Basic Information | |
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Family ID | F077957 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 117 |
Average Sequence Length | 46 residues |
Representative Sequence | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTEPLVVYGSR |
Number of Associated Samples | 74 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 79.49 % |
% of genes near scaffold ends (potentially truncated) | 25.64 % |
% of genes from short scaffolds (< 2000 bps) | 81.20 % |
Associated GOLD sequencing projects | 70 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (55.556 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.949 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.915 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (30.769 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 57.45% β-sheet: 2.13% Coil/Unstructured: 40.43% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Terrestrial Agricultural Soil Sub-Biocrust Soil Soil Groundwater Sand Soil Tabebuia Heterophylla Rhizosphere Arabidopsis Thaliana Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Agave Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1031224841 | 3300000559 | Soil | MSGLTLRVLVGLAAGALVLAFVASLALISSQGASSVSGEPLIVYG |
F14TB_1006525952 | 3300001431 | Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTEPLVVYGSR* |
JGI25406J46586_1000165211 | 3300003203 | Tabebuia Heterophylla Rhizosphere | MSGLTVRALAAMAAGALVLAFIASLILVSSQNASSVSTRPLVVYGSR* |
JGI25407J50210_100147422 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLFIVSSQNASSVSTEPLVVYGSR* |
JGI25407J50210_100285332 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLALVSSQNASSVSTKPLVVYGSR* |
JGI25407J50210_100417862 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR* |
JGI25407J50210_100501112 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR* |
JGI25407J50210_100777002 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRVLAALAAGALVLAFVSSLVLVSSQSASSVSTKPLVVYGSR* |
JGI25407J50210_100787481 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSGLTLRVLAALAAGALVLAFVASLVLVSSQSASSVPTRPLVQYGSR* |
JGI25407J50210_100844012 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MTGLTLRLLAAIAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR* |
JGI25407J50210_100996752 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MTGLTLRVLAALAAGALVLAFVTSLVLVSSQSASSVSTTPLVQYGSR* |
Ga0058689_100424822 | 3300004016 | Agave | MTGLTLRVLAALAAGALVLAFVSSLVLVSSQSGSSVSTRPLVQYGSR* |
Ga0063356_1009665591 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MTGLTLRLLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSRQP* |
Ga0058697_101681921 | 3300005562 | Agave | MTGLTLRLLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR* |
Ga0058697_102464412 | 3300005562 | Agave | MSGLTLRLLVAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR* |
Ga0058697_103021392 | 3300005562 | Agave | MTGLTLRVLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR* |
Ga0058697_103614722 | 3300005562 | Agave | MTGLTLRLLAAIAAGALVLAFVASLVLISSQGASSVSGEPLVVYGSR* |
Ga0058697_104842771 | 3300005562 | Agave | MSGLTLRALAALAAGALVLAFVASLALVSSQNASSVSTRPLVVYGSR* |
Ga0081455_100312915 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLFIVSSQNASSVSTKPLVVYGSR* |
Ga0081538_100026973 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLVLVSSQNATSVSSKPLVVYGSR* |
Ga0081538_100052564 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFIASLVLVSSQNASSVSTKPLVVYGSR* |
Ga0081538_100464932 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSGLTLRALAALAAGALVLAFVASLFIVSSQNASSVSTRPLVVYGSR* |
Ga0081538_101663022 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSGLTLRLLVALAGGALVLAFVASLVLVASQDASSVSSEPLIVYGSR* |
Ga0081539_100890362 | 3300005985 | Tabebuia Heterophylla Rhizosphere | MTGLTLRFLVAIAVGALVLAFVASLALISSQSASSVSGEPLVVYGSR* |
Ga0075421_1000475803 | 3300006845 | Populus Rhizosphere | MSGLTLRALAALAAGALVLAFVASLFLVSSQNASSVSTEPLVVYGSR* |
Ga0075431_1006618042 | 3300006847 | Populus Rhizosphere | MSGLTLRALAALAAGALVLAFVASLFLVSSQNASSVSTKPLVVYGSR* |
Ga0079218_107019522 | 3300007004 | Agricultural Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASTVSSKPLVVYGSR* |
Ga0111539_117563592 | 3300009094 | Populus Rhizosphere | MSGLTLRALAAMAAGALVLAFVASLILVSSQNASSVSTRPLVVYGSR* |
Ga0114129_103827722 | 3300009147 | Populus Rhizosphere | MSGLTMRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR* |
Ga0105092_108625452 | 3300009157 | Freshwater Sediment | MRALAALAAGALVLAFVASLVLVSSQNASSVSTEPLVVYGSR* |
Ga0126307_112307082 | 3300009789 | Serpentine Soil | MSGLTLRALAALAAGALVLAFVASLAIVSSQNASSVSTRPLVVYGSR* |
Ga0126307_117871872 | 3300009789 | Serpentine Soil | MTGLTLRLLAAIAAGALVLAFVASLVLISSQGASSVSGEPLIVYGSR* |
Ga0105080_10482842 | 3300009797 | Groundwater Sand | MSGLTLRVLAALAAGALVLAFVASLVLVSSQSASSVSTRPLVQYGSR* |
Ga0105060_1015082 | 3300009798 | Groundwater Sand | MSGLTLRVLAALAAGALVLAFVTSLVLVSSQSASSVSTRPLVQYGSR* |
Ga0105079_10452302 | 3300009805 | Groundwater Sand | MSGLTLRVLAALAAGALVLAFVTSLVLVSSQSASSVSTRPVVQYGSR* |
Ga0105061_10330061 | 3300009807 | Groundwater Sand | MTGLTIRVLAALSAGALILAFISALVLVSSQGASSVSTEPLLVYGSR* |
Ga0105089_11001302 | 3300009809 | Groundwater Sand | MSGLTVRVLAALAAGALVLAFVTSLALVSSQSASSQSTRPLLQYGSR* |
Ga0105070_10757721 | 3300009815 | Groundwater Sand | MSGLTVRVLAALAAGALVLAFVTSLALVSSQRASSQSTRPLLQYGSR* |
Ga0105076_10279532 | 3300009816 | Groundwater Sand | MNGLTMRILAALAAGALILAFVSSLVLVSSQGASSVSTEPLLVYGSR* |
Ga0126313_100098174 | 3300009840 | Serpentine Soil | MSGLTLRVLAALAAGALVLAFVSSLALVSSQSASSVSTKPLVVYGSR* |
Ga0126313_100119912 | 3300009840 | Serpentine Soil | MSGLTLRALAVLAAGALVLAFVASLFIVSSQNASSVSTKPLVVYGSR* |
Ga0105074_10195542 | 3300010029 | Groundwater Sand | MSGLTLRVLAALAAGALVLAFVTSLVPVSSQSASSVSTRPLVQYGSR* |
Ga0126315_111988051 | 3300010038 | Serpentine Soil | MSGLTLRVLAALAAGALVLAFVASLVLVSSQNASSVSSRPLVVYGSR* |
Ga0126312_111195111 | 3300010041 | Serpentine Soil | MSGLTLRALAALAAGALVLAFVASLAIVSSQNASSVSTRPL |
Ga0126312_114313162 | 3300010041 | Serpentine Soil | VLAALAAGALVLAFVSSLALVSSQSASSVSTKPLVVYGSR* |
Ga0126310_102867071 | 3300010044 | Serpentine Soil | MSGLTLRALAALAAGALVLAFVASLAIVSSQNASSVSTRPLVVY |
Ga0126377_119657102 | 3300010362 | Tropical Forest Soil | MSGLTMRTLAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR* |
Ga0120192_101523602 | 3300012021 | Terrestrial | MSGLTLRVLAALAAGALVLAFVSSLVLVSSQTATSVSTRPLVRYGSR* |
Ga0137369_100427952 | 3300012355 | Vadose Zone Soil | MSGLTMRILAALAAVALILAFVSSLVLVTSQGASSVSTEPLLVYGSR* |
Ga0137369_101796982 | 3300012355 | Vadose Zone Soil | MTGLTIRVLAALSAGALILAFISALVLVSSPGASSVSTEPLLVYGSR* |
Ga0162651_1000288611 | 3300012938 | Soil | MSGLTLRALAALAAGALVLAFVASLFLVASQNASSVSTEPLVVYGSR* |
Ga0182000_100052503 | 3300014487 | Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSSRPLVVYGSR* |
Ga0182000_103758931 | 3300014487 | Soil | MSGLTLRLLVAIAAGALVLAFVASLALISSQSASSVSGQPLIVY |
Ga0182000_106447262 | 3300014487 | Soil | SRMSGLTLRALATLAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR* |
Ga0190266_101929402 | 3300017965 | Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0190266_105112962 | 3300017965 | Soil | MTGLTLRFLVAIAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR |
Ga0190266_109131952 | 3300017965 | Soil | MSGLTLRLLVGLAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR |
Ga0184608_104478152 | 3300018028 | Groundwater Sediment | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVY |
Ga0184634_100479932 | 3300018031 | Groundwater Sediment | MSGLTLRVLAALAAGALVLAFVTSLVLVSSQSASSVSTRPLVQYGSR |
Ga0184638_10984432 | 3300018052 | Groundwater Sediment | MSGLTLRVLAALAAGALVLAFVSSLVLVSSQSASSVSTRPLVQYGSR |
Ga0184638_12589451 | 3300018052 | Groundwater Sediment | MSGLTMRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0184632_103148712 | 3300018075 | Groundwater Sediment | PMSGLTLRVLAGLAVGALVLAFVASLVLVSSQGASSVSTEPLIVYGSR |
Ga0184609_100014791 | 3300018076 | Groundwater Sediment | GLAVGALVLAFVASLVLVSSQGASSVSTEPLIVYGSR |
Ga0184609_100180093 | 3300018076 | Groundwater Sediment | MSGLKLRVLVGLAVGALVLAFVASLVLVSSQGASSVSTEPLIVYGSR |
Ga0184625_102688872 | 3300018081 | Groundwater Sediment | MSGLTLRALAALAAGALVLAFVASLFLVSSQNASSVSTEPLVVYGSR |
Ga0190269_100440962 | 3300018465 | Soil | MSGLTLRALAALAAGALVLAFVASLFIVSSQNASSVSTKPLVVYGSR |
Ga0190269_113197581 | 3300018465 | Soil | PPVAPVGILRPTSPTRSRMSGLTLRTLAALAAGALVLAFVASLVLVSSQNASSVSTRSLVVYGSR |
Ga0190269_113588561 | 3300018465 | Soil | PRRSRMSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0190268_100218012 | 3300018466 | Soil | MTGLTLRLLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR |
Ga0190268_117243521 | 3300018466 | Soil | RMSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR |
Ga0190270_123584131 | 3300018469 | Soil | MSGLTLRALVALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0190274_134968701 | 3300018476 | Soil | RALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0190264_101425172 | 3300019377 | Soil | MSGLTLRVLAGLAVGALVLAFVASLVLVSSQGASSVSSEPLIVYGSR |
Ga0190264_108551772 | 3300019377 | Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSNEPLVVYGSR |
Ga0190267_102957392 | 3300019767 | Soil | MSGLTLRVLVGLAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR |
Ga0190267_110044592 | 3300019767 | Soil | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR |
Ga0210378_100033455 | 3300021073 | Groundwater Sediment | MSGLTVRVLAALAAGALVLAFVTSLALVSSQSASSQSTRPLLQYGSR |
Ga0210381_102742532 | 3300021078 | Groundwater Sediment | TLRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0193737_10613222 | 3300021972 | Soil | MSGLTLRVLAGLAVGALVLAFVASLVLVSSQGASSVSTEPLIVYGSR |
Ga0209896_10263951 | 3300027006 | Groundwater Sand | LAALAAGALVLAFVSSLVLVSSQSASSVSTRPLVQYGSR |
Ga0209845_10019402 | 3300027324 | Groundwater Sand | MSGLTLRVLAALAAGALVLAFITSLVLVSSQSASSVSTRPLVQYGSR |
Ga0209842_10448381 | 3300027379 | Groundwater Sand | NGLTMRILAALAAGALILAFVSSLVLVSSQGASSVSTEPLLVYGSR |
Ga0209887_10221062 | 3300027561 | Groundwater Sand | MNGLTMRILAALAAGALILAFVSSLVLVSSQGASSVSTEPLLVYGSR |
Ga0209795_100371192 | 3300027718 | Agave | MTGLTLRLLAAIAAGALVLAFVASLVLISSQGASSVSGEPLIVYGSR |
Ga0209795_100954522 | 3300027718 | Agave | MTGLTLRVLAALAAGALVLAFVSSLVLVSSQSSSSVSTRPLVQYGSR |
Ga0209461_100530692 | 3300027750 | Agave | MSGLTLRALAALAAGALVLAFVASLALVSSQNASSVSTRPLVVYGSR |
Ga0209461_100877662 | 3300027750 | Agave | MSGLTLRLLVAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR |
Ga0209461_101068762 | 3300027750 | Agave | MTGLTLRLLAAIAAGALVLAFVASLVLISSQGASSVSGEPLVVYGSR |
Ga0209574_100958932 | 3300027809 | Agave | MTGLTLRLLAAIAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR |
Ga0209574_103079991 | 3300027809 | Agave | MSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSSRPLVVYGSR |
Ga0209857_10834322 | 3300027957 | Groundwater Sand | TMRILAALAAGALILAFVSSLVLVSSQGASSVSTEPLLVYGSR |
Ga0307285_101796082 | 3300028712 | Soil | LAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0307319_100938661 | 3300028722 | Soil | ALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0307323_103147142 | 3300028787 | Soil | LRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0307305_100855203 | 3300028807 | Soil | AAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR |
Ga0307278_100093633 | 3300028878 | Soil | MSGLTLRTLAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0268240_100156501 | 3300030496 | Soil | MSGLTLRALAVLAAGALVLAFVASLVLVSSQNASSVSSRPLVVYGSR |
Ga0308187_101903741 | 3300031114 | Soil | RMTGLTLRFLVAIAAGALVLAFVASLALISSQGASSVSGEPLIVYGSR |
Ga0307408_1002486432 | 3300031548 | Rhizosphere | MSGLTLRALAALAAGALVLAFVASLALVSSQNASSVSTKPLVVYGSR |
Ga0307408_1015352751 | 3300031548 | Rhizosphere | ALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR |
Ga0307408_1017102122 | 3300031548 | Rhizosphere | MSGLTLRVLAALAAGALALAFVSSLALVSSQSASSVSTKPLVVYGSR |
Ga0307408_1019008091 | 3300031548 | Rhizosphere | RRSRMSGLTLRALAALAAGALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0307405_100049855 | 3300031731 | Rhizosphere | MSGLTLRALAVLAAGALVLAFVASLFIVSSQNASSVSTKPLVVYGSR |
Ga0307405_106586332 | 3300031731 | Rhizosphere | MTGLTLRLLVALAAGALVLAFVASLVLISSQGASSVSGEPLIVYGSR |
Ga0307405_115285682 | 3300031731 | Rhizosphere | MSGLTLRALAALAAGALVLAFVASLAIVSSQNASSVSTRPLVVYGSR |
Ga0307405_117671832 | 3300031731 | Rhizosphere | TLRALAALAAGALVLAFVASLAIVSSQNASSVSTRPLVVYGSR |
Ga0307413_105514631 | 3300031824 | Rhizosphere | TLRLLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR |
Ga0307410_102272251 | 3300031852 | Rhizosphere | MSGLTLRVLAALAAGALVLAFVSSLALVSSQSASSVSTKPLVVYGSR |
Ga0307410_110138031 | 3300031852 | Rhizosphere | LAALAAGALVLAFVASLFIVSSQNASSVSTKPLVVYGSR |
Ga0307410_115634751 | 3300031852 | Rhizosphere | TLRALAALAAGALVLAFVASLVLVSSQNASSVSTRPLVVYGSR |
Ga0307414_100122705 | 3300032004 | Rhizosphere | MTGLTLRLLAAIAAGALILAFVASLALISSQSASSVSGEPLIVYGSR |
Ga0307415_1002168122 | 3300032126 | Rhizosphere | MTGLTLRVLAALAAGALVLAFVASLVLVSSQSASSVPTRPLVQYGSR |
Ga0268251_100758912 | 3300032159 | Agave | MSGLTLRALAALAAGALVLAFVASLAIVSSQNASSVSTKPLVVYGSR |
Ga0268251_101669992 | 3300032159 | Agave | MTGLTLRLLAAIAAGALVLAFVASLALISSQGASSVSGEPLIVY |
Ga0334946_026422_762_905 | 3300034026 | Sub-Biocrust Soil | MSGLTLRALAALAASALVLAFVASLVLVSSQNASSVSTKPLVVYGSR |
Ga0334913_003510_2999_3142 | 3300034172 | Sub-Biocrust Soil | MTGLTLRVLAAIAAGALVLAFVASLALISSQSASSVSGEPLIVYGSR |
Ga0334913_007646_1842_1985 | 3300034172 | Sub-Biocrust Soil | MTGLTLRVLAALAAGALVLAFVSSLVLVSSQSGSSVSTRPLVQYGSR |
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