Metagenome / Metatranscriptome Family F078459

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078459
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	62 residues
Representative Sequence	MRRGVVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Number of Associated Samples	92
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.03 %
% of genes near scaffold ends (potentially truncated)	24.14 %
% of genes from short scaffolds (< 2000 bps)	76.72 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (87.931 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (35.345 % of family members)
Environment Ontology (ENVO)	Unclassified (62.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.517 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Ga0066674_101307702 2Ga0066677_101666962 3Ga0066683_104163242 4Ga0066680_102180132 5Ga0066673_100208763 6Ga0066673_100290801 7Ga0066688_102739362 8Ga0066684_101893902 9Ga0066685_101651172 10Ga0066678_103267552 11Ga0066678_103322392 12Ga0066676_100487574 13Ga0066686_108582432 14Ga0066687_102793662 15Ga0070707_1002733392 16Ga0066697_101772291 17Ga0066697_106038452 18Ga0066695_101314683 19Ga0066661_101850672 20Ga0066692_103783962 21Ga0066698_106971552 22Ga0066698_108049952 23Ga0066670_100475324 24Ga0066693_100304492 25Ga0066659_100138603 26Ga0066659_108039642 27Ga0099791_100026474 28Ga0066710_1029483021 29Ga0066710_1032674711 30Ga0066710_1041068042 31Ga0066710_1043336951 32Ga0099829_102229061 33Ga0099830_101491683 34Ga0066709_1028208841 35Ga0134084_101880742 36Ga0134086_102193992 37Ga0134064_100175392 38Ga0134071_100439212 39Ga0134071_100637913 40Ga0134071_104029582 41Ga0134066_100390202 42Ga0137392_101525781 43Ga0137391_100431093 44Ga0137393_113953722 45Ga0137389_101568212 46Ga0137389_103175232 47Ga0137388_100535452 48Ga0137364_100281874 49Ga0137364_101297613 50Ga0137365_102511731 51Ga0137363_101582732 52Ga0137363_107666072 53Ga0137362_112627692 54Ga0137380_104031662 55Ga0137377_109846522 56Ga0137387_102028451 57Ga0137384_100570982 58Ga0137385_102017391 59Ga0137360_104927692 60Ga0137361_116071272 61Ga0137390_101039592 62Ga0134060_12401971 63Ga0137358_102074223 64Ga0137395_100462342 65Ga0137359_112349942 66Ga0137404_102641701 67Ga0137407_121352172 68Ga0137410_101784102 69Ga0134076_102246461 70Ga0134081_101258692 71Ga0134081_101260942 72Ga0134075_101583032 73Ga0134078_100054002 74Ga0134078_102413072 75Ga0137409_104770671 76Ga0134089_101300412 77Ga0134069_12535381 78Ga0134112_100455342 79Ga0134112_104822351 80Ga0134074_10058922 81Ga0066655_100233362 82Ga0066655_109742321 83Ga0066667_103799781 84Ga0066662_109657371 85Ga0066669_116051812 86Ga0066669_116284582 87Ga0209237_10744331 88Ga0209468_10042861 89Ga0209468_10162594 90Ga0209469_10021514 91Ga0209761_12717541 92Ga0209268_10040043 93Ga0209472_10161323 94Ga0209152_100869752 95Ga0209801_12767031 96Ga0209375_10366312 97Ga0209803_10687561 98Ga0209159_10965822 99Ga0209690_10390602 100Ga0209160_10160463 101Ga0209058_10161555 102Ga0209058_10919501 103Ga0209056_100805513 104Ga0209056_106263652 105Ga0209376_10105434 106Ga0209376_10968203 107Ga0209474_107304871 108Ga0209388_11311612 109Ga0209488_102488332 110Ga0307469_111754002 111Ga0307475_102601711 112Ga0307473_102474742 113Ga0307479_108317282 114Ga0307471_1009528182 115Ga0307471_1019266052 116Ga0307471_1021806551
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Ga0066674_101307702 2Ga0066683_104163242 3Ga0066684_101893902 4Ga0066710_1032674711 5Ga0134071_100439212 6Ga0137385_102017391 7Ga0137361_116071272 8Ga0307469_111754002 9Ga0307471_1019266052
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Ga0066674_101307702 2Ga0066683_104163242 3Ga0066684_101893902 4Ga0066710_1032674711 5Ga0134071_100439212 6Ga0137385_102017391 7Ga0137361_116071272 8Ga0307469_111754002 9Ga0307471_1019266052
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 12.70% β-sheet: 14.29% Coil/Unstructured: 73.02%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00756	Esterase	22.41
PF04264	YceI	20.69
PF06762	LMF1	19.83
PF02798	GST_N	7.76
PF01590	GAF	3.45
PF08448	PAS_4	0.86
PF07690	MFS_1	0.86

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COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	20.69

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.93 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	10.34 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10.34 %
Unclassified	root	N/A	12.07 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Unclassified	root	N/A	12.07 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	7.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.76 %
Unclassified	root	N/A	12.07 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005166\|Ga0066674_10130770	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300005171\|Ga0066677_10166696	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300005172\|Ga0066683_10416324	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005174\|Ga0066680_10218013	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300005175\|Ga0066673_10020876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3014	Open in IMG/M
3300005175\|Ga0066673_10029080	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300005178\|Ga0066688_10273936	Not Available	1084	Open in IMG/M
3300005179\|Ga0066684_10189390	Not Available	1325	Open in IMG/M
3300005180\|Ga0066685_10165117	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300005181\|Ga0066678_10326755	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M

Showing 1 to 10 of 116 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.55%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	46.55%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.97%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	16.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	35.34%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.59%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M

Showing 1 to 10 of 92 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066674_101307702	3300005166	Soil	RKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0066677_101666962	3300005171	Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0066683_104163242	3300005172	Soil	MRRGVVVAVLGLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066680_102180132	3300005174	Soil	MRRGVVVAVLVLLVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066673_100208763	3300005175	Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066673_100290801	3300005175	Soil	MGRKTVVAAVLVLGLAGCRSSPRPIYEYEPPVTITSTDQPVPAAAPTNTTAPPRAPVWFKGEAR*
Ga0066688_102739362	3300005178	Soil	MRRGVVVAVLVLVVVGWRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066684_101893902	3300005179	Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLL
Ga0066685_101651172	3300005180	Soil	VRVLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066678_103267552	3300005181	Soil	MRRGVVVTVLVLAVAGYRGRPVPIYEYEPPLTITSTDKPVPQAGPASTTLPPRAPAWLRGEAR*
Ga0066678_103322392	3300005181	Soil	MRPEVVVTVLVLAVAGCRGRPAPTYEYEPPLTITSTDEPVPQAGPTGATLPPRAPVWLRGEAR*
Ga0066676_100487574	3300005186	Soil	KTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0066686_108582432	3300005446	Soil	MRRWIVVAVLVLAVAGCRGRPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066687_102793662	3300005454	Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRAVPPATPTNTTAPPRAPVWFKGEAR*
Ga0070707_1002733392	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKTVVVAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0066697_101772291	3300005540	Soil	LVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066697_106038452	3300005540	Soil	MRRGVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTAEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066695_101314683	3300005553	Soil	VLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066661_101850672	3300005554	Soil	MGWKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0066692_103783962	3300005555	Soil	MRRGVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066698_106971552	3300005558	Soil	MRRWIVVAVLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066698_108049952	3300005558	Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066670_100475324	3300005560	Soil	VLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066693_100304492	3300005566	Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAW
Ga0066659_100138603	3300006797	Soil	VRVLVLAAAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066659_108039642	3300006797	Soil	VAVLVLAVAGCRGTPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0099791_100026474	3300007255	Vadose Zone Soil	MRRWVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066710_1029483021	3300009012	Grasslands Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPVWLRGEAR
Ga0066710_1032674711	3300009012	Grasslands Soil	APTRYALRARRWQSMRRVLVLAVAGCRGRPVPIYEYEPPLTITSTDKPVPHAGPTSTTLPPRAPAWLRGEAR
Ga0066710_1041068042	3300009012	Grasslands Soil	MGRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPAAAPTNTTAPPRAPIWLKGEAR
Ga0066710_1043336951	3300009012	Grasslands Soil	MRRWIVVAVLVLAVAGCRGTPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0099829_102229061	3300009038	Vadose Zone Soil	MKLWVVVAVLVLVVAGCRGRPVPIYEYEPTLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0099830_101491683	3300009088	Vadose Zone Soil	MKLWVVVAVLVLVVAGCRGSTAPIYEYEPPLTIISTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0066709_1028208841	3300009137	Grasslands Soil	MGRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPAAAPTNTTAPPRAPIWLKGEAR*
Ga0134084_101880742	3300010322	Grasslands Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAAPTSTTLLPRAPAWLRGEAR*
Ga0134086_102193992	3300010323	Grasslands Soil	VLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134064_100175392	3300010325	Grasslands Soil	MGRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0134071_100439212	3300010336	Grasslands Soil	MLVVAGWKRPAPIYEYEAPLTITSTDEPVPQAGPTSTTVLPRASTWLRGDPRPRPLTTAR
Ga0134071_100637913	3300010336	Grasslands Soil	VLVLAAAGCRGRPAPIYQYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134071_104029582	3300010336	Grasslands Soil	MRRKTVIAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPLPPAAPTNTTAPPRAPLWLKGEAR*
Ga0134066_100390202	3300010364	Grasslands Soil	MGWKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDLPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0137392_101525781	3300011269	Vadose Zone Soil	MRRWVVVAVVVLVVAGCRGRPAPIYEYEPPLTIISTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137391_100431093	3300011270	Vadose Zone Soil	MKLWVVVAVLVLVVAGCRGRPAPIYEYEPTLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137393_113953722	3300011271	Vadose Zone Soil	MRRWVVVAVVVLVVAGCRGRPAPIYEYEPTLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137389_101568212	3300012096	Vadose Zone Soil	MRRWVVVAVLVLVVAGCRGRPAPIYEYEPTLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137389_103175232	3300012096	Vadose Zone Soil	MRRWVAVAVVVLVVAGCRGRPAPIYESEPPLTIISTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137388_100535452	3300012189	Vadose Zone Soil	MRRWVVVTVLVLAVAGCRGRPAPIYEYEPPLTIISTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137364_100281874	3300012198	Vadose Zone Soil	MRRWIVVAVLVLAVAGCRGTPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137364_101297613	3300012198	Vadose Zone Soil	VEGMGRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0137365_102511731	3300012201	Vadose Zone Soil	MRRGVVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137363_101582732	3300012202	Vadose Zone Soil	MRRWVVVAVLVLAVAGCRGRPVPIYEYEPPLTITSTDKPVPQAGPTSTTLPPRAPAWLRGEAR*
Ga0137363_107666072	3300012202	Vadose Zone Soil	VAVLVLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137362_112627692	3300012205	Vadose Zone Soil	MRRGVVVAVLVLAVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLPPRAPAWLRGEAR*
Ga0137380_104031662	3300012206	Vadose Zone Soil	VAVLVLVVAGCGGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137377_109846522	3300012211	Vadose Zone Soil	VTVFVLAVAGCRGRPVPIYEYEPPLTITSTDEPVPQAGPTSTTLPPRAPAWLRGEAR*
Ga0137387_102028451	3300012349	Vadose Zone Soil	MRRGVVVAVLGLVVASCRGRPAPIYEYEPPLTLTSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137384_100570982	3300012357	Vadose Zone Soil	MRRWVVVAVLVLAVVGCRGRPAPIYEYEPPLTLTSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137385_102017391	3300012359	Vadose Zone Soil	SRAARYALRAGRWWAMRRGVVVAVLGLVVAGCRGRPAPIYGYEPPLPLAPTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137360_104927692	3300012361	Vadose Zone Soil	MRRGVVVAVLVLAVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137361_116071272	3300012362	Vadose Zone Soil	VTVLVLAVAGCRGRPVPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWL
Ga0137390_101039592	3300012363	Vadose Zone Soil	MKLWVVVAVLVLAVAGCRGRPAPIYEYEPTLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134060_12401971	3300012410	Grasslands Soil	RAERYALRAGRWRAMRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137358_102074223	3300012582	Vadose Zone Soil	RWAVVPLQELVVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137395_100462342	3300012917	Vadose Zone Soil	MRRWVVVAVLVLAVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137359_112349942	3300012923	Vadose Zone Soil	VVAVLLLVVVGCRGRPAPIYEYEPPLPITSTDQPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137404_102641701	3300012929	Vadose Zone Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEGR*
Ga0137407_121352172	3300012930	Vadose Zone Soil	MRREVVVAVLLLVVVGCRGRPAPIYEYEPPLTITSTDQPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137410_101784102	3300012944	Vadose Zone Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134076_102246461	3300012976	Grasslands Soil	MRRGVVVTVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134081_101258692	3300014150	Grasslands Soil	VLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTGTTLLPRAPAWLRGEAR*
Ga0134081_101260942	3300014150	Grasslands Soil	MRRKTVIAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR*
Ga0134075_101583032	3300014154	Grasslands Soil	VLVLAAADCRGRPAPIYQYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134078_100054002	3300014157	Grasslands Soil	MGWKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPATPTNTTAPPRAPVWFKGEAR*
Ga0134078_102413072	3300014157	Grasslands Soil	AVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0137409_104770671	3300015245	Vadose Zone Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLPGEAR*
Ga0134089_101300412	3300015358	Grasslands Soil	LVLLVVGCRGRPAPIYEYEPQLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR*
Ga0134069_12535381	3300017654	Grasslands Soil	MRRWIVVAVLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0134112_100455342	3300017656	Grasslands Soil	MRRGVVVTVLVLAVAGCRGRPAPIYEYEPPLTIISTDKPVPQVGPTSTTLLPRAPAWLRGEAR
Ga0134112_104822351	3300017656	Grasslands Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPLPPAAPTNTTAPPRAPLWLKGEAR
Ga0134074_10058922	3300017657	Grasslands Soil	VRVLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0066655_100233362	3300018431	Grasslands Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR
Ga0066655_109742321	3300018431	Grasslands Soil	AMRRGVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTAEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0066667_103799781	3300018433	Grasslands Soil	MRRGVVVAVLVLLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0066662_109657371	3300018468	Grasslands Soil	MRRGVVVTVLVLAVAGYRGRPVPIYEYEPPLTITSTDKLVPQAGPASTTLPPRAPAWLRGEAR
Ga0066669_116051812	3300018482	Grasslands Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAAPTSTTLLPRAPAWLRGEAR
Ga0066669_116284582	3300018482	Grasslands Soil	MRRGVVVAVLGLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209237_10744331	3300026297	Grasslands Soil	VTVLVLAVAGCRGRPVPIYEYEPPLTITSTDKPVPQAGPTST
Ga0209468_10042861	3300026306	Soil	AAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR
Ga0209468_10162594	3300026306	Soil	MRRWIVVAVLVLAVAGCRGRPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209469_10021514	3300026307	Soil	MGRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR
Ga0209761_12717541	3300026313	Grasslands Soil	MRRGVVVTVFVLLVAGCWGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTVPPRAPVWLKGEAR
Ga0209268_10040043	3300026314	Soil	MGRKTVVAAVLVLGLAGCRSSPRPIYEYEPPVTITSTDQPVPAAAPTNTTAPPRAPVWFKGEAR
Ga0209472_10161323	3300026323	Soil	MRRGVVVAVLGLVVAGCRGRPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209152_100869752	3300026325	Soil	MGWKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEAR
Ga0209801_12767031	3300026326	Soil	MRPEVVVTVLVLAVAGCRGRPAPTYEYEPPLTITSTDEPVPQAGPTGATLPPRAPVWLRGEAR
Ga0209375_10366312	3300026329	Soil	MRRWIVVAVLVLAVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209803_10687561	3300026332	Soil	VVAVLGLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209159_10965822	3300026343	Soil	VLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209690_10390602	3300026524	Soil	MRRGVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTAEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209160_10160463	3300026532	Soil	MRRGVVVTVLVLAVAGYRGRPVPIYEYEPPLTITSTDKPVPQAGPASTTLPPRAPAWLRGEAR
Ga0209058_10161555	3300026536	Soil	MRRGVVVAVLVLVVVGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209058_10919501	3300026536	Soil	ITRREWRRGVVVRVLVLAVAGCRGGPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209056_100805513	3300026538	Soil	MRRVLVLAVAGCRGRPVPIYEYEPPLTITSTDKPVPQAGPTSTTLPPRAPAWLRGEAR
Ga0209056_106263652	3300026538	Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPAAPTNTTAPPRAPVWFKGEA
Ga0209376_10105434	3300026540	Soil	MRRKTVVAAVLVLGVAGCRSSPRPIYEYEPPVTITSTDRPVPPATPTNTTAPPRAPVWFKGEAR
Ga0209376_10968203	3300026540	Soil	MRRGVVVAVLVLVVVGCRGRPVPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209474_107304871	3300026550	Soil	LRAGRWWAMRRGVVVAVLGLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209388_11311612	3300027655	Vadose Zone Soil	MRRWVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTDEPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0209488_102488332	3300027903	Vadose Zone Soil	MRRVVVAVLVLVVAGCRGSTAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0307469_111754002	3300031720	Hardwood Forest Soil	MGRTLVVTMLVLGAAGCHGRPQPIYEYEAPVTITSTDRPVPQAGPTSTTAPARAPAWLRGGAPR
Ga0307475_102601711	3300031754	Hardwood Forest Soil	MRRGVVLTVLVLLVAGCRGRPRPIYEYERPLTITSTDKPVPQAGPTTTTLPPRAPVWLRGEAR
Ga0307473_102474742	3300031820	Hardwood Forest Soil	MRRVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0307479_108317282	3300031962	Hardwood Forest Soil	MRRWVVVALLVLVVAGCRGRRAPIYEYEPTLTITSTDKPIPQAGPTSTTLLPRAPVWLRGEAR
Ga0307471_1009528182	3300032180	Hardwood Forest Soil	MRRWVVVAVLVLVVAGCRGRPAPIYEYEPPLTITSTDKPVPQAGPTSTTLLPRAPAWLRGEAR
Ga0307471_1019266052	3300032180	Hardwood Forest Soil	MRRTLVATVLALGVAGCRRRAQPIYEYEPPVTITSTDRPVPQAEPTSTTVPPRPPAWLR
Ga0307471_1021806551	3300032180	Hardwood Forest Soil	MRWTLVVTVLVLGVAGCHGRPQPIYEYEPPVTITSTDRPVPQAGPTSTTAPPRAPAWLRGDAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078459

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences