Metagenome Family F078772

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078772
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	61 residues
Representative Sequence	TREEEAARLEKEIAAHPVTRCEPGERNPSSSRPGWSSKPFIPLSERSVAEGIAKKMMRKA
Number of Associated Samples	99
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.00 %
% of genes near scaffold ends (potentially truncated)	81.90 %
% of genes from short scaffolds (< 2000 bps)	92.24 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.897 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.069 % of family members)
Environment Ontology (ENVO)	Unclassified (26.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.069 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.23% β-sheet: 0.00% Coil/Unstructured: 64.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00313	CSD	5.17
PF00487	FA_desaturase	4.31
PF00589	Phage_integrase	3.45
PF04314	PCuAC	2.59
PF03567	Sulfotransfer_2	1.72
PF09361	Phasin_2	1.72
PF07298	NnrU	1.72
PF00881	Nitroreductase	1.72
PF16694	Cytochrome_P460	0.86
PF13649	Methyltransf_25	0.86
PF00574	CLP_protease	0.86
PF14023	DUF4239	0.86
PF05726	Pirin_C	0.86
PF05656	DUF805	0.86
PF01566	Nramp	0.86
PF00270	DEAD	0.86
PF01165	Ribosomal_S21	0.86
PF00535	Glycos_transf_2	0.86
PF13180	PDZ_2	0.86
PF00805	Pentapeptide	0.86
PF13426	PAS_9	0.86
PF00106	adh_short	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	4.31
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	4.31
COG2847	Copper(I)-binding protein	Inorganic ion transport and metabolism [P]	2.59
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG4094	Uncharacterized membrane protein	Function unknown [S]	1.72
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.86
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.86
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.86
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.86
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.69 %
Unclassified	root	N/A	18.10 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.66 %
Unclassified	root	N/A	18.10 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	58.62 %
Unclassified	root	N/A	18.10 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	43.97 %
Unclassified	root	N/A	18.10 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	5.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.45 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.86 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.86 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	42.24 %
Unclassified	root	N/A	18.10 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.72 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.86 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.86 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.10 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.17 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.72 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.86 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.86 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	0.86 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.86 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001139\|JGI10220J13317_10736814	Not Available	505	Open in IMG/M
3300001431\|F14TB_100228847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	1785	Open in IMG/M
3300001978\|JGI24747J21853_1014269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	826	Open in IMG/M
3300003465\|P52013CM_1099127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	586	Open in IMG/M
