQMGADDLTGIADLEEDVWVVLRWFIPNALELAAANAHDRHPDFIMKLRIIFHLQRAA
Ga0310884_1046938013300031944SoilVDVWVILRRLIPNALELAAANPHDRYPDFIMKLRIAFHLQRAA
Ga0306922_1115101613300032001SoilLTGIAHFKVDVGVILWRLIPDALELAAANAHDRHPDFIMKRRITFHLQRAAQAPDR
Ga0318559_1037358723300032039SoilDVGVILWRLIPDALELAAANAHDRHPDFIMKRRITFHLQRAA
Ga0318549_1035314613300032041SoilVWVILRRFIPNALELAAANAHDRHPDFIMKRWITFHLQ
Ga0310914_1081860113300033289SoilVGIAHIEVDVWVILRRLIPNALELTAANSHDRHPDFIMKLRITFHLQRPA
Ga0334790_182823_482_6103300033887SoilDVWVILQRLSPNALKLAAANADDRHPNFIVKLRINLHLQRAA


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