Metagenome / Metatranscriptome Family F078132

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078132
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	61 residues
Representative Sequence	MLRELAPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Number of Associated Samples	60
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.35 %
% of genes near scaffold ends (potentially truncated)	35.34 %
% of genes from short scaffolds (< 2000 bps)	69.83 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (78.448 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland (28.448 % of family members)
Environment Ontology (ENVO)	Unclassified (95.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (54.310 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1Ga0062386_1001455682 2Ga0116128_10164552 3Ga0116128_10369932 4Ga0116128_10987832 5Ga0116128_11170582 6Ga0116128_11961591 7Ga0116108_10379432 8Ga0116108_10972512 9Ga0116222_13485592 10Ga0116225_10153315 11Ga0116136_11222061 12Ga0116107_10197182 13Ga0116107_11607551 14Ga0116107_11753291 15Ga0116103_10259473 16Ga0116111_10406702 17Ga0116123_11972771 18Ga0116127_10346302 19Ga0116114_10654032 20Ga0116114_10879842 21Ga0116102_10152832 22Ga0116102_10452792 23Ga0116124_10353351 24Ga0116124_11071912 25Ga0116112_10721051 26Ga0116112_11895201 27Ga0116118_11083282 28Ga0116122_11243531 29Ga0116122_12148642 30Ga0116126_10968632 31Ga0116126_11949572 32Ga0116120_10437312 33Ga0116121_10194102 34Ga0116106_11027182 35Ga0116130_11432231 36Ga0116223_100969862 37Ga0116223_105579541 38Ga0074046_100320831 39Ga0074046_100381852 40Ga0074046_103064362 41Ga0136449_1036810861 42Ga0138559_10292452 43Ga0138574_11181251 44Ga0181533_10709331 45Ga0181533_11173781 46Ga0181527_11997461 47Ga0181524_101161193 48Ga0181524_102818571 49Ga0181518_100072986 50Ga0181538_101659641 51Ga0181538_106202511 52Ga0181526_110375321 53Ga0187856_12863451 54Ga0187849_12931691 55Ga0187848_100064803 56Ga0187854_101225832 57Ga0187854_101345621 58Ga0187854_102269142 59Ga0187853_105249001 60Ga0187850_100971342 61Ga0187850_101314981 62Ga0187850_104407512 63Ga0187850_105250772 64Ga0187891_11181922 65Ga0187868_11705071 66Ga0187865_12497222 67Ga0187865_12920611 68Ga0187888_12256762 69Ga0187874_100282901 70Ga0187881_103829321 71Ga0187885_104701582 72Ga0187867_106970831 73Ga0187862_101224413 74Ga0187772_101319692 75Ga0187771_100160772 76Ga0187771_116800191 77Ga0187796_11440042 78Ga0187798_10917272 79Ga0187798_13677411 80Ga0187798_17827082 81Ga0208689_10662041 82Ga0326728_101248763 83Ga0326728_102939701 84Ga0326727_1001113915 85Ga0371490_10016079 86Ga0371489_0226878_527_715 87Ga0314861_0000028_31075_31263 88Ga0314861_0000033_55460_55648 89Ga0314861_0000068_42570_42758 90Ga0314861_0000155_33505_33693 91Ga0314861_0000659_13402_13587 92Ga0314861_0000664_11247_11435 93Ga0314861_0000851_38665_38853 94Ga0314861_0001251_20755_20943 95Ga0314861_0001470_25437_25625 96Ga0314861_0001612_14164_14352 97Ga0314861_0001818_14117_14302 98Ga0314861_0005720_3012_3200 99Ga0314861_0011086_619_804 100Ga0314861_0011089_4758_4946 101Ga0314861_0013957_4160_4348 102Ga0314861_0023321_2591_2779 103Ga0314861_0029044_2428_2616 104Ga0314861_0031644_649_837 105Ga0314861_0056127_1145_1333 106Ga0314861_0085005_1433_1621 107Ga0314861_0097056_1102_1290 108Ga0314861_0164522_729_917 109Ga0314861_0182873_542_736 110Ga0314861_0323967_406_591 111Ga0371488_0025625_615_803 112Ga0371488_0105688_419_607 113Ga0371488_0344722_504_692 114Ga0326724_0141465_717_905 115Ga0326724_0327988_624_812 116Ga0326724_0403248_70_246