3300004013\|Ga0055465_10087144	Not Available	912	Open in IMG/M
3300005162\|Ga0066814_10103138	Not Available	536	Open in IMG/M
3300005290\|Ga0065712_10042963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	798	Open in IMG/M
3300005332\|Ga0066388_105260839	Not Available	656	Open in IMG/M
3300005332\|Ga0066388_106098605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300005332\|Ga0066388_106614455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	584	Open in IMG/M
3300005364\|Ga0070673_100173536	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300005466\|Ga0070685_11327391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	550	Open in IMG/M
3300005539\|Ga0068853_102030358	Not Available	557	Open in IMG/M
3300005546\|Ga0070696_101907580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	515	Open in IMG/M
3300005713\|Ga0066905_102150625	Not Available	520	Open in IMG/M
3300005764\|Ga0066903_101030160	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508	Open in IMG/M
3300005764\|Ga0066903_103581452	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005764\|Ga0066903_104086898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	782	Open in IMG/M
3300005764\|Ga0066903_104946075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	707	Open in IMG/M
3300005764\|Ga0066903_108000984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	542	Open in IMG/M
3300005840\|Ga0068870_10262736	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300006358\|Ga0068871_101074368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	752	Open in IMG/M
3300006854\|Ga0075425_100303988	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300006854\|Ga0075425_101081346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	914	Open in IMG/M
3300006854\|Ga0075425_102791646	Not Available	537	Open in IMG/M
3300006854\|Ga0075425_103134335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	503	Open in IMG/M
3300006954\|Ga0079219_11637785	Not Available	592	Open in IMG/M
3300009053\|Ga0105095_10147322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1284	Open in IMG/M
3300009094\|Ga0111539_10555397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1337	Open in IMG/M
3300009094\|Ga0111539_10858920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1056	Open in IMG/M
3300009094\|Ga0111539_10866542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1051	Open in IMG/M
3300009094\|Ga0111539_12690397	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300009098\|Ga0105245_13033639	Not Available	520	Open in IMG/M
3300009101\|Ga0105247_10336138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1058	Open in IMG/M
3300009146\|Ga0105091_10355206	Not Available	723	Open in IMG/M
3300009147\|Ga0114129_11880170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	726	Open in IMG/M
3300009148\|Ga0105243_10669251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1008	Open in IMG/M
3300009148\|Ga0105243_12986723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	513	Open in IMG/M
3300009162\|Ga0075423_13085960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	510	Open in IMG/M
3300009177\|Ga0105248_10094513	Not Available	3366	Open in IMG/M
3300009488\|Ga0114925_10732604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	707	Open in IMG/M
3300009553\|Ga0105249_10482742	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300009678\|Ga0105252_10361939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	659	Open in IMG/M
3300009816\|Ga0105076_1096465	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010371\|Ga0134125_10753141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1073	Open in IMG/M
3300010375\|Ga0105239_11008976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	957	Open in IMG/M
3300010396\|Ga0134126_10605644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1253	Open in IMG/M
3300010397\|Ga0134124_10035032	All Organisms → cellular organisms → Bacteria	4175	Open in IMG/M
3300010397\|Ga0134124_10822496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	930	Open in IMG/M
3300010403\|Ga0134123_11515784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	715	Open in IMG/M
3300012885\|Ga0157287_1058948	Not Available	625	Open in IMG/M
3300012897\|Ga0157285_10030616	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300012904\|Ga0157282_10429169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	503	Open in IMG/M
3300012905\|Ga0157296_10352381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	534	Open in IMG/M
3300012908\|Ga0157286_10007214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2048	Open in IMG/M
3300012910\|Ga0157308_10239642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	634	Open in IMG/M
3300012964\|Ga0153916_12695566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	560	Open in IMG/M
3300012984\|Ga0164309_11114816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	657	Open in IMG/M
3300012985\|Ga0164308_11038558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	731	Open in IMG/M
3300012986\|Ga0164304_10061164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2097	Open in IMG/M
3300012989\|Ga0164305_11387520	Not Available	618	Open in IMG/M
3300013296\|Ga0157374_11656049	Not Available	664	Open in IMG/M
3300013306\|Ga0163162_10069786	All Organisms → cellular organisms → Bacteria	3566	Open in IMG/M
3300013306\|Ga0163162_10982735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	954	Open in IMG/M
3300013501\|Ga0120154_1004084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4553	Open in IMG/M
3300013772\|Ga0120158_10009461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9204	Open in IMG/M
3300014308\|Ga0075354_1114189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	580	Open in IMG/M
3300014310\|Ga0075331_1089796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300014314\|Ga0075316_1098519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	693	Open in IMG/M
3300014325\|Ga0163163_10416679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1402	Open in IMG/M
3300014823\|Ga0120170_1011741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2779	Open in IMG/M
3300015200\|Ga0173480_10648653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	655	Open in IMG/M
3300015372\|Ga0132256_100242153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1869	Open in IMG/M
3300016371\|Ga0182034_10122550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1907	Open in IMG/M
3300016371\|Ga0182034_10327292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300016404\|Ga0182037_10399737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300018028\|Ga0184608_10530766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	502	Open in IMG/M
3300020003\|Ga0193739_1114330	Not Available	673	Open in IMG/M
3300022534\|Ga0224452_1123958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	794	Open in IMG/M
3300022883\|Ga0247786_1010559	Not Available	1702	Open in IMG/M
3300022889\|Ga0247785_1031389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	624	Open in IMG/M
3300023072\|Ga0247799_1094896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	532	Open in IMG/M
3300024055\|Ga0247794_10341415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	511	Open in IMG/M
3300025322\|Ga0209641_10932435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	571	Open in IMG/M
3300025551\|Ga0210131_1013566	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300025551\|Ga0210131_1057160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	640	Open in IMG/M
3300025735\|Ga0207713_1147318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	763	Open in IMG/M
3300025899\|Ga0207642_10113105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1386	Open in IMG/M
3300025905\|Ga0207685_10080562	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300025914\|Ga0207671_10568251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	904	Open in IMG/M
3300025949\|Ga0207667_10672641	Not Available	1039	Open in IMG/M
3300026023\|Ga0207677_11996398	Not Available	539	Open in IMG/M
3300026075\|Ga0207708_10182127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1668	Open in IMG/M
3300026535\|Ga0256867_10193592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300027682\|Ga0209971_1164430	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	547	Open in IMG/M
3300027907\|Ga0207428_10443888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	946	Open in IMG/M
3300030494\|Ga0310037_10295368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	692	Open in IMG/M
3300031199\|Ga0307495_10219106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	532	Open in IMG/M
3300031229\|Ga0299913_11425412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	647	Open in IMG/M
3300031355\|Ga0307421_1074109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300031356\|Ga0307439_1142262	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300031359\|Ga0307426_1201122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	674	Open in IMG/M
3300031360\|Ga0307444_1147815	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300031566\|Ga0307378_11542803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	503	Open in IMG/M
3300031573\|Ga0310915_10900691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	620	Open in IMG/M
3300031770\|Ga0318521_10219073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1104	Open in IMG/M
3300031847\|Ga0310907_10213736	Not Available	929	Open in IMG/M
3300031941\|Ga0310912_10473354	Not Available	977	Open in IMG/M
3300031942\|Ga0310916_10686851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	867	Open in IMG/M
3300031952\|Ga0315294_10340927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1425	Open in IMG/M
3300032000\|Ga0310903_10237859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	871	Open in IMG/M
3300032060\|Ga0318505_10378830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	669	Open in IMG/M
3300032401\|Ga0315275_10600457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1229	Open in IMG/M
3300033291\|Ga0307417_10086543	All Organisms → cellular organisms → Bacteria → Proteobacteria	1275	Open in IMG/M
3300033805\|Ga0314864_0078711	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.83%
Host-Associated	Host-Associated	30.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.17%
Plants	Host-Associated → Plants	30.17%
Aquatic	Environmental → Aquatic	14.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.62%
Marine	Environmental → Aquatic → Marine	7.76%
Freshwater	Environmental → Aquatic → Freshwater	4.31%
Sediment	Environmental → Aquatic → Sediment	2.59%
Roots	Host-Associated → Plants → Roots	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.10%
Loam	Environmental → Terrestrial → Soil → Loam	13.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.76%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.72%
Lake	Environmental → Aquatic → Freshwater → Lake	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.86%
Sand	Environmental → Terrestrial → Soil → Sand	0.86%
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.07%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.76%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.59%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.86%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.86%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031355	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-70	Environmental	Open in IMG/M
3300031356	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90	Environmental	Open in IMG/M
3300031359	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033291	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10220J13317_107368142	3300001139	Soil	HPVTRCEPGKSSPSISRPGWNNKPFIPVSDRIVAEGIAKKMMRKTKGNS*
F14TB_1002288472	3300001431	Soil	VLIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMRKA*
JGI24747J21853_10142692	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	LIGETREEEAARLEKEIAAHPVTRCEPGERKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPES*
P52013CM_10991272	3300003465	Ore Pile And Mine Drainage Contaminated Soil	PEEEAARLEREIAAHPVTKCEPGERSPVSSRPGWSNKPFIPMAERIVAEGIAKKMMKKG*
Ga0055465_100871443	3300004013	Natural And Restored Wetlands	REIAAHPVTKCEPGERQPSSSRPGWSNKPFIPQADQNVAERIAKKMMRKT*
Ga0066814_101031381	3300005162	Soil	LEREIAAHPVTRCEPGKSGPSMSRPGWNNKPFIPVSDRIVAEGIAKKMMRKTKGNS*
Ga0065712_100429631	3300005290	Miscanthus Rhizosphere	LEKEIAAHPVTRCEPGERKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPES*
Ga0066388_1052608392	3300005332	Tropical Forest Soil	EAARLEKEIAAHPVTRCEPGERSPSSSRLGWSSKPFIPLSERTIAEGIAKKMMRKKP*
Ga0066388_1060986052	3300005332	Tropical Forest Soil	EEAARLEKEIAAHPVTRCEPGVRNPSSSRPGWSSKPIIPLSEQMVAEEIAKKMMRKTKAKS*
Ga0066388_1066144551	3300005332	Tropical Forest Soil	EKEIAAHPVTRCEPGERGPSSSRPGWSSKPFIPISERIVAEGIAKKMMRKR*
Ga0070673_1001735363	3300005364	Switchgrass Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0070685_113273912	3300005466	Switchgrass Rhizosphere	RVLTGETPEEEAARLEREIAAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD*
Ga0070679_1003877111	3300005530	Corn Rhizosphere	EIAAHPVTKCEPGARNPSSSRPGWSSKPIIPAKDLAVAEGIAKKMMRRKS*
Ga0068853_1020303581	3300005539	Corn Rhizosphere	GETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0070696_1019075802	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EAARLEREIAAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD*
Ga0066905_1021506251	3300005713	Tropical Forest Soil	GETPEEEAARLEREIASHPVTRCPPGQRDPFSSRPGWSSKPFIPMSDRIVAEEIAKKMSHKTKTKP*
Ga0066903_1010301603	3300005764	Tropical Forest Soil	VLIGETREEEAARLEKEIAAHPVTWCEPGEHKPLSRPGWSSKPFIPLSERMVAEGIAEKIMRKTKPES*
Ga0066903_1035814521	3300005764	Tropical Forest Soil	MSAKEEAARLEKEIAAHPVTRCEPGERKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRK
Ga0066903_1040868982	3300005764	Tropical Forest Soil	EEAARLEKEIAAHPVTRCEPGEHKPLSQRPGWSSKPFIPLSDRIVAEGIAEQMMRKAKPKS*
Ga0066903_1049460752	3300005764	Tropical Forest Soil	EEEAARLEKEIAAHPVTRCEPGERSPSSSRPGWSSKPFIPLSERTVAEGIAKKMMRKKP*
Ga0066903_1080009841	3300005764	Tropical Forest Soil	LEKEIAAHPVTRCEPGEHKPLSQRPGWSSKPFIPLSERVVAEGIAEKMMRKAKPKT*
Ga0068870_102627361	3300005840	Miscanthus Rhizosphere	LLGETREEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0068871_1010743682	3300006358	Miscanthus Rhizosphere	REAEAARLAAEIAAHPVTKCQPGERTPSSSRPGWNSKPIISQKDLREAEGIAKKMMRKS*
Ga0075425_1003039881	3300006854	Populus Rhizosphere	GETREEEAARLEKEIAAHPVTQCEPGERGPSSSRPGWSSKPFIPLSERAVAEGIAKKLMRKAQTKS*
Ga0075425_1010813461	3300006854	Populus Rhizosphere	LLGETLAEEAARLEKEIAAHPVTRCEPGARNPASWRQGWSSKPFIPRSEQIVAEEIAKKLMRKAKPES*
Ga0075425_1027916462	3300006854	Populus Rhizosphere	GETREEEAARLEKEIAGHPVTRCKPGQSNPSSSRPGWSSKPFIPLSERITAEEIAKKVMRKPKTKS*
Ga0075425_1031343351	3300006854	Populus Rhizosphere	REEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA*
Ga0079219_116377851	3300006954	Agricultural Soil	IGETREEEAARLEKEIAAHPVTRCKPGERSPSSSRPGWSSKPLIPISEQRIAEGIAKKMMRKG*
Ga0105095_101473221	3300009053	Freshwater Sediment	LIGETREEEAARLEREIAAHPVTKCEPGERQPSSSRPGWSNKPFIPQADQNVAERIAKKMMRKP*
Ga0111539_105553972	3300009094	Populus Rhizosphere	VLIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA*
Ga0111539_108589201	3300009094	Populus Rhizosphere	REIAAHPVTRCEPGKSGPSMSRPGWSNKPFIPVSDRIVAEGIAKKMMRKGKGDS*
Ga0111539_108665421	3300009094	Populus Rhizosphere	EEAARLEKEIAAHPVTRCKPGEHSPSSSRPGWSNKPFIPLSERTAAEGIAKKIMRKL*
Ga0111539_126903972	3300009094	Populus Rhizosphere	LVRRGKRRRLDWKKEIAAHPVTRCEPGERKHLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPE
Ga0105245_130336392	3300009098	Miscanthus Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGARTPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAK
Ga0105247_103361383	3300009101	Switchgrass Rhizosphere	AAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD*
Ga0105091_103552061	3300009146	Freshwater Sediment	VLIGETREEEAARLEKEIAAHPVTKCKPAQSNLSSSRPGWSSKPIFPVSEQIAAEEIAKKMRRKPKMSS*
Ga0114129_118801701	3300009147	Populus Rhizosphere	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRGWSSKPFIARSEQIVAEGIAKKIMRKAKPES*
Ga0105243_106692512	3300009148	Miscanthus Rhizosphere	ARLAKEIAAHPVTKCEPGARNPSSSRAGWSSKPIIPAKDLAVAEGIAKKIMRKS*
Ga0105243_129867231	3300009148	Miscanthus Rhizosphere	MPKRVLIGETPEEAARLEKETAAHPVTRCEPGERNPPSSRPGWSSKPLIPISEQRVAEGIAKKIMRKA*
Ga0075423_130859601	3300009162	Populus Rhizosphere	VLLGETLAEEAARLEKEIAAHPVTRCEPGARSPSSSRPGWSSKPFIPLSEQIVAEGIAKKIMREN
Ga0105248_100945131	3300009177	Switchgrass Rhizosphere	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0114925_107326042	3300009488	Deep Subsurface	LGETLAEEAARLEKEIAAHPVTRCEPGERSPLSSRPGWSDKPFISLSERNVAERIAKKIMRK*
Ga0105249_104827423	3300009553	Switchgrass Rhizosphere	EEEAARLEKEIAAHPVTRCEPGERNPPSSRPGWSSKPFIPISERIVAEGIAKKIMRKP*
Ga0105252_103619391	3300009678	Soil	ARLEREIAAHPVTRCEPGKSSPSISRPGWNNKPFIPVSDRIVAEGIAKKMMRKGKGDS*
Ga0105076_10964652	3300009816	Groundwater Sand	GETREEEAARLEREIAAHPVTRCEPGESNPSSSRPGWSSKPFIPLAERTVAEGIAKKMMRKP*
Ga0134125_107531412	3300010371	Terrestrial Soil	LIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA*
Ga0105239_110089762	3300010375	Corn Rhizosphere	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRGWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0134126_106056443	3300010396	Terrestrial Soil	LAKEIAAHPVTKCEPGARNPSSSRAGWSSKPIIPAKDLAVAEGIAKKIMRKS*
Ga0134124_100350323	3300010397	Terrestrial Soil	MLLGETFAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSGKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0134124_108224963	3300010397	Terrestrial Soil	ETREAEAARLAAEIAAHPVTKCQPGERTPSSSRPGWNSKPIISQKDLREAEGIAKKMMRKS*
Ga0134123_115157842	3300010403	Terrestrial Soil	LEREIAAHPVTRCEPGKSSPSISRPGWNNKPFIPVSDRIVAEGIAKKMMRKGKGDS*
Ga0157287_10589482	3300012885	Soil	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRQAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0157285_100306161	3300012897	Soil	KEIAAHPVTRCEPGARNPSSWRQAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0157282_104291691	3300012904	Soil	MLLGETFAEEAARLEKEIAAHPVTRCEPGVRSPSSSRPGWSSKPFIPLSERITAEEIAKK
Ga0157296_103523812	3300012905	Soil	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRGWSSKPFIPLSERITAEEIAKKIMRKPKTKS*
Ga0157286_100072141	3300012908	Soil	KEIAAHPVTRCEPGERKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPES*
Ga0157308_102396422	3300012910	Soil	LIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKI
Ga0153916_126955661	3300012964	Freshwater Wetlands	EAARLEKEIAAHPVTRCEPGVRNPSSSRPGWSSKRLIPLSEQIVAEGIAKKMIRKAKAKS
Ga0164309_111148161	3300012984	Soil	TREEEAARLEKEIAAHPVTRCEPGERGPSSSRPGWSSKPFIPLSERAVAERIAKKIMRKP
Ga0164308_110385581	3300012985	Soil	TREEEAARLAREIAAHPVTKCEPGERAPSSSRPGWSNKPLIPMTEQRVAEGIAKKMMRKP
Ga0164304_100611641	3300012986	Soil	EEEAARLEKEIAAHPVTRCEPGERGPSSSRPGWSSKPFIPLSERNVAEGIAKKIMRKAQTKS*
Ga0164305_113875202	3300012989	Soil	AARLEKEIAAHPVTRCEPGAHSPSSSRPGWSSKPFIPQAERTVAEGIAKKIMRKS*
Ga0157374_116560492	3300013296	Miscanthus Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKA
Ga0163162_100697865	3300013306	Switchgrass Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGARNPSSWRQAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES*
Ga0163162_109827351	3300013306	Switchgrass Rhizosphere	LEKEIAAHPVTRCEPGEYSPSSSRPGWSSKPFIPVSEWAVAEGIAKKIMRKS*
Ga0120154_10040848	3300013501	Permafrost	VLLGETREEEAARLEREIAAHPVTRCKPGEHNPSSSRPGWSSKPIISLSEQRVAEGIARKIMRKP*
Ga0120158_1000946114	3300013772	Permafrost	LEREIAAHPVTRCKPGEHNPSSSRPGWSSKPIISLSEQRVAEGIARKIMRKP*
Ga0075354_11141891	3300014308	Natural And Restored Wetlands	LEREIAAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD*
Ga0075331_10897961	3300014310	Natural And Restored Wetlands	VLVGETLAEEAARLEKEIAAHPVTRCEPGARNPSSSRPGWSSMPLIPHSEQMVAEGSAKKMMRKTKTKS*
Ga0075316_10985192	3300014314	Natural And Restored Wetlands	EIAAHPVTKCEPGEHKPTSSRPGWSSKPFIPQAELTVAEGIAKKMMRKPKK*
Ga0163163_104166793	3300014325	Switchgrass Rhizosphere	LIGETREEEAVRLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA*
Ga0120170_10117415	3300014823	Permafrost	EEAARLEREIAAHPVTRCKPGEHNPSSSRPGWSSKPIISLSEQRVAEGIARKIMRKP*
Ga0173480_106486532	3300015200	Soil	LIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMRKA*
Ga0132256_1002421533	3300015372	Arabidopsis Rhizosphere	LIGETLEEETARLAKEIAAHPVTKCEPGARNPSSSRPGWSSKPIIPAKDLAVAEGIAKKIMRKS*
Ga0182034_101225501	3300016371	Soil	EAARLEKEIATYPVTRCPPGERSPFSSRPGWSNKPLIPLSEQVFAEGIAKRITRKA
Ga0182034_103272923	3300016371	Soil	VLIGETREEEAARLEKEIAAHPVTRCKPGEHKPLSRPGCSSKPFIPLSERIVAEGTAKKIMRKAKPES
Ga0182037_103997373	3300016404	Soil	REEEAARLEKEIAAHPVTRCKPGEHGPSSSRPGWSSKPFIPLSERTVAEGIAKKMMRKKP
Ga0184608_105307662	3300018028	Groundwater Sediment	LGETLAEEAARLEKEIAAHPVTRCEPSVRNPSSSRPGWSSKPFIPLSERSVAEGIAKKMMRKAQTKS
Ga0193739_11143302	3300020003	Soil	REEEAARLEKEIAAHPVTRCDLGQSNPSSSRPGWSSKPFIPLSERIVAEEIAKKMMRKPKTKS
Ga0224452_11239581	3300022534	Groundwater Sediment	IGETREEEAARLEKEIAAHPVTRCEPGAHSPSSSRPGWSSKPYIPQAERTVAEGIAKKIMRKS
Ga0247786_10105591	3300022883	Soil	LIGETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA
Ga0247785_10313891	3300022889	Soil	IGETEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPK
Ga0247799_10948962	3300023072	Soil	GETREEEAARLEKEIAAHPVTKCEPGRSNPSSSRPGWSNKPLIPLSERIVAEGIAKKIMPKA
Ga0247794_103414151	3300024055	Soil	RVLIGETREEEAARLEREIAAHPVTRCEPGKSGPSMSRPGWSNKPFIPVSDRIVAEGIAKKMMRKGKGDS
Ga0209641_109324352	3300025322	Soil	ETPQEEAARLAREIAAHPVTKCEPGERNPVSSRPGWSNKPFIPLAERIVAEGIAKKIMKK
Ga0210131_10135663	3300025551	Natural And Restored Wetlands	REEEAARLEREIAAHPVTKCEPGERNPSSSRPGWDNKPFIPLRERTVAEGIAKKMMRKP
Ga0210131_10571601	3300025551	Natural And Restored Wetlands	LIGETREEEAARLEKEIAAHPVTKCEPGERQPTSSRPGWSNKPFIPQKDLTVAEGIAKKMMRKP
Ga0207713_11473182	3300025735	Switchgrass Rhizosphere	EKEIAAHPVTRCEPGERKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPES
Ga0207642_101131051	3300025899	Miscanthus Rhizosphere	ARLAKEIAAHPVTKCEPGARNPSSSRPGWSSKPIIPAKDLAVAEGIAKKIMRKS
Ga0207685_100805622	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES
Ga0207671_105682512	3300025914	Corn Rhizosphere	VLTGETPEEEAARLEREIAAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD
Ga0207667_106726412	3300025949	Corn Rhizosphere	MLLGETFAEEAARLEKEIAAHPVTRCEPGAGNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES
Ga0207677_119963981	3300026023	Miscanthus Rhizosphere	MLLGETLAEEAARLEKEIAAHPVTRCEPGARNPSSWRRAWSSKPFIPRSEQIVAEGIAKKIMRKAKPES
Ga0207708_101821271	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LEEETARLAKEIAAHPVTKCEPGARNPSSSRAGWSSKPIIPAKDLAVAEGIAKKIMRKS
Ga0256867_101935922	3300026535	Soil	AEEAARLEKEIAAHPVTRCEPGARNPSSSRPGWSSKPFIPLSEQMVAEGIAKKMMRKPKAKS
Ga0209971_11644301	3300027682	Arabidopsis Thaliana Rhizosphere	EAARLEREIAAHPVTKCEPGERQPSSSRPGWSNKPFIPQADQNVAERIAKKMMRKP
Ga0207428_104438882	3300027907	Populus Rhizosphere	GETREEEAARLEKEIAAHPVTQCEPGERGPSSSRPGWSSKPFIPLSERAVAEGIAKKLMRKAQTKS
Ga0310037_102953681	3300030494	Peatlands Soil	TREEEAARLEKEIAAHPVTRCEPGERNPSSSRPGWSSKPFIPLSERSVAEGIAKKMMRKA
Ga0307495_102191061	3300031199	Soil	LGETREEEAARLEREIAAHPVTRCEPGERSPSSSRPGWSNKPFIPLAERTVAERIAKKMMRKP
Ga0299913_114254122	3300031229	Soil	RVLVGETREEEEARLAAEIAAHPVTKCEPGEYKPTSSRPGWSNKSFIPQADAAEAERIAKKMRKS
Ga0307421_10741093	3300031355	Salt Marsh	AARLEREIAAHPVTKCEPGEYKPTSSRPGWSNKPFVPQKDQAVAEGIAKKMMRKPKG
Ga0307439_11422621	3300031356	Salt Marsh	RLEREIAAHPVTRCAPGERGPSLSRPGWSNKPFIPEAERAAAEKIAKKLLRKP
Ga0307426_12011221	3300031359	Salt Marsh	REIAAHPVTKCEPGEYKPTSSRPGWSNKPFVPQKDQAVAEGIAKKMMRKPKG
Ga0307444_11478152	3300031360	Salt Marsh	RVLTGETREEEAARLEREIAAHPVTRCAPGERGPSLSRPGWSNKPFIPEAERAAAEKIAKKLLRKP
Ga0307378_115428031	3300031566	Soil	RLEREIAAHPVTKCEPGEHRPSSSRPGWSSKPFIPQADLTVAEGIAKKIMRKP
Ga0310915_109006911	3300031573	Soil	AARLEKEIAAHPVTRCEPGEHKPLSRPGWSSKPFIPLSERIVAEGIAKKIMRKAKPES
Ga0318521_102190733	3300031770	Soil	GETREEEAARLEKEIAAHPVTRCEPGERKFLSRPGWSSKPFIPLSERIVAEGTAKKIMRKAKPES
Ga0310907_102137361	3300031847	Soil	PVTRCEPGKSGPSMSRPGWNNKPFIPVSDRIVAEGIAKKMMRKGKGDS
Ga0310912_104733542	3300031941	Soil	IGETREAEAARLEKEIAAHPVTRCKPGEHKPLSRPGWSSKPFIPLSERIVAEGIAKKLMRKAKPES
Ga0310916_106868512	3300031942	Soil	TLEEEAARLEKEIAAHPVTRCEPGERGPSSSRPGWSSKPFIPLSERTVAEGIAKKMMRKK
Ga0315294_103409271	3300031952	Sediment	PEEEAARLAQEIAAHPVTRCEPGERNPTSSRPGWSNKPFIPLAERIVAEGIAKKIMRKP
Ga0310903_102378593	3300032000	Soil	AAHPVTKCEPGDRNPVSSRPGWNNKPFMPMKDRIAAEGIAKKLMKKD
Ga0318505_103788302	3300032060	Soil	LEEEAARLEKEIAAHPVTRCEPGERGPSSSRPGWSSKPFIPLSERTVAEGIAKKMMRKKP
Ga0315275_106004573	3300032401	Sediment	GETPEEEAARLAQEIAAHPVTRCEPGERNPASSRPGWSSKPFIPLAERIVAEGIAKKIMRKT
Ga0307417_100865432	3300033291	Salt Marsh	REEEAARLEREIAAHPVTRCEPGERGPSLSRPGWSNKPFIPEAERAAAEKIAKKMLRKP
Ga0314864_0078711_598_783	3300033805	Peatland	EEAARLEKEIAAHPVTRCEPGQSDPSSARPGWSSKPFIPLSERVVAEEIAKKMTRKPKTK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078772

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences