Metagenome Family F078139

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078139
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	53 residues
Representative Sequence	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPAVTEQSETPQ
Number of Associated Samples	85
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	48.72 %
% of genes near scaffold ends (potentially truncated)	31.03 %
% of genes from short scaffolds (< 2000 bps)	74.14 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (52.586 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (57.759 % of family members)
Environment Ontology (ENVO)	Unclassified (92.241 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (93.103 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1TB03JUN2009H_0089745 2TB03JUN2009E_0090501 3TB18AUG2009H_0257173 4TBL_comb47_HYPODRAFT_100656934 5TBL_comb47_HYPODRAFT_101447991 6JGI24028J26656_10061464 7G310J44882_101181661 8JGI26470J50227_10099412 9JGI26470J50227_10118317 10JGI26470J50227_10143315 11JGI26470J50227_10175021 12JGI26470J50227_10560231 13JGI26470J50227_10588772 14Ga0007850_10000159 15Ga0007811_10061053 16Ga0007811_10079753 17Ga0007865_10010485 18Ga0007865_10253662 19Ga0007846_10086633 20Ga0007846_10126112 21Ga0007877_10063485 22Ga0007877_10116521 23Ga0007878_10166042 24Ga0007880_10252991 25Ga0007829_101234221 26Ga0065173_10078884 27Ga0007804_10614461 28Ga0007804_11349102 29Ga0007827_100122843 30Ga0007827_100417481 31Ga0007854_100007443 32Ga0007809_100459972 33Ga0007809_100741352 34Ga0007881_10354414 35Ga0007881_10523884 36Ga0007810_10693393 37Ga0007882_102682101 38Ga0007819_10588852 39Ga0007862_10170662 40Ga0007871_11129033 41Ga0007848_10184901 42Ga0007857_10022574 43Ga0007857_10343692 44Ga0007857_10419142 45Ga0007816_10246652 46Ga0007824_10161712 47Ga0007824_10508692 48Ga0007855_10228595 49Ga0007805_10899722 50Ga0114962_104274903 51Ga0073936_101022047 52Ga0114951_104995601 53Ga0164296_10259734 54Ga0164296_10465005 55Ga0164296_12979982 56Ga0164297_100489024 57Ga0214256_1059692 58Ga0214198_10020255 59Ga0214198_10387411 60Ga0214255_10231072 61Ga0214207_100328110 62Ga0214252_10215301 63Ga0214249_10169422 64Ga0214244_10517081 65Ga0214220_10275212 66Ga0214246_10097132 67Ga0214170_10466032 68Ga0214174_1033613 69Ga0214206_10029841 70Ga0214206_10376762 71Ga0214175_10029549 72Ga0214175_10037425 73Ga0214167_10081784 74Ga0214165_10869752 75Ga0214166_10628371 76Ga0212088_100628152 77Ga0212088_101696603 78Ga0256681_125247593 79Ga0208504_100004043 80Ga0208504_10123862 81Ga0208385_10345432 82Ga0208505_10150873 83Ga0207957_10142862 84Ga0208738_100011541 85Ga0208738_10027633 86Ga0208871_10072953 87Ga0208256_10058378 88Ga0208250_10264762 89Ga0208257_10026731 90Ga0208874_10323412 91Ga0207955_10361432 92Ga0208876_10038801 93Ga0208378_10303061 94Ga0208378_10350161 95Ga0208614_10074573 96Ga0208877_10050035 97Ga0208877_10203731 98Ga0208500_10181242 99Ga0208622_10245804 100Ga0208744_10908422 101Ga0208389_10726162 102Ga0208379_10186291 103Ga0208388_10403302 104Ga0208498_10304833 105Ga0208873_10747972 106Ga0208872_100059241 107Ga0209188_10128376 108Ga0209085_11181253 109Ga0316219_10673522 110Ga0316219_13390112 111Ga0316217_104027981 112Ga0316225_10125821 113Ga0316227_11617631 114Ga0316227_12262761 115Ga0316227_12359553 116Ga0316227_12494171
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1TB03JUN2009H_0089745 2TB03JUN2009E_0090501 3TBL_comb47_HYPODRAFT_101447991 4JGI24028J26656_10061464 5G310J44882_101181661 6Ga0007811_10079753 7Ga0007880_10252991 8Ga0065173_10078884 9Ga0007857_10022574 10Ga0208505_10150873 11Ga0208257_10026731
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1TB03JUN2009H_0089745 2TB03JUN2009E_0090501 3TBL_comb47_HYPODRAFT_101447991 4JGI24028J26656_10061464 5G310J44882_101181661 6Ga0007811_10079753 7Ga0007880_10252991 8Ga0065173_10078884 9Ga0007857_10022574 10Ga0208505_10150873 11Ga0208257_10026731
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.49% β-sheet: 0.00% Coil/Unstructured: 41.51%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02195	ParBc	18.97
PF13384	HTH_23	12.07
PF00166	Cpn10	10.34
PF04466	Terminase_3	6.90
PF16510	P22_portal	2.59
PF13518	HTH_28	1.72
PF02796	HTH_7	1.72
PF13151	DUF3990	1.72
PF08291	Peptidase_M15_3	0.86
PF07883	Cupin_2	0.86

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COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	10.34
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	6.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	19.83 %
Unclassified	root	N/A	16.38 %
Viruses	superkingdom	All Organisms → Viruses	63.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.83 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	52.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	52.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.83 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Unclassified	root	N/A	16.38 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	52.59 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	52.59 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	52.59 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Unclassified	root	N/A	16.38 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.62 %
Unclassified	root	N/A	16.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	52.59 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000162\|TB03JUN2009H_c008974	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1481	Open in IMG/M
3300000176\|TB03JUN2009E_c009050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1841	Open in IMG/M
3300000177\|TB18AUG2009H_c025717	Not Available	560	Open in IMG/M
3300000553\|TBL_comb47_HYPODRAFT_10065693	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2046	Open in IMG/M
3300000553\|TBL_comb47_HYPODRAFT_10144799	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1050	Open in IMG/M
3300002091\|JGI24028J26656_1006146	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1745	Open in IMG/M
3300002933\|G310J44882_10118166	Not Available	554	Open in IMG/M
3300003375\|JGI26470J50227_1009941	All Organisms → Viruses → Predicted Viral	2404	Open in IMG/M
3300003375\|JGI26470J50227_1011831	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2140	Open in IMG/M
3300003375\|JGI26470J50227_1014331	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1881	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	10.34%
Lentic	Environmental → Aquatic → Freshwater → Lentic	89.66%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	9.48%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	18.97%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.59%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	58.62%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	10.34%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	57.76%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	18.97%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	9.48%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.45%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	2.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.72%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.59%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	2.59%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.86%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000162	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000177	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion	Environmental	Open in IMG/M
3300000553	Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003787	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009H_0089745	3300000162	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPVIPDASTEVQN*
TB03JUN2009E_0090501	3300000176	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPPVQSEETPQ*
TB18AUG2009H_0257173	3300000177	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEAPVQSEETPQ
TBL_comb47_HYPODRAFT_100656934	3300000553	Freshwater	MFNFTHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ*
TBL_comb47_HYPODRAFT_101447991	3300000553	Freshwater	LEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
JGI24028J26656_10061464	3300002091	Lentic	MFKFEHTTQELNLIIASLEHKIRDMQEMVAKLVAHAQTQLPKPEETTTEAQ*
G310J44882_101181661	3300002933	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG*
JGI26470J50227_10099412	3300003375	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSPKPQVTDASTEVQS*
JGI26470J50227_10118317	3300003375	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKLPQAMEEQKAIEG*
JGI26470J50227_10143315	3300003375	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
JGI26470J50227_10175021	3300003375	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEETPPQ*
JGI26470J50227_10560231	3300003375	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEETSPQ*
JGI26470J50227_10588772	3300003375	Freshwater	MFNXTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG*
Ga0007850_10000159	3300003783	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQ*
Ga0007811_10061053	3300003787	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPAVTEQSETPQ*
Ga0007811_10079753	3300003787	Freshwater	MFNFTHTTQELNLVIQSMEHKIRDMQELLGKMIAQAQAQAPKPEVQEAPKAE*
Ga0007865_10010485	3300003796	Freshwater	HTTQELNLVIQSMEHKIRDMQELLGKMIAQAQAQAPKPEVQEAPKAE*
Ga0007865_10253662	3300003796	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTEQSETPQ*
Ga0007846_10086633	3300003797	Freshwater	THSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007846_10126112	3300003797	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMIAQAQDQAPKPAQPVEQPAEQPAQQ*
Ga0007877_10063485	3300003814	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTEQSETXXXLXL*
Ga0007877_10116521	3300003814	Freshwater	FTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007878_10166042	3300003819	Freshwater	LVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007880_10252991	3300003827	Freshwater	NLVIQSLEHKIRDMTXXLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007829_101234221	3300004095	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQLKL
Ga0065173_10078884	3300004686	Freshwater	TTQELNLIIASLEHKIRDMQEMLNKLVLGAQAQVPKPEDQEQKPTE*
Ga0007804_10614461	3300004770	Freshwater	SLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007804_11349102	3300004770	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEAHVQSEETPQ
Ga0007827_100122843	3300004777	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPQPTEEPQ*
Ga0007827_100417481	3300004777	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQ*
Ga0007854_100007443	3300004806	Freshwater	MFKFEHTTQELNLIIASLEHKIRDMQEMLNKLVLGAQAQVPKPEDQEQKPTE*
Ga0007809_100459972	3300004807	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMIAQAQEQAPKPAQPVEQPAEQPAQQ*
Ga0007809_100741352	3300004807	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPLVQSEETPSQ*
Ga0007881_10354414	3300006072	Freshwater	NFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE*
Ga0007881_10523884	3300006072	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTEQSETPQLKL
Ga0007810_10693393	3300006101	Freshwater	MFNFTHSTQEVNLVIQALEHKIRDLTELLNKMVQNAQAQAPKPEVQEAPKAE*
Ga0007882_102682101	3300006104	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ*
Ga0007819_10588852	3300006105	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAQAPKPEAPVQSEETPQ*
Ga0007862_10170662	3300006108	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAATDASTEVQG*
Ga0007871_11129033	3300006110	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEETS
Ga0007848_10184901	3300006111	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKIIAQAQAQSQLQAQAPKPETTTDASTEVQG*
Ga0007857_10022574	3300006112	Freshwater	MFNFTHSTQEVNLVIQALEHKIRDLTELLNKMVQNAQAQAPKPEVKAETNANNTSQS*
Ga0007857_10343692	3300006112	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQ*
Ga0007857_10419142	3300006112	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPPTTEQTETPQ*
Ga0007816_10246652	3300006115	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKIIAQAQAQSQLQAQAPKPEAPVQSEETPQ
Ga0007824_10161712	3300006121	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTTDASTEVQS*
Ga0007824_10508692	3300006121	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQLIL
Ga0007855_10228595	3300006126	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKT*
Ga0007805_10899722	3300006127	Freshwater	HSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQGGFNPIRQ
Ga0114962_104274903	3300009151	Freshwater Lake	MFKFDHTTQELNLIIASLEHKIRDMQEMVAKLVAQAQTQLPKPETTEEQQ*
Ga0073936_101022047	3300009175	Freshwater Lake Hypolimnion	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPQPIEETPTQ*
Ga0114951_104995601	3300009502	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPQPIEETPAQ*
Ga0164296_10259734	3300013093	Freshwater	MFNFTHSTQELNLVIQSLEHKIKDMTELLNKMVAQAQAQLQAQAPKPETTTDASTEVQS*
Ga0164296_10465005	3300013093	Freshwater	STQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQS*
Ga0164296_12979982	3300013093	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPVIPDASTEVQG*
Ga0164297_100489024	3300013094	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQS*
Ga0214256_1059692	3300020685	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0214198_10020255	3300020710	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPVIPDASTEVQG
Ga0214198_10387411	3300020710	Freshwater	NFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0214255_10231072	3300020712	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPVIPDASTEVQN
Ga0214207_100328110	3300020716	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPE
Ga0214252_10215301	3300020720	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPETTTDASTEVQG
Ga0214249_10169422	3300020723	Freshwater	MFNFTHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ
Ga0214244_10517081	3300020724	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEETSPQ
Ga0214220_10275212	3300020726	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0214246_10097132	3300020727	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEEIPPQ
Ga0214170_10466032	3300020731	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMIAQAQEQAPKPQVTDASTEVQG
Ga0214174_1033613	3300021115	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQASKPETTEQSETPQ
Ga0214206_10029841	3300021131	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTDASTEVQG
Ga0214206_10376762	3300021131	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPQQTEEAQ
Ga0214175_10029549	3300021133	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ
Ga0214175_10037425	3300021133	Freshwater	THSTQELNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPQVTDASTEV
Ga0214167_10081784	3300021136	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTEQSETPQ
Ga0214165_10869752	3300021137	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPATTEQTETPQ
Ga0214166_10628371	3300021139	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKP
Ga0212088_100628152	3300022555	Freshwater Lake Hypolimnion	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPQPIEETPAQ
Ga0212088_101696603	3300022555	Freshwater Lake Hypolimnion	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPPVQSEETPPQ
Ga0256681_125247593	3300023311	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPEVQEAPKAE
Ga0208504_100004043	3300025358	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQ
Ga0208504_10123862	3300025358	Freshwater	MFNFTHSTQEVNLVIQALEHKIRDLTELLNKMVQNAQAQAPKPEVKAETNANNTSQS
Ga0208385_10345432	3300025363	Freshwater	MFNFTHSTQEVNLVIQALEHKIRDLTELLNKMVQNAQAQAPKPEVQEAPKAE
Ga0208505_10150873	3300025366	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKIIAQAQAQSQLQAQAPKPETTTDASTEVQGXGFNPIRQ
Ga0207957_10142862	3300025372	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQ
Ga0208738_100011541	3300025379	Freshwater	MFNFTHTTQELNLVIQSMEHKIRDMQELLGKMIAQAQAQAPKPEVQEAPKAE
Ga0208738_10027633	3300025379	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPAVTEQSETPQ
Ga0208871_10072953	3300025381	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMIAQAQDQAPKPAQPVEQPAEQPAQQ
Ga0208256_10058378	3300025382	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPLVQSEETPSQ
Ga0208250_10264762	3300025383	Freshwater	FNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0208257_10026731	3300025389	Freshwater	HETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPLVQSEETPSQ
Ga0208874_10323412	3300025396	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQXLIL
Ga0207955_10361432	3300025401	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAVTEQSETPQXLKL
Ga0208876_10038801	3300025402	Freshwater	FTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0208378_10303061	3300025407	Freshwater	HSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0208378_10350161	3300025407	Freshwater	STQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0208614_10074573	3300025413	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAQAPKPEAPVQSEETPQ
Ga0208877_10050035	3300025416	Freshwater	QELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0208877_10203731	3300025416	Freshwater	NLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0208500_10181242	3300025429	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPATTEQTETPQXLIL
Ga0208622_10245804	3300025430	Freshwater	FTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0208744_10908422	3300025450	Freshwater	NLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQG
Ga0208389_10726162	3300025470	Freshwater	STQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPAVTEQSETPQ
Ga0208379_10186291	3300025598	Freshwater	FNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0208388_10403302	3300025778	Freshwater	MFNFTHSTQEVNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE
Ga0208498_10304833	3300025785	Freshwater	FNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPAVTEQSETPQ
Ga0208873_10747972	3300025788	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKT
Ga0208872_100059241	3300025838	Freshwater	MFKFEHTTQELNLIIASLEHKIRDMQEMLNKLVLGAQAQVPKPEDQEQKPTE
Ga0209188_10128376	3300027708	Freshwater Lake	MFKFDHTTQELNLIIASLEHKIRDMQEMVAKLVAQAQTQLPKPETTEEQQ
Ga0209085_11181253	3300027741	Freshwater Lake	MFKFDHTTQELNLIIASLEHKIRDMQEMVAKLVAQAQTQLPKPETTEEQQXK
Ga0316219_10673522	3300031759	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTTDASTEVQ
Ga0316219_13390112	3300031759	Freshwater	MFNFSHSTQEVNLVIQSLEHKIRDLTELLNKMVAQAQAQAPKPAATDASTEVQG
Ga0316217_104027981	3300031813	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPQVTDASTEVQS
Ga0316225_10125821	3300032675	Freshwater	YFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ
Ga0316227_11617631	3300032677	Freshwater	FTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQAPKPPVQSEETPQ
Ga0316227_12262761	3300032677	Freshwater	MFKFTHETQELNLIIASLEHKIRDMQTLLNKMVAEAQAQAPKPP
Ga0316227_12359553	3300032677	Freshwater	MFNFTHSTQELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPETTTDAS
Ga0316227_12494171	3300032677	Freshwater	QELNLVIQSLEHKIRDMTELLNKMVAQAQAQSQLQAQAPKPEETKTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078139

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences