Metagenome Family F077755

Overview

Basic Information

• Family ID: F077755
• Family Type: Metagenome
• Number of Sequences: 117
• Average Sequence Length: 40 residues
• Representative Sequence: MITDVNPFVYSRPISPEEIVDRDDETEQLLKNAVGGHY
• Number of Associated Samples: 103
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 47.86 %
• % of genes near scaffold ends (potentially truncated): 98.29 %
• % of genes from short scaffolds (< 2000 bps): 94.02 %
• Associated GOLD sequencing projects: 96
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (89.744 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.821 % of family members)
• Environment Ontology (ENVO): Unclassified (32.479 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (48.718 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.73%
  β-sheet: 0.00%
  Coil/Unstructured: 77.27%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF08241	Methyltransf_11	9.40
PF01256	Carb_kinase	7.69
PF05014	Nuc_deoxyrib_tr	3.42
PF00248	Aldo_ket_red	2.56
PF00166	Cpn10	2.56
PF00842	Ala_racemase_C	1.71
PF07676	PD40	1.71
PF13541	ChlI	1.71
PF13361	UvrD_C	1.71
PF00486	Trans_reg_C	1.71

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	Nucleotide transport and metabolism [F]	7.69
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	7.69
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	3.42
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	2.56
COG0787	Alanine racemase	Cell wall/membrane/envelope biogenesis [M]	1.71
COG0799	Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits	Translation, ribosomal structure and biogenesis [J]	1.71
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	1.71
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.85
COG2124	Cytochrome P450	Defense mechanisms [V]	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.74 %
Unclassified	root	N/A	10.26 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.74 %
Unclassified	root	N/A	10.26 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.74 %
Unclassified	root	N/A	10.26 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	77.78 %
Unclassified	root	N/A	10.26 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.25 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.71 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %
Unclassified	root	N/A	10.26 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.61 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.85 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.42 %
Unclassified	root	N/A	10.26 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.71 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.85 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.85 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Unclassified	root	N/A	10.26 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	32.48 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.71 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.48 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.85 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.85 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.71 %
Unclassified	root	N/A	10.26 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.85 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.48 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.85 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.85 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.85 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.71 %
Unclassified	root	N/A	10.26 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.48 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.85 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.85 %
Microbacterium mangrovi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium mangrovi	0.85 %
Nocardioides soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides soli	1.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.85 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.71 %
Unclassified	root	N/A	10.26 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2067725002|GPICC_F5MS3JC01EWDBF	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510
2124908044|A5_c1_ConsensusfromContig2362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	987
2140918007|ConsensusfromContig3140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	986
2228664021|ICCgaii200_c0250087	Not Available	616
3300000363|ICChiseqgaiiFebDRAFT_11112424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1301
3300000363|ICChiseqgaiiFebDRAFT_11113999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1283
3300000890|JGI11643J12802_10537158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552
3300000890|JGI11643J12802_11683387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1984
3300005168|Ga0066809_10130149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	639
3300005339|Ga0070660_101882872	All Organisms → cellular organisms → Bacteria	510

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.50%
Host-Associated	Host-Associated	26.50%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.98%
Plants	Host-Associated → Plants	26.50%
Terrestrial	Environmental → Terrestrial	67.52%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.56%
Peat	Environmental → Terrestrial → Peat	1.71%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.95%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.85%
Roots	Host-Associated → Plants → Roots	1.71%
Sediment	Environmental → Aquatic → Sediment	3.42%
Soil	Environmental → Terrestrial → Soil	64.10%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Ice	Environmental → Aquatic → Freshwater → Ice	0.85%
Lake	Environmental → Aquatic → Freshwater → Lake	0.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.85%
Loam	Environmental → Terrestrial → Soil → Loam	8.55%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.98%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.13%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.98%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.71%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.56%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.85%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.42%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.56%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_02847490	2067725002	Soil	MIRDVNPFVYSRPVAPEDVVDREAEVRSLLHHAVGGHYVR
A5_c1_00553510	2124908044	Soil	VITDVNPFVYSRPISPEEIVDRDEETQQLLQCAVGGHYVRLY
A_all_C_00157460	2140918007	Soil	VITDVNPFVYSRPISPDEIIDRDEETQQLLQNAVGGHYVRLY
ICCgaii200_02500872	2228664021	Soil	MITDINPFVYSRPIAPDQIVDRDDETHALLKNAVGGHYVRLR
ICChiseqgaiiFebDRAFT_111124241	3300000363	Soil	MITDINPFVYSRPIAPDQIVDRDEETRALLKNAVGGHY
ICChiseqgaiiFebDRAFT_111139991	3300000363	Soil	MITDINPFVYSRPIAPDQIVDRDDETHALLKNAVGGHY
JGI11643J12802_105371581	3300000890	Soil	MIRDINPFVYSRPVSPEDVVDREAEVRSLLHDAVGGHY
JGI11643J12802_116833874	3300000890	Soil	MITDVNPFVYSRPISPEEIVDRDDETQQLLKHAVG
Ga0066809_101301493	3300005168	Soil	MITDVNPFIYSHPLAPDDIIDRDDETRELLTAAVGGHYVRLYAPRKYG
Ga0070660_1018828722	3300005339	Corn Rhizosphere	VITDVNPFIYSRPIEPDQIVDRDEETQALLKNAVGGHYVR
Ga0070660_1019480102	3300005339	Corn Rhizosphere	MLADINPFVYSHPLAPDEIIDRDEETRELLSHAVGGHYVR
Ga0070713_1004641743	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLTDTNPFIYSHPIAPDDVIDRDAETEQLLTAAVGGHFVRLYAPRKYGKTS
Ga0070698_1016466401	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIRDINPFVYSRPVSPEDVVDREAEVRSLLHDAVGGHYVRLYA
Ga0070672_1015454732	3300005543	Miscanthus Rhizosphere	VITDVNPFVYSRPIEPDQVVDRDDETEALLKNAVG
Ga0070686_1011566061	3300005544	Switchgrass Rhizosphere	MLVDVNPFVYSHPLGPGEIIDRDRETTELLANAVGGHFTRLY
Ga0070664_1019682933	3300005564	Corn Rhizosphere	MITDVNPFIYSHPLAPDDIIDRDDETRELLTAAVGGHYVRLYAPRKY
Ga0066702_106576112	3300005575	Soil	VITDVNPFIYSHPVDPEDVIDRDEETEKLLAQVVGGHFVRLYAPRKYGKTS
Ga0066654_106584392	3300005587	Soil	VLTDTNPFIYSHPIAPDDVIDRDAETGQLLAAAVGGHFVRL
Ga0070702_1008787392	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MITDVNPFVYSRPVAPEDVVDREDEVRRLLRDAVGGHYVRLYA
Ga0070702_1015949882	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VITDVNPFVYSRPIEPDQVVDRDDETEALLKNAVGGHYVRLYA
Ga0068861_1012309762	3300005719	Switchgrass Rhizosphere	MITDVNPFIYSHPIAPEDVIDRDEETKRLLTAAVGGHFVRL
Ga0066903_1045066332	3300005764	Tropical Forest Soil	MITDVNPFVYSRPVAPEDVVDREDEVRRLLRDAVGGHY
Ga0068860_1012563291	3300005843	Switchgrass Rhizosphere	LIVDVNPFVYSRPVAPEDVVDREDEVRRLLRDAVGGHYVRLY
Ga0068862_1013619392	3300005844	Switchgrass Rhizosphere	VITDANPFIYSRPIPPEDLIDRDNEAAELLRAAVGGHY
Ga0066652_1001265584	3300006046	Soil	MLTDTNPFIYSHPIAPDDVIDRDEETAKLLQWAVGGHYVRLFA
Ga0082029_13525991	3300006169	Termite Nest	MLGDGNPFVYSRPVAPEDVIDRERETEELLRLAIG
Ga0075367_100398871	3300006178	Populus Endosphere	MIRDINPFVYSRPVSPEDVVDREAEVRSLLHDAVGGHYV
Ga0068871_1003020093	3300006358	Miscanthus Rhizosphere	MVRFVGTVITDVNPFVYSHPIAPDDVIDRDDETRELLDAAIGG
Ga0079222_101278522	3300006755	Agricultural Soil	VLIDANPFIYSHPVAPDDVIDRDAETEQLLAAAVGGHFVRLYAPRKYGKTS
Ga0075428_1019962833	3300006844	Populus Rhizosphere	VITDVNPFVYSRPIGPEDVIDRDDETRKLLTSAVGGHY
Ga0105245_107803493	3300009098	Miscanthus Rhizosphere	MIQDVNPFVYSRPVPPEDVVDRDAEVADLLQHAVGG
Ga0105241_101170991	3300009174	Corn Rhizosphere	LFPHHLVRYFRTVLTDPNPFIYSHPIAPDDVIDRDAETRQLLAAAVGGHFVRLYAPRK
Ga0105242_117036402	3300009176	Miscanthus Rhizosphere	MITDVNPFVYSRPISPEEIVDRDDETEQLLKNAVGGHYVRL
Ga0126313_100192151	3300009840	Serpentine Soil	MITDVNPFIYSHPLSPEEIIDRNEETQELLRNVVGGHFVRLFAPRKYGKT
Ga0126315_108786001	3300010038	Serpentine Soil	MGAMITDVNPFVYSHPVAAEDVIDRDAETQALLKDVVGGHFVR
Ga0134125_102195653	3300010371	Terrestrial Soil	LVRYFRTMLTDTNPFIYSHPIAPDDVIDRDAETEQLLTAAVGGHFVRLY
Ga0136449_1026800151	3300010379	Peatlands Soil	MPALDVNPFIYSHPLSPEDVIDRDDETGALLQNALGGHYVRL
Ga0134127_120413563	3300010399	Terrestrial Soil	MLTDINPFVYSHPLAPDEIIDRDDETHELLAQAVGG
Ga0134123_102414311	3300010403	Terrestrial Soil	VITDVNPFIYSRPIEPDQIVARDEGTQALRKDAVGGHYVRL
Ga0137382_104590012	3300012200	Vadose Zone Soil	MITDVNPFIYSHPVAPEDIIDRDEETMELLRNAVGGHFVRLFAPRKYG
Ga0137376_116268542	3300012208	Vadose Zone Soil	VADVNPFVYSRPLAPEDVLDREPEVKQLLALAAGGHYVRLY
Ga0137360_117891472	3300012361	Vadose Zone Soil	VITDINPFVYSRPISPDEVIDRDDETHRLLQWAVGGHFV
Ga0157322_10366211	3300012490	Arabidopsis Rhizosphere	MVRWLGTVITDVNPFVYSRPLAPDDIIDRDEETHRLLTAAVGGHYVRLY
Ga0164299_107173832	3300012958	Soil	VITDVNPFVYSRPIEPDQIVDRDEETLALLKNAVGGHYVR
Ga0164302_101619391	3300012961	Soil	MLTDINPFIYSHPLAPDEIIDRDDETRALLEHAVGGHYV
Ga0164309_101554861	3300012984	Soil	VITDVNPFVYSRPIEPEQIVDRDEETQALLRHAVG
Ga0157378_125414882	3300013297	Miscanthus Rhizosphere	MITDVNPFIYSHPIAPEDVIDRDEETKRLLTAAVGGHFVRLYA
Ga0120127_100744301	3300013503	Permafrost	MPRMIQIDKTVIDQINPFIYSHPVEPEDVIDRDGETRKLLADVIGGHYVRLYAPRKY
Ga0120158_101357622	3300013772	Permafrost	VITDVNPFIYSHPVDPEDVIDRDEETEKLLAQVVGGHFVRL
Ga0120170_10858631	3300014823	Permafrost	MITDVNPFIYSHPVDPEDVIDRDEETEKLLAQVVGGHFVRLYAPRKYGKT
Ga0132256_1014538641	3300015372	Arabidopsis Rhizosphere	MIQDVNPFVYSRPVPPEDVVDRDAEVADLLQHAVGGHYV
Ga0132256_1020031012	3300015372	Arabidopsis Rhizosphere	MIEDVNPFVYSRPVPPEDVVDRDAEVADLLQHAVGG
Ga0132255_1004984522	3300015374	Arabidopsis Rhizosphere	VITDVNPFVYSRPIEPEQIIDRDEETQALLRHAVG
Ga0132255_1017026892	3300015374	Arabidopsis Rhizosphere	VITDVNPFIYSRPIEPDQIVDRDEETQALLKTAVGGH
Ga0136617_114924241	3300017789	Polar Desert Sand	MINDLNPFVYSHPLAAEDVIDRDDETHELLKKAIGG
Ga0184634_101037462	3300018031	Groundwater Sediment	MITDVNPFVYSRPISPEEIVDRDDETEQLLKNAVG
Ga0187788_103569371	3300018032	Tropical Peatland	VADANPFVYSRPVAPEDVLDREDEIAQLLSLAAGGHYV
Ga0187765_111853951	3300018060	Tropical Peatland	MLAAVSASTNPFVYSRPVSPDEVVDREEEVAQLLRWAAGGHYV
Ga0184624_103337112	3300018073	Groundwater Sediment	MITDINPFVYSRPISPEEIVNRDDETEQLLKNAVGG
Ga0184624_105104361	3300018073	Groundwater Sediment	MITDVNPFIYSHPLSPDDIIDRDEETQQLLTAAVGGHYVRLY
Ga0190274_104876371	3300018476	Soil	MIVDVNPFVYSRPVPPEDIVDREDEVRQLLRNAVGGH
Ga0193704_10517032	3300019867	Soil	MITDVNPFIYSRPISPEEIVDRDDETQQLLKHAVGGHYV
Ga0193741_11596381	3300019884	Soil	MITDVNPFVYSHPLDPEDVIDRDEEARELLTHAVGGHFVRL
Ga0213880_101780061	3300021953	Exposed Rock	MIEDVNPFVYSRPIDPEDILDRDEETRELLKRAVGGHYVR
Ga0222623_101364171	3300022694	Groundwater Sediment	MITDINPFVYSHPVAAEDVIDRDAETQELLKNVVG
Ga0247752_10166181	3300023071	Soil	MITDVNPFVYSRPIAPDQIVDRDEETQLLLKNAVG
Ga0247757_101535391	3300023097	Plant Litter	MIVDVNPFVYSRPVPPEDVVDRDAEVADLLRHAVGG
Ga0247794_100066481	3300024055	Soil	MITDVNPFVYSRPVAPEDVVDREDEVRRLLRDAVGG
Ga0247667_10722922	3300024290	Soil	VADVNPFVYSRPVAPENVLDREPEIRQLLSLASGGHY
Ga0209539_10970411	3300025764	Arctic Peat Soil	MITDVNPFVYSRPIPPDDVIDRDDETRELLRKIVGGH
Ga0209429_102650812	3300025864	Arctic Peat Soil	MITDVNPFVYSRPIPPDDVIDRDDETRELLRKVVGGHYVRL
Ga0207663_102583412	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VITDVNPFVYSRPIEPEQIVDRDEETQALLRHAVGGHYV
Ga0207649_115812821	3300025920	Corn Rhizosphere	VITDTNPFFYSRPIGPEDIIDRDEETAKLLQWAVGGHYVRL
Ga0207694_109961052	3300025924	Corn Rhizosphere	MLTDANPFIYSHPIAPDDVIDRDPETEQLLAAAVGGHFVR
Ga0207687_100303195	3300025927	Miscanthus Rhizosphere	MLTDTNPFIYSHPIAPDDVIDRDAETGQLLAAAVGGHFVRLYAPRKYGK
Ga0207700_102593984	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLTDTNPFIYSHPIAPDDVIDRDAETEQLLTAAVGGHFVRLYAPRKYG
Ga0207700_111392602	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLVDVNPFVYSHPLGPGEIIDRDRETTELLANAVGGHF
Ga0207686_103345831	3300025934	Miscanthus Rhizosphere	LIVDVNPFVYSRPVAPEDVVDREDEVRRLLRDAVG
Ga0207669_101635473	3300025937	Miscanthus Rhizosphere	MIQDVNPFVYSRPVPPEDVVDRDAEVADLLQHAVGGHY
Ga0207669_104030262	3300025937	Miscanthus Rhizosphere	VITDVNPFVYSRPIEPDQIVDRDEETLALLKNAVGGHY
Ga0207661_118636641	3300025944	Corn Rhizosphere	VITDVNPFVYSHPLSPEDIVDRDDETRELLRNVVG
Ga0207679_113144211	3300025945	Corn Rhizosphere	VITDVNPFVYSRPIEPDQVVDRDDETEALLKNAVGGHYVRLY
Ga0207703_118401981	3300026035	Switchgrass Rhizosphere	VITDVNPFVYSRPIEPDQIVDRDEETLALLKNAVGGHYVRLYA
Ga0207678_114708821	3300026067	Corn Rhizosphere	VITDVNPFVYSRPIEPDQIVDRDEETLALLKNAVG
Ga0207648_101981153	3300026089	Miscanthus Rhizosphere	MIEDVNPFVYSRPVPPEDVVDRDEEVEALLRSAVGG
Ga0209154_12432912	3300026317	Soil	VITDVNPFIYSHPVDPEDVIDRDEETEKLLAQVVGGHFV
Ga0207496_1006321	3300026785	Soil	MITDVNPFVYSRPIAPDQIVDRDEETQLLLKNAVGGH
Ga0209178_10408423	3300027725	Agricultural Soil	MLTDTNPFIYSHPIAPDDVIDRDAETGQLLAAAVGGHFVRLYA
Ga0209580_106200541	3300027842	Surface Soil	VIDQVNPFIYSHPVEPEDVIDRDDETRKLLADAVGGHFVRL
Ga0209814_105374031	3300027873	Populus Rhizosphere	MITDVNPFVYSRPIAPDQIVDRDEETQLLLKNAVGGHYV
Ga0209254_105764241	3300027897	Freshwater Lake Sediment	MPITDVNPFVYSHPLVPDDIIDRDEETEQLLRNVVGGH
Ga0247818_112063851	3300028589	Soil	MIVDVNPFVYSRPVPPEDIVDREDEVRQLLRNVVGGHYVRLY
Ga0247822_108835051	3300028592	Soil	MITDVNPFVYSRPISPEEIVDRDDETEQLLKNAVGGHY
Ga0247822_117484291	3300028592	Soil	VIEDVNPFVYSRPVPPEDVVDRDEDVRQLLRSAVGGHY
Ga0247820_110647131	3300028597	Soil	MIVDVNPFVYSRPVPPEDIVDRDDEVRLLLRHAIGGHY
Ga0307276_101592062	3300028705	Soil	VADVNPFVYSRPLAPEDVLDREPEIEQLLSLAAGGH
Ga0307316_103883561	3300028755	Soil	VAGDINPFVYSRPVAPEDVLDREPEIRQLLSLAGGG
Ga0307320_101943781	3300028771	Soil	MITDVNPFVYSRPISPEEIVDRDDETQQLLKHAVGGHYVRLY
Ga0307284_102166012	3300028799	Soil	VADVNPFVYSRPLAPEDVLDREPEIAQLLSLAAGGH
Ga0307305_100507091	3300028807	Soil	MITDINPFVYSRPIAPEQIVDRDEETQLLLKNAVG
Ga0307305_101902751	3300028807	Soil	MITDVNPFVYSHPVSAEEVIDRDGETQELLRNAVGGHFVRLYA
Ga0307292_101585211	3300028811	Soil	MITDVNPFVYSRPISPEEIVDRDDETQQLLKHAVGGHY
Ga0307292_104152061	3300028811	Soil	VAGDINPFVYSRPVAPEDVLGREPEIRQLLSLAGGGHYVRHYA
Ga0247825_112189423	3300028812	Soil	VIVQTNPFVYSRPLSPEDVIDRDAEVGELLRLAVGGHY
Ga0307304_104299941	3300028885	Soil	VAGDINPFVYSRPVAPEDVLGREPEIRQLLSLAGGGHNVRRY
Ga0247827_104694971	3300028889	Soil	VIVQTNPFVYSRPLSPEDVIDRDAEVGELLRLAVAERPP
Ga0247827_111178692	3300028889	Soil	MIVDVNPFVYSRPVAPEDVVDREDEVRQLLRNVVGGHY
Ga0302326_104425331	3300031525	Palsa	VLDANPFIYSHPLGPEDIINRDGETQALLQNAVGGHYVRLFA
Ga0302326_105354404	3300031525	Palsa	MITDVNPFVYSHPLAPEDIIDRDQETHDLLANAVGGHYV
Ga0307408_1012531251	3300031548	Rhizosphere	MIRDVNPFVYSRPVAPEDVVDREAEVRSLLHHAVGGHYVRLYDP
Ga0318573_107954291	3300031564	Soil	LSTDLIEDVNPFVYSRPISPADLVDRHGETHELLTKAVGGHYV
Ga0306922_106612352	3300032001	Soil	VITDANPFVYSRPIPPEDLIDRDPEAADLLRAAVGGHY
Ga0310906_108030481	3300032013	Soil	MITDVNPFVYSHPVSAEEVIDRDGETQELLRNAVGGHFVR
Ga0315268_114888991	3300032173	Sediment	MPITDVNPVVYSHPLVPDDIIDRDEETEQLLRNVVGGHYVRLYAPRKYGK
Ga0307470_118115111	3300032174	Hardwood Forest Soil	VIDDINPFIYSHPVEPEDVIDRDDETRKLLADAVGGHFVR
Ga0335081_120377502	3300032892	Soil	MIDVNPFVYSHPVAPEDVIDRDEETDTLLRNAVGG
Ga0335076_107823451	3300032955	Soil	MIEDVNPFVYSRPISPEEILDRDAETHDLLKSAVG