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1Ga0062386_1001455682 2Ga0116126_10968632 3Ga0116126_11949572 4Ga0116130_11432231 5Ga0116223_105579541 6Ga0326728_102939701
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1Ga0062386_1001455682 2Ga0116126_10968632 3Ga0116126_11949572 4Ga0116130_11432231 5Ga0116223_105579541 6Ga0326728_102939701
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 75.81% β-sheet: 0.00% Coil/Unstructured: 24.19%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01370	Epimerase	35.34
PF02374	ArsA_ATPase	18.10
PF08338	DUF1731	6.90
PF00149	Metallophos	2.59
PF00459	Inositol_P	2.59
PF00795	CN_hydrolase	1.72
PF02597	ThiS	1.72
PF13365	Trypsin_2	0.86
PF06182	ABC2_membrane_6	0.86
PF02591	zf-RING_7	0.86

Showing 1 to 10 of 25 entries

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COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	6.90
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	1.72
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	1.72
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.86
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.86
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.86
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.86
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	General function prediction only [R]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.45 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.48 %
Unclassified	root	N/A	21.55 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.86 %

Name	Rank	Taxonomy	Distribution
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	9.48 %
Unclassified	root	N/A	21.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.21 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.21 %
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9.48 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.21 %
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
Unclassified	root	N/A	21.55 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.21 %
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.86 %
Unclassified	root	N/A	21.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.21 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.86 %
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Unclassified	root	N/A	21.55 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.21 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.86 %
bacterium HR08	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR08	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	0.86 %
Unclassified	root	N/A	21.55 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_100145568	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300009518\|Ga0116128_1016455	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
3300009518\|Ga0116128_1036993	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300009518\|Ga0116128_1098783	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300009518\|Ga0116128_1117058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300009518\|Ga0116128_1196159	Not Available	568	Open in IMG/M
3300009519\|Ga0116108_1037943	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300009519\|Ga0116108_1097251	Not Available	893	Open in IMG/M
3300009521\|Ga0116222_1348559	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300009524\|Ga0116225_1015331	All Organisms → cellular organisms → Bacteria	4044	Open in IMG/M

Showing 1 to 10 of 115 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	55.17%
Terrestrial	Environmental → Terrestrial	44.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	55.17%
Peat	Environmental → Terrestrial → Peat	9.48%
Soil	Environmental → Terrestrial → Soil	35.34%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	6.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	55.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	29.31%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	26.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	29.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	28.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.03%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.76%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	9.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	28.45%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	24.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	18.10%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.59%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M

Showing 1 to 10 of 60 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062386_1001455682	3300004152	Bog Forest Soil	MLRELAPLLRKLKPPRTRSTKHLHNAAIEVLEAMRTVLDETIEWLRKEGRSEAELKRIRVED*
Ga0116128_10164552	3300009518	Peatland	MLRELTPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116128_10369932	3300009518	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVES*
Ga0116128_10987832	3300009518	Peatland	MLRELAPLLRRFKLPRTRSTKHLRNAAIEFLEALRAVLDETIERLRKEGRSEAELKRIRVEG*
Ga0116128_11170582	3300009518	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116128_11961591	3300009518	Peatland	MLRQLAPLLRKLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKDGRSEAELKRIRVEG*
Ga0116108_10379432	3300009519	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116108_10972512	3300009519	Peatland	MLRELAPLLRRFKLPRTRSTKHLRNAAIELLEAMRAVLDETIERLRKEGRSEAELKRIRVEG*
Ga0116222_13485592	3300009521	Peatlands Soil	MLRELGPILSRLKPPRTRSAKHLRNAAIEFLEAMRVLLDETIAWLRKEGRSEAELKRIHVT*
Ga0116225_10153315	3300009524	Peatlands Soil	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAVRVLLDESIEWLRKEGRSEVELKRIRVSG*
Ga0116136_11222061	3300009547	Peatland	MLRQLAPLLRKLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116107_10197182	3300009548	Peatland	MLRELAPLLQRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116107_11607551	3300009548	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELK
Ga0116107_11753291	3300009548	Peatland	RELAPLLRRFKLPRTRSTKHLRNAAIEFLEALRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0116103_10259473	3300009615	Peatland	LLQRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116111_10406702	3300009616	Peatland	MWRELAPLLRRFKLPRTRSTKHLRNAAIEFLEALRAVLDETIERLRKEGRSEAELKRIRVEG*
Ga0116123_11972771	3300009617	Peatland	MWRELATLLRRFKLPRTRSTKHLRNAAIELLEAMRAVLDETIERLRKEGRSEAELKRIRVED*
Ga0116127_10346302	3300009618	Peatland	MLRELAPLLQRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVES*
Ga0116114_10654032	3300009630	Peatland	MLRELGPLLSRFKPPRTRSTKHLRNAAIEVLEAMRTLLDESIEWLRKEGRSEAELKRIHVSG*
Ga0116114_10879842	3300009630	Peatland	MLRELGPILSRLKPPRTRSTKHLRNAGIEFLEAMRALLDETIEWLRKEGRSDAELKRIHVSG*
Ga0116102_10152832	3300009632	Peatland	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRTLLDESIEWLRKEGRSEAELKRIHVSG*
Ga0116102_10452792	3300009632	Peatland	MLRELGPILSRLKPPRTRSAKHLHNAAIEVLEAMRAILDETIEWLRKEGRSEAELKRIRVEE*
Ga0116124_10353351	3300009634	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEA
Ga0116124_11071912	3300009634	Peatland	MLRELAPLLRRFKLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116112_10721051	3300009636	Peatland	MLREFAPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116112_11895201	3300009636	Peatland	EIPSCAVWMLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116118_11083282	3300009637	Peatland	MLRELAPLLRKLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116122_11243531	3300009639	Peatland	MLRELGPLLSRLKPPRTRSAKHLRNAPIDVLEAMRTLLDESIEWLRKEGRSEAELKRIHVSG*
Ga0116122_12148642	3300009639	Peatland	MLRELGPILSRLKPPRTRSAKHLRNAAIEFLEAMRVLLDETIEWLRKEGRSEAELKRIRVEG*
Ga0116126_10968632	3300009640	Peatland	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRTLLDESIEWLRKEGR
Ga0116126_11949572	3300009640	Peatland	MWRELAPLLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEA
Ga0116120_10437312	3300009641	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRSVLDETIEWLRKDGRSEAELKRIRVEG*
Ga0116121_10194102	3300009644	Peatland	MLRELGPILSRFKPPRTRSTKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0116106_11027182	3300009645	Peatland	MLRELGPILSRLKPPRTRSAKHLRNAAIEFLEAMRVLLDETIEWLRKEGRSEAELKRIRVT*
Ga0116130_11432231	3300009762	Peatland	LSRLKPPRTRSAKHLRNAAIEFLEAMRVLLDETIEWLRKEGRSEAELKRIRVT*
Ga0116223_100969862	3300009839	Peatlands Soil	MLRELAPILSRLKPPRTRSTKHLRNAAIEVLEAMRALLDETIEWLRKEGRSEAELKRIRVSG*
Ga0116223_105579541	3300009839	Peatlands Soil	SAGIPSCAVWMLRELGPLLRRLKPPRTRSAKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0074046_100320831	3300010339	Bog Forest Soil	MWMLRELAPLLRKLKPPRTRSTKHLHNAAIEVLEAMRTVLDETIEWLRKEGRSEAELKRIRVED*
Ga0074046_100381852	3300010339	Bog Forest Soil	MLRELAPLLRRLKLPRTRSAKHLRNAAIELLEAIRAALDETIEWLRKEDRSEAELKRIRVEG*
Ga0074046_103064362	3300010339	Bog Forest Soil	MLRELAPLLRKLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKEGRSEAELKRIRVEG*
Ga0136449_1036810861	3300010379	Peatlands Soil	MLRELGPLLRRLKPPRTRSAKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0138559_10292452	3300011074	Peatlands Soil	PSCAVWMLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAVRVLLDESIEWLRKEGRSEVELKRIRVSG*
Ga0138574_11181251	3300011076	Peatlands Soil	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAVRVLLDESIEWLRKEGRSE
Ga0181533_10709331	3300014152	Bog	LRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0181533_11173781	3300014152	Bog	MLRELAPLLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG*
Ga0181527_11997461	3300014153	Bog	MLRELAPLLRRLGPPRTRSAKHLRNAAIEVLEAMRAFLDETIEWLRKDGRSEAELKRIRVEG*
Ga0181524_101161193	3300014155	Bog	VWMLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRTLLDESIEWLRKEGRSEAELKRIHVSG*
Ga0181524_102818571	3300014155	Bog	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0181518_100072986	3300014156	Bog	MLRELGPLLSRFKPPRTRSTKHLRNAAIEVLEAMRAMLDESIEWLRKEGRSEAELKRIHVSG*
Ga0181538_101659641	3300014162	Bog	MLREFAPLLRKLKRPHTRSTKHLRNAAIEVLEAMRVVLDETIEWLRKDGR
Ga0181538_106202511	3300014162	Bog	MLRELGPLLSRFKPPRTRSTKHLRNAAIEVLEAMRALLDESIEWMRKEGRSEAELKRIHVSG*
Ga0181526_110375321	3300014200	Bog	ILSRFKPPRTRSTKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG*
Ga0187856_12863451	3300017925	Peatland	RELAPLLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187849_12931691	3300017929	Peatland	PSCAVWMLREMAPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVED
Ga0187848_100064803	3300017935	Peatland	MLRELTPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187854_101225832	3300017938	Peatland	ESAEIPSCAVWMLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187854_101345621	3300017938	Peatland	IPSCAVWMLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVES
Ga0187854_102269142	3300017938	Peatland	LQRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187853_105249001	3300017940	Peatland	RRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187850_100971342	3300017941	Peatland	GPILSRLKPPRTRSAKHLHNAAIEVLEAMRAILDETIEWLRKEGRSEAELKRIRVEE
Ga0187850_101314981	3300017941	Peatland	IPSCAVWMLRELAPLLRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187850_104407512	3300017941	Peatland	APLLQRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0187850_105250772	3300017941	Peatland	APLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVED
Ga0187891_11181922	3300017996	Peatland	AVWMWRELAPLLRRFKLPRTRSTKHLRNAAIEFLEALRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187868_11705071	3300018002	Peatland	FKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187865_12497222	3300018004	Peatland	WMLREMAPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVED
Ga0187865_12920611	3300018004	Peatland	LRRLKPPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187888_12256762	3300018008	Peatland	WMWRELAPLLRRFKLPRTRSTKHLRNAAIEFLEALRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187874_100282901	3300018019	Peatland	LLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187881_103829321	3300018024	Peatland	LKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDGRSEAELKRIRVED
Ga0187885_104701582	3300018025	Peatland	SAGIPSCAVWMLRELAPLLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0187867_106970831	3300018033	Peatland	TCAVWMLRELGPILSRLKPPRTRSAKHLRNAAIEFLEAMRVLLDETIEWLRKEGRSEAELKRIRVT
Ga0187862_101224413	3300018040	Peatland	APLLRKLKRPHTRSTKHLRNAAIEVLEAMRVVLDETIEWLRKDGRSEAEMKRIRVED
Ga0187772_101319692	3300018085	Tropical Peatland	MLRELSPLLSRLKPPRTRSAKHLRNAAIEFLEAMRALLDETIEWLRKQEERSESELKRIQVS
Ga0187771_100160772	3300018088	Tropical Peatland	MLRELAPLLQRLKPPRSRSAKHFRNAAIEVLEALRVLLDETIEWLRKEGQSEAELKRIHISG
Ga0187771_116800191	3300018088	Tropical Peatland	GIPSCAEWMLRELAPLVRRLTPRHTRSTKHLRNAAIEVLEAMRTLLDETIEWLRKDSRTEAELKRIHVSG
Ga0187796_11440042	3300019264	Peatland	AVWMLRELAPLLQRLKPRRTGSAKHFRNAAIEVLEALRVLLDETIEWLRKEGQSEAELKRIHVSG
Ga0187798_10917272	3300019275	Peatland	RELAPLVRRLTPRHTRSTKHLRNAAIEVLEAMRALLDETIEWLRKDSRSEAELRRIRVE
Ga0187798_13677411	3300019275	Peatland	RFKPPRTRSANHLRNAAIEVLEAMRALLDEAIERLRKEGRSEAELKRIRVEG
Ga0187798_17827082	3300019275	Peatland	WMLRELAPLLKRLKPRHTRSTKHLRYAAIEVLEAMRALLDETIEWLRKDGRSEAELKRIRVE
Ga0208689_10662041	3300025459	Peatland	PLLRRFKLPRTRSTKHLRNAAIEFLEAMRAVLDETIERLRKEGRSEAELKRIRVEG
Ga0326728_101248763	3300033402	Peat Soil	MLRELTPLLRRLKPPRTRSAKHFRNAAIEVLEALRVLLDETIEWLRKEGQAEAELKRIHVSG
Ga0326728_102939701	3300033402	Peat Soil	PLLQRLKPPRSRSTKHLRNATIEVLEAVRAVLDETIEWLRKDTRSEVELKRIRVE
Ga0326727_1001113915	3300033405	Peat Soil	MLRELGPLLSRLKPPRTRSTKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG
Ga0371490_10016079	3300033561	Peat Soil	MLRELGPLLRRFKPPRTRSAKHLRNAAIEVLEAMRALLDEAIERLRKEGRSEGEMKRIHVSG
Ga0371489_0226878_527_715	3300033755	Peat Soil	MLRELGPLLSKLKPPRTRSAKHLRNAAIEVLEAMRAMLDETIEWLRKEGRSEAELKRIKVSG
Ga0314861_0000028_31075_31263	3300033977	Peatland	MLRELAPLLQRLKRPRTRSAKHFRNAAIEVLEALRVLLDEAIERLRKEGKSEAELKRIRVDG
Ga0314861_0000033_55460_55648	3300033977	Peatland	MLRELPPLLRRLKLPRSRSTKHLRNAAIEVLEALRAVLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0000068_42570_42758	3300033977	Peatland	MLRELAPLLRRIKLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDNRSEAELKRIRVEG
Ga0314861_0000155_33505_33693	3300033977	Peatland	MLRELAPLLLKLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0000659_13402_13587	3300033977	Peatland	MLRELAPLLRRLKLPRTRSTKHLRNAVIEVLEAMRAVLDETIEWLRKDARSEAELKRIRV
Ga0314861_0000664_11247_11435	3300033977	Peatland	MLRELAPLLRRLKPRHTRSTKHLRNAAIEVLEAMRALLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0000851_38665_38853	3300033977	Peatland	MLRELAPLLRRFKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDARSEAELKRIRVEG
Ga0314861_0001251_20755_20943	3300033977	Peatland	MLREMAPLLRRLKLPRTRSTKHLRNAVIEVLEAMRAVLDETIEWLRKDARSEAELKRIRVEG
Ga0314861_0001470_25437_25625	3300033977	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIELLEAMRAVLDETIEWLRKDGRSEAELKRIRVEG
Ga0314861_0001612_14164_14352	3300033977	Peatland	MLRELGPLLRRFKLPRTRSAKHLRNAAIEVLEAMRALLDEAIEGLRKEGRSEAELKRIKVSG
Ga0314861_0001818_14117_14302	3300033977	Peatland	MLRELAPLLKRLKPRHTRSTKHLRNAAIEVLEAMRDLLDETIEWLRKDARSEEELKRIRV
Ga0314861_0005720_3012_3200	3300033977	Peatland	MLRELVPLLRRLTPRHTRSTKHLRNAAIEVLEAMRALLDETIEWLRKDSRSEAELKRIHVSG
Ga0314861_0011086_619_804	3300033977	Peatland	MLRELAPLLKRLKPRHTRSTKHLRYAAIEVLEAMRALLDETIEWLRKDGRSEAELKRIRV
Ga0314861_0011089_4758_4946	3300033977	Peatland	MLRELAPLLRKLKPSRTRSTKHLRNAAIEVLEAMRALLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0013957_4160_4348	3300033977	Peatland	MLRELAPLLRRFKLPRTRSTKHLHNAAIEVLEAMRAVLDETIEWLRKENRSEAELKRIRVEG
Ga0314861_0023321_2591_2779	3300033977	Peatland	MLRQLAPVLRRLKPPRTRSTKHLRNAAIEVLEAVRAVLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0029044_2428_2616	3300033977	Peatland	MLRELAPLLRRLKPPRTRSTKHLRNAAIELLEAMRAVLDETIEWLRKDRRSEAELKRIRVEG
Ga0314861_0031644_649_837	3300033977	Peatland	MLRELAPLLRRFKLPRTRSTKHLRNAAIEVLEAMRAVLEESIEWLRKENRSEAELKRIRVEG
Ga0314861_0056127_1145_1333	3300033977	Peatland	MLRELVPLFRRLTPRHTRSTKHLRNAAIEVLEAMRALLDETIEWLRKDGRSEAELKRIHVSG
Ga0314861_0085005_1433_1621	3300033977	Peatland	MLRELAPLLQRLRLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKENRSEAELKRIRVEG
Ga0314861_0097056_1102_1290	3300033977	Peatland	MLRELAPLLRRFKLPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKEGRSEAELKRIRVEG
Ga0314861_0164522_729_917	3300033977	Peatland	MLRELGPLLRRFKPPRTRSAKHLRNAAIEVLEAMRVLLDEAIERLRKEGRSEAELKRIKVSG
Ga0314861_0182873_542_736	3300033977	Peatland	VWILRELSPLLRRLKPPRTRSTKHLRNAAIEVLEAMRAVLDETIEWLRKDRRSEAELKRIRVEG
Ga0314861_0323967_406_591	3300033977	Peatland	MLRELVPLLKRLKPRHTRSTKHLRYAAIEVLEAMRALLDETIEWLRKDGRSEAELKRIRV
Ga0371488_0025625_615_803	3300033983	Peat Soil	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAMRALLDESIEWLRKEGRSEAELKRIHVSG
Ga0371488_0105688_419_607	3300033983	Peat Soil	MLRELGPLLSRLKPPRTRSAKHLRNAAIEVLEAVRALLDESIEWLRKEGRSEAELKRIRVSG
Ga0371488_0344722_504_692	3300033983	Peat Soil	MLQELAPLLRRFKPRHTRSTKHLRNAAIEVLEAMRAVLDESIEWLRKDGRSEAELKRIRVEG
Ga0326724_0141465_717_905	3300034091	Peat Soil	MLRELAPLLRRLGPPRTRSAKHLRNAAIEVLEAMRALLDETIEWLRKDGRSEAELKRIHVSG
Ga0326724_0327988_624_812	3300034091	Peat Soil	MLRELGPLLSRFKPPRTRSTKHLRNAAIEVLEAMRAMLDESIEWLRKEGRSEAELKRIHVSG
Ga0326724_0403248_70_246	3300034091	Peat Soil	LAPLLRKLKPPRTRSTKHLRNAAIELLEALRAVLDETIEWLRKEGRSEAELKRIRVEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078132

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences