Metagenome Family F078390

Basic Information
Family ID	F078390
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	47 residues
Representative Sequence	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Number of Associated Samples	67
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	6.90 %
% of genes near scaffold ends (potentially truncated)	22.41 %
% of genes from short scaffolds (< 2000 bps)	66.38 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (67.241 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (61.207 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (53.448 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 1B570J40625_1001002092 2JGI25908J49247_100883703 3Ga0065861_10144622 4Ga0066223_104594610 5Ga0049081_1000754910 6Ga0049081_100488772 7Ga0049081_101946183 8Ga0049081_102364461 9Ga0049080_100378052 10Ga0075464_1000096620 11Ga0075464_1000216411 12Ga0075464_100264035 13Ga0075464_102266072 14Ga0075464_103214202 15Ga0070748_13623552 16Ga0102865_12082083 17Ga0105747_10741532 18Ga0114343_11386252 19Ga0114876_10939443 20Ga0114876_12180543 21Ga0114880_10543071 22Ga0114880_11277052 23Ga0102860_10946242 24Ga0114962_101148744 25Ga0114977_100605721 26Ga0114970_101677322 27Ga0114970_103089092 28Ga0114974_105110492 29Ga0114964_105194683 30Ga0114960_100649427 31Ga0133913_111284374 32Ga0139557_10395041 33Ga0151515_1016621 34Ga0153697_101446 35Ga0164292_101022972 36Ga0177922_111321042 37Ga0181363_10036621 38Ga0181363_10407552 39Ga0181363_10444541 40Ga0181350_10630322 41Ga0181356_10274436 42Ga0181356_10720262 43Ga0181356_10763284 44Ga0181357_10640613 45Ga0181346_100093525 46Ga0181346_100093528 47Ga0181348_11415222 48Ga0181348_12604073 49Ga0181355_12422861 50Ga0181359_100065517 51Ga0181359_10244942 52Ga0181359_10757201 53Ga0181359_12107642 54Ga0211736_109653343 55Ga0211734_102324763 56Ga0211726_100902417 57Ga0211729_1011129410 58Ga0211729_1130224611 59Ga0211731_104236666 60Ga0211731_114980663 61Ga0208232_10498703 62Ga0181354_10163565 63Ga0181354_10242624 64Ga0214919_1000752618 65Ga0214919_101454602 66Ga0214919_102387243 67Ga0208916_1000016642 68Ga0208916_1000639710 69Ga0208916_100569223 70Ga0208916_103859011 71Ga0208974_10201296 72Ga0208975_100267018 73Ga0208975_10234212 74Ga0208975_11054182 75Ga0209085_11589094 76Ga0209354_102395062 77Ga0209354_102511842 78Ga0247723_10416851 79Ga0247723_11392812 80Ga0315291_102161705 81Ga0315291_105339452 82Ga0315291_106014884 83Ga0315291_110671593 84Ga0315293_100950597 85Ga0315293_101925372 86Ga0315288_113912101 87Ga0315288_115720201 88Ga0315290_110615744 89Ga0315285_101185216 90Ga0315285_104022683 91Ga0315285_106274541 92Ga0315294_100666057 93Ga0315294_101282925 94Ga0315294_103195563 95Ga0315294_112712032 96Ga0315274_102397592 97Ga0315274_102743295 98Ga0315274_108874761 99Ga0315274_117503413 100Ga0315289_104299914 101Ga0315276_114397412 102Ga0334986_0241576_654_797 103Ga0334986_0610925_2_112 104Ga0334987_0374605_523_669 105Ga0334995_0200030_1269_1388 106Ga0334995_0244394_1_126 107Ga0334995_0465407_616_756 108Ga0334995_0488721_189_332 109Ga0335020_0379536_132_278 110Ga0335027_0486633_1_138 111Ga0335029_0029372_821_967 112Ga0335031_0060946_59_199 113Ga0335036_0179501_82_228 114Ga0335036_0705690_482_595 115Ga0335051_0181017_812_958 116Ga0335066_0256732_395_550
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 1B570J40625_1001002092 2JGI25908J49247_100883703 3Ga0070748_13623552 4Ga0102865_12082083 5Ga0114962_101148744 6Ga0181363_10036621 7Ga0208916_1000016642 8Ga0209354_102511842
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0075464_102266072 2JGI25908J49247_100883703 3Ga0065861_10144622 4Ga0049081_102364461 5Ga0075464_103214202 6Ga0114343_11386252 7Ga0114876_12180543 8Ga0114880_11277052 9Ga0102860_10946242 10Ga0114970_101677322 11Ga0153697_101446 12Ga0181346_100093525 13Ga0181359_10757201 14Ga0211726_100902417 15Ga0214919_102387243 16Ga0315293_101925372 17Ga0334995_0488721_189_332 18Ga0335051_0181017_812_958
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.95% β-sheet: 0.00% Coil/Unstructured: 46.05%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04466	Terminase_3	3.48
PF13392	HNH_3	2.61
PF07453	NUMOD1	2.61
PF01541	GIY-YIG	1.74
PF14550	Peptidase_S78_2	1.74
PF04851	ResIII	1.74
PF13673	Acetyltransf_10	1.74
PF02810	SEC-C	0.87
PF00535	Glycos_transf_2	0.87
PF14236	DUF4338	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	3.48
COG0255	Ribosomal protein L29	Translation, ribosomal structure and biogenesis [J]	0.87

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	32.76 %
Unclassified	root	N/A	67.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	1.72 %
Unclassified	root	N/A	67.24 %
Viruses	superkingdom	All Organisms → Viruses	31.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.72 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	21.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Unclassified	root	N/A	67.24 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	21.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
Unclassified	root	N/A	67.24 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Unclassified	root	N/A	67.24 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	21.55 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	21.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Unclassified	root	N/A	67.24 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	0.86 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	21.55 %
Firmicutes bacterium ADurb.Bin193	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin193	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Unclassified	root	N/A	67.24 %

Name	Rank	Taxonomy	Distribution
Firmicutes bacterium ADurb.Bin193	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin193	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.48 %
Unclassified	root	N/A	67.24 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	21.55 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002835\|B570J40625_100100209	Not Available	3584	Open in IMG/M
3300003277\|JGI25908J49247_10088370	Not Available	757	Open in IMG/M
3300004448\|Ga0065861_1014462	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9828	Open in IMG/M
3300004461\|Ga0066223_1045946	Not Available	4146	Open in IMG/M
3300005581\|Ga0049081_10007549	All Organisms → Viruses → Predicted Viral	4108	Open in IMG/M
3300005581\|Ga0049081_10048877	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1603	Open in IMG/M
3300005581\|Ga0049081_10194618	Not Available	728	Open in IMG/M
3300005581\|Ga0049081_10236446	Not Available	645	Open in IMG/M
3300005582\|Ga0049080_10037805	Not Available	1678	Open in IMG/M
3300006805\|Ga0075464_10000966	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12862	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.28%
Terrestrial	Environmental → Terrestrial	1.72%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.72%
Freshwater	Environmental → Aquatic → Freshwater	85.34%
Marine	Environmental → Aquatic → Marine	12.93%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	11.21%
Ice	Environmental → Aquatic → Freshwater → Ice	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.72%
Lake	Environmental → Aquatic → Freshwater → Lake	55.17%
Lentic	Environmental → Aquatic → Freshwater → Lentic	28.45%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.72%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	18.97%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	36.21%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	26.72%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.21%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	8.62%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.72%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.72%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	16.38%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.76%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.72%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.86%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	18.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.76%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.45%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	7.76%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.97%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental	Open in IMG/M

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1001002092	3300002835	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLNNK*
JGI25908J49247_100883703	3300003277	Freshwater Lake	LGWKQILKYSMSKEITLERLAEAIIQTKKEVMYLKAELEKVQSYLREQHKLKKQLKKIV*
Ga0065861_10144622	3300004448	Marine	MAKEITLERLAQAIIQTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK*
Ga0066223_104594610	3300004461	Marine	MVSMAKEITLERLAQAIIQTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK*
Ga0049081_1000754910	3300005581	Freshwater Lentic	MVSMSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLKK*
Ga0049081_100488772	3300005581	Freshwater Lentic	MAKELTLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKNQLNKK*
Ga0049081_101946183	3300005581	Freshwater Lentic	MSKELTLERLAKAIIETKKEVMHLKAELEKVQSYLREQHKLKKQLNNK*
Ga0049081_102364461	3300005581	Freshwater Lentic	MANELTLERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKKQLKK*
Ga0049080_100378052	3300005582	Freshwater Lentic	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLKK*
Ga0075464_1000096620	3300006805	Aqueous	MAKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK*
Ga0075464_1000216411	3300006805	Aqueous	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK*
Ga0075464_100264035	3300006805	Aqueous	MSKELTLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK*
Ga0075464_102266072	3300006805	Aqueous	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK*
Ga0075464_103214202	3300006805	Aqueous	MANELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKNKL*
Ga0070748_13623552	3300006920	Aqueous	LAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK*
Ga0102865_12082083	3300007639	Estuarine	MVSMAKQITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKTGTGMLNN
Ga0105747_10741532	3300007974	Estuary Water	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKTGTGMLNNK*
Ga0114343_11386252	3300008110	Freshwater, Plankton	MVSMSKELTLERLAEAIIKTKKEVMYLKTELEKVQAYLREQHKLKNQIKGK*
Ga0114876_10939443	3300008448	Freshwater Lake	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKIRKQLNNK*
Ga0114876_12180543	3300008448	Freshwater Lake	MSKEITIEKLTEAIIKTKKEVMYLKAELEKVQSYLREQHKLKKQLNNK*
Ga0114880_10543071	3300008450	Freshwater Lake	LAEAIIKTTKEVRMLKLELEKVQSYLREQHKLKKQLNKNK*
Ga0114880_11277052	3300008450	Freshwater Lake	MPKEITKERLAEAIIKTTKEVRLLKLELEKVQSYLREQHRLKKQLKK*
Ga0102860_10946242	3300009056	Estuarine	MVSMAKQITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKTGTGMLNNK*
Ga0114962_101148744	3300009151	Freshwater Lake	MSKELTLEKLAEAIIKTKKEVMYLKTELEKVQSYLR
Ga0114977_100605721	3300009158	Freshwater Lake	MAKELTLEKLALAIIQTKKEVMELKAELEKVQSYLREQHKLKKQLKQ*
Ga0114970_101677322	3300009163	Freshwater Lake	MSKEITIEKLAEAIIKTKKEVMILKEQLEKVQEYLREQHKIRKQLNNK*
Ga0114970_103089092	3300009163	Freshwater Lake	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLKK*
Ga0114974_105110492	3300009183	Freshwater Lake	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK*
Ga0114964_105194683	3300010157	Freshwater Lake	AIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK*
Ga0114960_100649427	3300010158	Freshwater Lake	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLR
Ga0133913_111284374	3300010885	Freshwater Lake	MSKELTLEKLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK*
Ga0139557_10395041	3300011010	Freshwater	MAKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK*
Ga0151515_1016621	3300011114	Freshwater	MSKDLTLERLAEAIIKTKKEVMYLKTELEKVQAYLREQHKLKKQLNNKQTWQQSIK*
Ga0153697_101446	3300011334	Freshwater	MAKELTLEKLASAIIQTTKEVWQLKAELEKVQSYLRAQHKLKQQLNTKK*
Ga0164292_101022972	3300013005	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQIQNK*
Ga0177922_111321042	3300013372	Freshwater	MAKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK*
Ga0181363_10036621	3300017707	Freshwater Lake	TKERLAEAIIKTTKEVRLLKAELEKVQAYLREQHKIRKQLNQK
Ga0181363_10407552	3300017707	Freshwater Lake	MAKEITKERLAEAIIKTTKEVRLLKAELEKVQAYLREQHKIRKQLNKK
Ga0181363_10444541	3300017707	Freshwater Lake	MAKEITKERLAEAIIKTTKEVRLLKAELEKVQAYLREQHKI
Ga0181350_10630322	3300017716	Freshwater Lake	MKMVMHNMSKELTLERLAKAIIETKKEVMYLKAELEKVQAYLREQHKLKKQLNNK
Ga0181356_10274436	3300017761	Freshwater Lake	LAKAIIETKKEVMYLKAELEKVQAYLREQHKLKKQLNNK
Ga0181356_10720262	3300017761	Freshwater Lake	MSKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0181356_10763284	3300017761	Freshwater Lake	MSKELTLERLAKAIIETKKEVMYLKAELEKVQSYL
Ga0181357_10640613	3300017777	Freshwater Lake	MAKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0181346_100093525	3300017780	Freshwater Lake	MKMVMHNMSKELTLERLAKAIIETKKEVMHLKAELEKVQSYLREQHKLKKQLNTK
Ga0181346_100093528	3300017780	Freshwater Lake	MVSMSKELTLERLAKAIIETKKEVMYLKTELEKVQSYLREQ
Ga0181348_11415222	3300017784	Freshwater Lake	MSKELTLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0181348_12604073	3300017784	Freshwater Lake	MAKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKNQLKK
Ga0181355_12422861	3300017785	Freshwater Lake	KEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Ga0181359_100065517	3300019784	Freshwater Lake	MSKELTLERLAKAIIETKKEVMYLKAELEKVQAYLREQHKLKKQLNNK
Ga0181359_10244942	3300019784	Freshwater Lake	MSKEITLERLAEAIIQTKKEVMYLKAELEKVQSYLREQHKLKKQLKK
Ga0181359_10757201	3300019784	Freshwater Lake	MAKEITKERLAEAIIKTTKEVRLLKAELEKVQAYLREQHKIRKQLNNK
Ga0181359_12107642	3300019784	Freshwater Lake	MSKEITLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKKQLNNKQNGKH
Ga0211736_109653343	3300020151	Freshwater	MSKDLTLERLAEAIIKTKKEVMYLKTELEKVQAYLREQHKLKKQIQNK
Ga0211734_102324763	3300020159	Freshwater	MAKEITLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Ga0211726_100902417	3300020161	Freshwater	MSKELTLERLAEAIIKTKKEVMHLKAELDKVQSYLREQHKIRKQLNNK
Ga0211729_1011129410	3300020172	Freshwater	MVSMSKELTLERLAEAIIKTKKEVMHLKAELDKVQSYLREQHKIRKQLNNK
Ga0211729_1130224611	3300020172	Freshwater	MSKELTLERLAQAIIETKKEVMYLKTELEKVQSYLREQHKLKKQLINKIPNG
Ga0211731_104236666	3300020205	Freshwater	MNYVNQLYNMSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKIRKQLNTK
Ga0211731_114980663	3300020205	Freshwater	MSKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKIRNN
Ga0208232_10498703	3300020527	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLNNK
Ga0181354_10163565	3300022190	Freshwater Lake	MSKELTLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0181354_10242624	3300022190	Freshwater Lake	MSKEITLERLAEAIIQTKKEVMYLKAELEKVQSYLREQHKLKKQLKKIV
Ga0214919_1000752618	3300023184	Freshwater	MANELTLERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKKQIKK
Ga0214919_101454602	3300023184	Freshwater	MVKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLKK
Ga0214919_102387243	3300023184	Freshwater	MAKELTLEKLALAIIQTKKEVMELKAELEKVQSYLREQHKLKQQLKK
Ga0208916_1000016642	3300025896	Aqueous	LIKIKVKIMAKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0208916_1000639710	3300025896	Aqueous	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK
Ga0208916_100569223	3300025896	Aqueous	MSKELTLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK
Ga0208916_103859011	3300025896	Aqueous	MSKEITLERLTQAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0208974_10201296	3300027608	Freshwater Lentic	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0208975_100267018	3300027659	Freshwater Lentic	LAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK
Ga0208975_10234212	3300027659	Freshwater Lentic	MSKELTLERLAKAIIETKKEVMHLKAELEKVQSYLREQHKLKKQLNNK
Ga0208975_11054182	3300027659	Freshwater Lentic	MAKELTLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0209085_11589094	3300027741	Freshwater Lake	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Ga0209354_102395062	3300027808	Freshwater Lake	MSKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0209354_102511842	3300027808	Freshwater Lake	IIETKKEVMYLKAELEKVQAYLREQHKLKKQLNNK
Ga0247723_10416851	3300028025	Deep Subsurface Sediment	MSKELTMERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKKQLKQ
Ga0247723_11392812	3300028025	Deep Subsurface Sediment	MSKELTKERLAEAIIKTKKEVMYLKAELEKVQSYLREQHKLKKQIKK
Ga0315291_102161705	3300031707	Sediment	CYLFYHSMTKEITLERLALAIIQTKKEVIHLKTELEKVQSYLREQHKLKKQIKK
Ga0315291_105339452	3300031707	Sediment	MSKELTLERLAIAIIKTKKEVMELKAELEKVQSYLREQHKLKQQLKK
Ga0315291_106014884	3300031707	Sediment	MSKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK
Ga0315291_110671593	3300031707	Sediment	MSKELTLERLAKAIIETKKEVMYLKAELEKVQSYLREQHKLKKQLNNK
Ga0315293_100950597	3300031746	Sediment	MSKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKNQLKK
Ga0315293_101925372	3300031746	Sediment	MTKEITLERLALAIIQTKKEVIHLKTELEKVQSYLREQHKLKKQIKK
Ga0315288_113912101	3300031772	Sediment	EITLERLALAIIQTKKEVIHLKTELEKVQSYLREQHKLKKQIKK
Ga0315288_115720201	3300031772	Sediment	MSKEITLERLAEAIIETKKEVMYLKTELEKVQSYLREQHKLKKQIQNK
Ga0315290_110615744	3300031834	Sediment	AIIQTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0315285_101185216	3300031885	Sediment	MSKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLK
Ga0315285_104022683	3300031885	Sediment	MANELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKNKL
Ga0315285_106274541	3300031885	Sediment	MKKELTLEKLALAIIQTKKEVMELKAELEKVQSYLREQHKLKQQLKK
Ga0315294_100666057	3300031952	Sediment	MSKELTLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQIQNK
Ga0315294_101282925	3300031952	Sediment	MSKELTLQRLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLKK
Ga0315294_103195563	3300031952	Sediment	MSKELTLERLAEAIIQIKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Ga0315294_112712032	3300031952	Sediment	MSKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNKK
Ga0315274_102397592	3300031999	Sediment	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNNK
Ga0315274_102743295	3300031999	Sediment	ERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQIQNK
Ga0315274_108874761	3300031999	Sediment	MSKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKLKKQIQNK
Ga0315274_117503413	3300031999	Sediment	QLVSMSKEITLERLAEAIIQTKKEVMYLKTELEKVQSYLREQHKIRKQLNNK
Ga0315289_104299914	3300032046	Sediment	MSKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQIQNK
Ga0315276_114397412	3300032177	Sediment	MANELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNKLKNKLX
Ga0334986_0241576_654_797	3300034012	Freshwater	MSKELTLEKLALAIIQTTKEVRQLKAELEKVQSYLREQHKLKQQLKK
Ga0334986_0610925_2_112	3300034012	Freshwater	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLRE
Ga0334987_0374605_523_669	3300034061	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKIRKQLNNK
Ga0334995_0200030_1269_1388	3300034062	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHK
Ga0334995_0244394_1_126	3300034062	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLK
Ga0334995_0465407_616_756	3300034062	Freshwater	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLK
Ga0334995_0488721_189_332	3300034062	Freshwater	MSKEITKERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKQQLKK
Ga0335020_0379536_132_278	3300034082	Freshwater	MAKEITLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0335027_0486633_1_138	3300034101	Freshwater	ANELTLERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKKQLK
Ga0335029_0029372_821_967	3300034102	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKNQLNKK
Ga0335031_0060946_59_199	3300034104	Freshwater	MANELTLERLAEAIIKTTKEVRQLKAELEKVQSYLREQHKLKKQLK
Ga0335036_0179501_82_228	3300034106	Freshwater	MSKELTLERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKQQLNNK
Ga0335036_0705690_482_595	3300034106	Freshwater	EAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK
Ga0335051_0181017_812_958	3300034109	Freshwater	MSKEITLERLAKAIIETKKEVMYLKTELEKVQSYLREQHKIRKQLNNK
Ga0335066_0256732_395_550	3300034112	Freshwater	MTIMTKELTIERLAEAIIKTKKEVMYLKTELEKVQSYLREQHKLKKQLNTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078390

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences