NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F078426

Metagenome / Metatranscriptome Family F078426

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078426
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 49 residues
Representative Sequence MKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Number of Associated Samples 58
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 29.57 %
% of genes near scaffold ends (potentially truncated) 34.48 %
% of genes from short scaffolds (< 2000 bps) 80.17 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.172 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(24.138 % of family members)
Environment Ontology (ENVO) Unclassified
(61.207 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(60.345 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 69.39%    β-sheet: 0.00%    Coil/Unstructured: 30.61%
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51015202530354045MKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRFCytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
19.8%80.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater Lake
Meromictic Pond
Marine Sediment
Deep Subsurface
Seawater
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Pelagic Marine
Pelagic Marine
Seawater
Saline Water And Sediment
Hypersaline Lake Sediment
Soil
5.2%5.2%24.1%5.2%10.3%15.5%3.4%3.4%21.6%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI20154J14316_1015925913300001348Pelagic MarineEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGRF*
Ga0074649_101131533300005613Saline Water And SedimentMKKTKEEIQEMGVHSERDYYSAFTVICCGLGAGACIALSLIVEYLTGMF*
Ga0074649_103994733300005613Saline Water And SedimentMKKTKEEIQEMGVYSERDYYSAFTVICCGLGAGACIALSLIVEYLTGNF*
Ga0070749_1001710923300006802AqueousMKKTKEELEEMGIYSERNWYSAVTVLCCGLGAGVCIALSLLVEYLTGRF*
Ga0070749_1027494643300006802AqueousKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0070749_1050483423300006802AqueousMKKTEKELEEMGIYSERNYYSAVTVLFCGLGAGVCIALSLLVEYLAGRF*
Ga0070750_1008598343300006916AqueousMKKTKEELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF*
Ga0070750_1018080913300006916AqueousEELDEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRL*
Ga0070746_1020584333300006919AqueousMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0070745_129035813300007344AqueousMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAG
Ga0099851_113084313300007538AqueousEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099851_123973343300007538AqueousMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYL
Ga0099849_104450863300007539AqueousMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF*
Ga0099849_108912133300007539AqueousMKKTEKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF*
Ga0099849_113657723300007539AqueousMGNIPHKQTKKGHMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099849_115168933300007539AqueousMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099849_119000523300007539AqueousMKKTKEELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099849_120226213300007539AqueousMKKTEKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099849_132877523300007539AqueousMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0099849_135049823300007539AqueousMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVYIALSLLVEYLTGRF*
Ga0099847_109817623300007540AqueousMKKTKEEIEEMGVYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0115550_102301073300009076Pelagic MarineMKKTEKELEEMGIYSERNYYSAVTVLCCALGAGVCIALSLIVEYLTGRF*
Ga0115550_104139313300009076Pelagic MarineMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF*
Ga0115550_104455123300009076Pelagic MarineMKKTEKELEEMGIYSERNYYSAFTVLCCALGAGVCIAISLIVEYLTGRF*
Ga0115550_107040143300009076Pelagic MarineMKKTKEEIEEMGIYSERNYYSAVTVLCCALGAGVCIALSLLVEYLTGRF*
Ga0115550_109875933300009076Pelagic MarineMKKTGKELEEMGIYNERNYYSAVTALCCGLGAGVCIALSLLV
Ga0114918_1022676613300009149Deep SubsurfaceMKKTKEEIEEMGIYSEGDYHSAVTVLCCALGAGVCIALSLIVEYLTGKF*
Ga0114918_1024799533300009149Deep SubsurfaceMKKTEKEIQEMGVHSEREYYSAFTVLCCALGAGVCIALSLIVEYLKGKF*
Ga0114918_1048063913300009149Deep SubsurfaceMIRKENRMKKTEKELEEMGIYSERNYYSAFTVLCCGLGAGVCIALSLLVEYLTGKF*
Ga0114918_1050427043300009149Deep SubsurfaceENRMKKTEKELEEMGIYSERNYYSAFTVICCALGAGVCIALSLIVEYLAGKF*
Ga0114918_1069684713300009149Deep SubsurfaceMKKTKEEIEEMGIYSERNYHSAVTVLCCGLGAGVCI
Ga0115562_103515413300009434Pelagic MarineMAILPQNNKPPTMARKGKHRMKKTEKEIQEMGVHSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF*
Ga0115562_106286653300009434Pelagic MarineMKKTKEEIEEMGIYSERNYYSAFTVLCCALGAGVCIALSLIVEYLTGKF*
Ga0115561_101701323300009440Pelagic MarineMAILPQNNKPPTMARKGKHRMKKTEKEIQEMGVHSEREYYSAVTVICCALGAGACIALSLIVEYLTGKF*
Ga0115561_133925333300009440Pelagic MarineKKTKEEIQEMGIYSERNYYSAVTVICCALGAGVCIALSLIVEYLTGKF*
Ga0115561_136294323300009440Pelagic MarineMKKTKEEIQEMGVHSEREYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF*
Ga0115560_106832423300009447Pelagic MarineMKKTKEEIQEMGIYSERNYYSAVTVICCALGAGVCIALSLIVEYLTGKF*
Ga0130032_103664713300009860Meromictic PondKGTNHMKKTQKELDEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0129348_123445613300010296Freshwater To Marine Saline GradientKLRKAYHMKKTEKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0129348_132060413300010296Freshwater To Marine Saline GradientMKKTEKELEEMGIYSERNYYSAVTVLRCGLGAGVCIALSLLVE
Ga0129345_103897763300010297Freshwater To Marine Saline GradientMKKTKEEIEEMGIYGERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0129345_112074423300010297Freshwater To Marine Saline GradientMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVDYLAGRF*
Ga0129345_120732533300010297Freshwater To Marine Saline GradientMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCI
Ga0129345_132028413300010297Freshwater To Marine Saline GradientAYHMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0129345_133024023300010297Freshwater To Marine Saline GradientMKKTKEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRL*
Ga0129342_102830623300010299Freshwater To Marine Saline GradientMKKTEKEIEEMGIHSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0129342_111495133300010299Freshwater To Marine Saline GradientMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVDYLAGRF*
Ga0129351_110283113300010300Freshwater To Marine Saline GradientMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGR
Ga0136656_117514213300010318Freshwater To Marine Saline GradientMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEY
Ga0136656_130404313300010318Freshwater To Marine Saline GradientMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIAL
Ga0180437_1076830233300017963Hypersaline Lake SedimentMKKTKEELEEMGIDSERNYYSAVTVLCCGLGAGVCITLSLLVEYLTGRF
Ga0180431_1048891333300017987Hypersaline Lake SedimentMKKTKEELDEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0180432_1031502143300017989Hypersaline Lake SedimentGHLNVKKGHMKKTKEELDEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0180434_1075402733300017991Hypersaline Lake SedimentMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0188851_100598513300018682Freshwater LakeMKKTEKEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLLVEYLAGKF
Ga0188851_100664853300018682Freshwater LakeMKKTEKEIQEMGVHSEREYYSAFTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0213868_1001444283300021389SeawaterMKKTEKEIEEMGIHSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0196905_110813533300022198AqueousYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0196901_125766533300022200AqueousMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVC
(restricted) Ga0233411_1012340333300023112SeawaterMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0228636_1001134133300024191SeawaterMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGRF
Ga0210003_107577633300024262Deep SubsurfaceMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF
(restricted) Ga0255049_1046917833300024517SeawaterEMGIYNERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
(restricted) Ga0255048_1062940333300024518SeawaterGNKQMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
(restricted) Ga0255047_1037032833300024520SeawaterGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0208303_102309553300025543AqueousMKKTKEEIEEMGVYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0209405_102600873300025620Pelagic MarineMAILPQNNKPPTMARKGKHRMKKTEKEIQEMGVHSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0209504_100858453300025621Pelagic MarineMKKTEKELEEMGIYSERNYYSAVTVLCCALGAGVCIALSLIVEYLTGRF
Ga0209504_101368343300025621Pelagic MarineMKKTKEEIQEMGIYSERNYYSAVTVICCALGAGVCIALSLIVEYLTGKF
Ga0209504_101542653300025621Pelagic MarineMKKTEKELEEMGIYSERNYYSAFTVLCCALGAGVCIAISLIVEYLTGRF
Ga0209504_108704123300025621Pelagic MarineMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF
Ga0209197_101577483300025637Pelagic MarineMARKGKHRMKKTEKEIQEMGVHSEREYYSAVTVICCALGAGACIALSLIVEYLTGKF
Ga0208161_112356913300025646AqueousMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0208162_104778223300025674AqueousMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0208162_105059753300025674AqueousMKKTKEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0208162_107040533300025674AqueousMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0208162_108067533300025674AqueousMKKTEKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0208162_113131533300025674AqueousMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0209603_120692913300025849Pelagic MarineNNKPTIRYMKKTEKELEEMGIYSERNYYSAVTVICCALGAGVCIALSLIVEYLTGKF
Ga0209119_103832923300025860Pelagic MarineMARKGKHRMKKTEKEIQEMGVHSEREYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0209533_107076743300025874Pelagic MarineMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGRF
Ga0209533_113846033300025874Pelagic MarineKKTKEEIQEMGIYSERNYYSAVTVICCALGAGVCIALSLIVEYLTGKF
Ga0208644_1023484113300025889AqueousMKKTKEELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0228644_100090193300026453SeawaterMKKTKEEIEEIGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGRF
Ga0228604_110214413300026506SeawaterMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTVRF
(restricted) Ga0255041_1006036233300027837SeawaterMKKTEKELEEMGIYSERNYYSAMTVLCCGLGAGVCIALSLLVEYLAGRF
(restricted) Ga0233415_1040481413300027861SeawaterMKKTKEELEEMGIYSERNYYSAMTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0209536_10145602913300027917Marine SedimentMKKTEKEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLL
(restricted) Ga0233413_1020027613300027996SeawaterMKKTEKELEEMGIYSERNYYSAMTVLCCGLGAGVCIALSLLVE
Ga0228640_110724623300028273SeawaterMKKTKEEIEEIGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGR
Ga0228646_104828223300028280SeawaterMKKTKEELDAMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0307380_1017545243300031539SoilMKKTEKEIQEMGVHSEREYYSAFTVICCGLGAGVCIALSLIVEYLTGKF
Ga0307380_1019319933300031539SoilMKKTEKELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0307380_1041689843300031539SoilMKKTEKEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLIVEYL
Ga0307379_1044328123300031565SoilMKKTEKEIQEMGVHSEREYYSAFTVLCCGLGAGVCIALSLLVEYLAGRF
Ga0307379_1163623623300031565SoilMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGACIAISLIVEYLT
Ga0307378_1017136823300031566SoilMKKTEKEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLIVEYLTGRF
Ga0307378_1022292123300031566SoilMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEFLTGSF
Ga0307378_1043576933300031566SoilMKKTKEEIEEMGIYSERNYYSAFTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0307378_1119119633300031566SoilMKKTEKELEEMGNYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0307376_1008491453300031578SoilMKKTEKEIEEMGVHSEREYYSAFTVLCCGLGAGVCIALSLIVEYLTG
Ga0307376_1010053033300031578SoilMKKTEKEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLLVEYLTGKF
Ga0307376_1011149333300031578SoilMKKTKEELEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF
Ga0307376_1026527533300031578SoilMKKTEKEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLIVEYLTGKF
Ga0307376_1027990333300031578SoilMKKTEKELEEMGIYSERNYYSAFTVLCCGLGAGVCIALSLLVEYLAGKF
Ga0307376_1044693133300031578SoilMVNKGKNVARKENKMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF
Ga0307376_1045115623300031578SoilMKKTKEEIEEMGIYSERNYYSAVTVLCCGLGAGVCIALSLIVEYLTGKF
Ga0307376_1076536723300031578SoilMKKTKEEIEEMGIYSERNYYSAFTVLCCGLGAGVCIALSLIVEYLTGKF
Ga0307376_1083006123300031578SoilMKKTKEELEEMGIYSQRNYYSAFTVLCCGLGAGVCIALSLLVEYLTGRF
Ga0307376_1086342423300031578SoilMKKTKEEIQEMGVHSEREYYSAFTVICCALGAGVCIALSLIVEYLTGKF
Ga0307376_1090850723300031578SoilMKKTEKEIQEMGVHSEREYYSAVTVLCCALGAGVCIALSLIVEYLTGKF
Ga0307375_1028504313300031669SoilMKKTEKEIQEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLTGKF
Ga0307375_1063231933300031669SoilMKKTEKELEEMGIYSERNYYSAVTVLCCALGAGVCIAL
Ga0307377_1010905913300031673SoilMKKTEKELEEMGIYSERNYYSAFTVLCCGLGAGVCIA
Ga0307377_1017356813300031673SoilMKKTKEEIEEMGIYSERNYYSAFTVLCCGLGAGVCIALSLLVEYLTG
Ga0307377_1108464923300031673SoilMKKTEKEIQEMGVHSEREYYSAFTVLCCGLGAGVCIALSLIVEYLTGKF


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