Metagenome Family F077754

Basic Information
Family ID	F077754
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	49 residues
Representative Sequence	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMSERERRMGLEPGPEDPE
Number of Associated Samples	54
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.09 %
% of genes near scaffold ends (potentially truncated)	18.80 %
% of genes from short scaffolds (< 2000 bps)	78.63 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (71.795 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (28.205 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (30.769 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1F24TB_104505462 2JGI10216J12902_1002253011 3JGI10216J12902_1063250193 4JGIcombinedJ43975_100662852 5JGI25407J50210_100001163 6JGI25407J50210_100123471 7JGI25407J50210_100217691 8JGI25407J50210_100241803 9JGI25407J50210_100555432 10JGI25407J50210_100603112 11Ga0058689_101767172 12Ga0063356_1007637751 13Ga0058697_100130643 14Ga0058697_100336162 15Ga0058697_100536284 16Ga0058697_101738762 17Ga0058697_102154541 18Ga0058697_102216232 19Ga0081538_100050689 20Ga0081538_1000591111 21Ga0081538_100902173 22Ga0081538_101550142 23Ga0081538_102771912 24Ga0081539_100634243 25Ga0082029_13948032 26Ga0079215_116802732 27Ga0079216_107824763 28Ga0126307_100466313 29Ga0126307_100755442 30Ga0126307_102598062 31Ga0126307_103055423 32Ga0126307_114244532 33Ga0126313_100042747 34Ga0126313_100328822 35Ga0126313_103081232 36Ga0126313_107963702 37Ga0126305_101140681 38Ga0126305_110517302 39Ga0126304_100951012 40Ga0126315_100222892 41Ga0126315_101424962 42Ga0126315_103435551 43Ga0126308_101191993 44Ga0126312_101983153 45Ga0126312_106373901 46Ga0126314_104877122 47Ga0126314_105350722 48Ga0126314_106705641 49Ga0126310_102476711 50Ga0126311_114888061 51Ga0126306_101810721 52Ga0126306_107518762 53Ga0138505_1000227541 54Ga0182000_100470182 55Ga0182000_101059782 56Ga0182000_102135122 57Ga0190266_100644824 58Ga0190275_102921091 59Ga0190268_102095531 60Ga0190274_134446632 61Ga0190264_105609632 62Ga0190267_114297921 63Ga0182009_107429671 64Ga0208216_1004022 65Ga0209795_100680122 66Ga0209795_101271112 67Ga0209795_101653222 68Ga0209795_102162291 69Ga0209795_102445411 70Ga0209461_100132583 71Ga0307278_101059432 72Ga0268240_100493612 73Ga0268259_100039761 74Ga0268259_100301312 75Ga0268243_10050704 76Ga0268243_10226661 77Ga0268243_10302902 78Ga0268253_100933901 79Ga0268255_100760743 80Ga0268255_100909262 81Ga0268255_102516392 82Ga0307408_1000034062 83Ga0307408_1000482202 84Ga0307408_1002669421 85Ga0307408_1002810962 86Ga0307408_1004469073 87Ga0307408_1015637791 88Ga0307408_1019202541 89Ga0307405_100180685 90Ga0307405_100226771 91Ga0307405_100404093 92Ga0307405_100853193 93Ga0307413_102515992 94Ga0307413_104579833 95Ga0307413_108629511 96Ga0307413_113495812 97Ga0307410_101154281 98Ga0307410_105194402 99Ga0307410_115852482 100Ga0307406_102349263 101Ga0307406_108778692 102Ga0307406_109030431 103Ga0307406_114180521 104Ga0307406_115599061 105Ga0307409_1000220536 106Ga0307409_1016610522 107Ga0307409_1024607802 108Ga0307416_1011654972 109Ga0307416_1014216881 110Ga0307416_1035375762 111Ga0307414_120117461 112Ga0307411_110270202 113Ga0307411_122929562 114Ga0307415_1001117651 115Ga0268251_105593351 116Ga0334913_003676_3225_3374 117Ga0334932_026693_186_335
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1F24TB_104505462 2JGI25407J50210_100603112 3Ga0081538_101550142 4Ga0126305_101140681 5Ga0126305_110517302 6Ga0126314_106705641 7Ga0126311_114888061 8Ga0190274_134446632 9Ga0190264_105609632 10Ga0209795_102162291 11Ga0307405_100226771 12Ga0307409_1016610522 13Ga0268251_105593351
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1JGIcombinedJ43975_100662852 2F24TB_104505462 3JGI10216J12902_1063250193 4JGI25407J50210_100217691 5JGI25407J50210_100603112 6Ga0058689_101767172 7Ga0058697_102154541 8Ga0081538_100902173 9Ga0081538_101550142 10Ga0126307_103055423 11Ga0182000_101059782 12Ga0190275_102921091 13Ga0190274_134446632 14Ga0190264_105609632 15Ga0208216_1004022 16Ga0209795_102162291 17Ga0307408_1002669421 18Ga0307408_1019202541 19Ga0307413_108629511 20Ga0307406_114180521 21Ga0334913_003676_3225_3374
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.77% β-sheet: 0.00% Coil/Unstructured: 66.23%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01966	HD	9.40
PF00248	Aldo_ket_red	7.69
PF00571	CBS	5.98
PF02517	Rce1-like	5.13
PF00872	Transposase_mut	2.56
PF01654	Cyt_bd_oxida_I	1.71
PF00857	Isochorismatase	1.71
PF00144	Beta-lactamase	0.85
PF03061	4HBT	0.85
PF01408	GFO_IDH_MocA	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	5.13
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	5.13
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	2.56
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.71
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.71
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	1.71
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.85
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.85
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.79 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.86 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	5.13 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Unclassified	root	N/A	28.21 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.26 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5.13 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.85 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Bailinhaonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.13 %
Unclassified	root	N/A	28.21 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.26 %
Bailinhaonella thermotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Bailinhaonella → Bailinhaonella thermotolerans	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5.13 %
Unclassified	root	N/A	28.21 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10450546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300000956\|JGI10216J12902_100225301	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300000956\|JGI10216J12902_106325019	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300002899\|JGIcombinedJ43975_10066285	Not Available	626	Open in IMG/M
3300003373\|JGI25407J50210_10000116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11448	Open in IMG/M
3300003373\|JGI25407J50210_10012347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2190	Open in IMG/M
3300003373\|JGI25407J50210_10021769	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300003373\|JGI25407J50210_10024180	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300003373\|JGI25407J50210_10055543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	999	Open in IMG/M
3300003373\|JGI25407J50210_10060311	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M

Showing 1 to 10 of 114 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	43.59%
Host-Associated	Host-Associated	56.41%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.41%
Terrestrial	Environmental → Terrestrial	43.59%

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%
Phylloplane	Host-Associated → Plants → Phylloplane	13.68%
Phyllosphere	Host-Associated → Plants → Phyllosphere	3.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.21%
Roots	Host-Associated → Plants → Roots	9.40%
Soil	Environmental → Terrestrial → Soil	42.73%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.71%
Loam	Environmental → Terrestrial → Soil → Loam	1.71%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	3.42%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	9.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.21%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	13.68%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.71%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.21%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	13.68%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	9.40%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	3.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	13.68%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.71%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	28.21%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	21.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.71%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	9.40%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.85%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M

Showing 1 to 10 of 54 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_104505462	3300000550	Soil	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGSEDPE*
JGI10216J12902_1002253011	3300000956	Soil	MADEPAPIPLDALDLESLSDEQLQRLTQLLMSERERRMGLEPGPEDPL*
JGI10216J12902_1063250193	3300000956	Soil	MAEEFTAPTPPDAIDIQSLNDEELQHLIQLLMRERERRMGLEPGPEDPE*
JGIcombinedJ43975_100662852	3300002899	Soil	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMSERERRMGLEPGPEDPE*
JGI25407J50210_100001163	3300003373	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPLDAIDTQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100123471	3300003373	Tabebuia Heterophylla Rhizosphere	MAEESTAPTPLDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100217691	3300003373	Tabebuia Heterophylla Rhizosphere	MADEPTARAPLDAIDLESLSDEELQRLIHLLMSERERRMGLEPGPEDPV*
JGI25407J50210_100241803	3300003373	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100555432	3300003373	Tabebuia Heterophylla Rhizosphere	MAEESTAPTPPDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
JGI25407J50210_100603112	3300003373	Tabebuia Heterophylla Rhizosphere	MTEQPAAGSPLDAIDLTSFSDEELQRLTQRIISERERRMGLEPGPEDPAE*
Ga0058689_101767172	3300004016	Agave	MAEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV*
Ga0063356_1007637751	3300004463	Arabidopsis Thaliana Rhizosphere	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE*
Ga0058697_100130643	3300005562	Agave	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEAPA*
Ga0058697_100336162	3300005562	Agave	MAEEPTVPTPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0058697_100536284	3300005562	Agave	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE*
Ga0058697_101738762	3300005562	Agave	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPE*
Ga0058697_102154541	3300005562	Agave	MAEESPVPTPLDAIDLQSLSDEELQRLTQLLMSERERRMGLEPGAEDPV*
Ga0058697_102216232	3300005562	Agave	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPG*
Ga0081538_100050689	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARTSLDALDLEALSDEELQRLIQLLMTERERRMGLEPGPEDPV*
Ga0081538_1000591111	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARTPLDAIDLQTFTDEELQRLSQLIISERERRMGLEPGPEDPE*
Ga0081538_100902173	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTARASFDAIDLESLSDEELRRLIQLLMSEQERRMGLEPGPDDPP*
Ga0081538_101550142	3300005981	Tabebuia Heterophylla Rhizosphere	MADKPAAPILLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL*
Ga0081538_102771912	3300005981	Tabebuia Heterophylla Rhizosphere	MAEEPTAPTPPDAIDTQSLSDEELQRLIQLLMRERERRMGLEPGPEEPE*
Ga0081539_100634243	3300005985	Tabebuia Heterophylla Rhizosphere	MAEEPTTPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE*
Ga0082029_13948032	3300006169	Termite Nest	MADEPAAPIPLDFESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0079215_116802732	3300006894	Agricultural Soil	MAEEPTAPSPLDAIDLESLSDDDLQRLTQLLMRERERRMGLEPGPEDPL*
Ga0079216_107824763	3300006918	Agricultural Soil	MAEEPTVPSPLDAIDLESLSDDELRRLTQLLMRERERRMGLEPGPEDPL*
Ga0126307_100466313	3300009789	Serpentine Soil	MAEEPTARTSLDAIDLASLSDEELQRLIRLLMSERERRMGLEPGPEDPV*
Ga0126307_100755442	3300009789	Serpentine Soil	MAEEPTVPTPLDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL*
Ga0126307_102598062	3300009789	Serpentine Soil	MADEPAAPTPLDALNLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126307_103055423	3300009789	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126307_114244532	3300009789	Serpentine Soil	MAEEPTVPSPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0126313_100042747	3300009840	Serpentine Soil	MAEEPTARTSLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV*
Ga0126313_100328822	3300009840	Serpentine Soil	MADEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL*
Ga0126313_103081232	3300009840	Serpentine Soil	MADEPAPIPLDALDLESLSDEELQRLTQLLMGERERRMGLEPGPEDPL*
Ga0126313_107963702	3300009840	Serpentine Soil	MAEEPTVPSPLDAINLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL*
Ga0126305_101140681	3300010036	Serpentine Soil	SWWPTHSEPQEGPMADEPAPIPLDALDLESLSDEELQHLTQLLMGERERRMGLEPGPEDPL*
Ga0126305_110517302	3300010036	Serpentine Soil	LDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126304_100951012	3300010037	Serpentine Soil	MAEEPTVPSALDAIDLESLSEDELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126315_100222892	3300010038	Serpentine Soil	MAEEPTAPTPLDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE*
Ga0126315_101424962	3300010038	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLVQLLMSERERRLGLEPGPEDPL*
Ga0126315_103435551	3300010038	Serpentine Soil	THSEPQEGPMADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0126308_101191993	3300010040	Serpentine Soil	MADEPAPIPLDALDLESLSDEELQRLTQMLMSERERRMGLEPGPEDPL*
Ga0126312_101983153	3300010041	Serpentine Soil	MAEEPTVLIPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE*
Ga0126312_106373901	3300010041	Serpentine Soil	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEDPA*
Ga0126314_104877122	3300010042	Serpentine Soil	MADEPAAPTPLDALDLESLSDEELQRLTQLLISERERRMGLEPGPEDPL*
Ga0126314_105350722	3300010042	Serpentine Soil	MAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPED
Ga0126314_106705641	3300010042	Serpentine Soil	MVEEPTVPSALDAIDLESLSEDELQRLIQLLMSERERRMGLEP
Ga0126310_102476711	3300010044	Serpentine Soil	MAEEPAATTPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE*
Ga0126311_114888061	3300010045	Serpentine Soil	PLDKIDFESLSDDDLRGLTRLLMREGERRMGLEPGPEGPR*
Ga0126306_101810721	3300010166	Serpentine Soil	THPEPQEGPMAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV*
Ga0126306_107518762	3300010166	Serpentine Soil	DALNLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0138505_1000227541	3300010999	Soil	MAEEPTAATPLDAVDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDSE*
Ga0182000_100470182	3300014487	Soil	MAEESTAPTPPDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE*
Ga0182000_101059782	3300014487	Soil	MAEEPTVPTPLDAIDLESLSDDELQRLTQLLMSERERRMGLEPGPEDPL*
Ga0182000_102135122	3300014487	Soil	MADEPAAPIPLDFESLSDEELQRLIQLLMSERERRMGLEPGPEDPL*
Ga0190266_100644824	3300017965	Soil	MAEEPTAATPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0190275_102921091	3300018432	Soil	MAEEPTAPIPLDAIDLQSLSDEELQRLTQRLMSERERRMGLEPGAEDPV
Ga0190268_102095531	3300018466	Soil	MAEEPTAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0190274_134446632	3300018476	Soil	MAEEPSARTPLDAIDFSSLTDEELQRLYELTIGEKERRMALEPGSEDPA
Ga0190264_105609632	3300019377	Soil	MTEEPTTGASPDEIDLTSFSDDDLQRLSQLIISERERRMGLEPGPDDPSS
Ga0190267_114297921	3300019767	Soil	MAEEPTVPTPLDAIDLESLSDDELQRLTQLLMSERERRMGLEPGPEDPL
Ga0182009_107429671	3300021445	Soil	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0208216_1004022	3300026670	Soil	MAEEPTARTSLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0209795_100680122	3300027718	Agave	MAEEPTARTSLDALDLQSLSDEELQRLTQLLMSERERRMGLEPGPEDPV
Ga0209795_101271112	3300027718	Agave	MAEEPAAAAPLDAIDLQSLSDEELKRLTQLLMSERERRMGLEPGPEDPE
Ga0209795_101653222	3300027718	Agave	MAEEPIAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0209795_102162291	3300027718	Agave	MAEESTARTPLDAIDLQSFTDEELQRLSQLIISEREQRMGLEPGPDDDV
Ga0209795_102445411	3300027718	Agave	MAEEPTAATPLDAIDLQSLSDEELRRLTQLLMSERERRMGLEPGPEEP
Ga0209461_100132583	3300027750	Agave	MAEEPTVPTPLDAIDLESLSDDELRRLTQLLMSERERRMGLEPGPEDPL
Ga0307278_101059432	3300028878	Soil	MAEEPTAQTPLDAIDLESLSDEELRRLTQLLMSERERRMGLEPGPEDPV
Ga0268240_100493612	3300030496	Soil	MAEESTAPTPPDAIDVQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268259_100039761	3300030499	Agave	EPQEGPMVDEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL
Ga0268259_100301312	3300030499	Agave	MAEEPTVPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268243_10050704	3300030510	Soil	MAEEPAAAPLDAMDLQSLSDEELKRLTRLLMGERERRMGLEPGPEDPE
Ga0268243_10226661	3300030510	Soil	MAEEPTVPTPLDAIDLQSLSDEDLQRLIQLLMGERERRMGLEPGPEDPE
Ga0268243_10302902	3300030510	Soil	MAEEPTAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268253_100933901	3300030514	Agave	MAEEPTAPTPLDAIDLQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268255_100760743	3300030516	Agave	MAEEPAAAPLDAIDLQSLSDEELKRLTRLLMGERERRMGLEPGPEDPE
Ga0268255_100909262	3300030516	Agave	PQEGLMAEEPTAPTPPDAIDIQSLSDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0268255_102516392	3300030516	Agave	MAEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV
Ga0307408_1000034062	3300031548	Rhizosphere	MADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPKDPL
Ga0307408_1000482202	3300031548	Rhizosphere	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307408_1002669421	3300031548	Rhizosphere	MAEEPTVPSALDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPV
Ga0307408_1002810962	3300031548	Rhizosphere	MAEEPTAPTPLDAIDVQSLSDEDLQRLIQLLMRERERRMGLEPGPEDPE
Ga0307408_1004469073	3300031548	Rhizosphere	MAEEPTVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307408_1015637791	3300031548	Rhizosphere	MAEEPTAPTPLDAIDLQSLNDEELQRLIQLLMRERERRMGLEPGPEDPE
Ga0307408_1019202541	3300031548	Rhizosphere	VAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0307405_100180685	3300031731	Rhizosphere	MAEEPTVPTPLDAIDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL
Ga0307405_100226771	3300031731	Rhizosphere	VAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMG
Ga0307405_100404093	3300031731	Rhizosphere	MADEPAAPIPLDALDLESLSDEELQRLIQLLMSERERRLGLEPGPEDPL
Ga0307405_100853193	3300031731	Rhizosphere	MVEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307413_102515992	3300031824	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLIQLLMSERERRMGLEPGPEDPL
Ga0307413_104579833	3300031824	Rhizosphere	PIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307413_108629511	3300031824	Rhizosphere	MAEESTAPTPPDAIDVQSLSDEEQQRLIQLLMRERERRMGLEPGPEDPE
Ga0307413_113495812	3300031824	Rhizosphere	TVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307410_101154281	3300031852	Rhizosphere	MAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGL
Ga0307410_105194402	3300031852	Rhizosphere	EEPTVPTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307410_115852482	3300031852	Rhizosphere	VAEEPTVPAPLDKIDFESLTDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0307406_102349263	3300031901	Rhizosphere	EPTVPTRFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307406_108778692	3300031901	Rhizosphere	MTEEPTARSPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEEPV
Ga0307406_109030431	3300031901	Rhizosphere	MAEEPTAPTPLDAIDLQSLNDEELRRLIQLLMRERERRMGLEPGPEDPE
Ga0307406_114180521	3300031901	Rhizosphere	MAEEPTVPIPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307406_115599061	3300031901	Rhizosphere	IPMAEEPAAAPLDAIDLQSLSDEELKRLTQLLMGERERRMGLEPGPEDPE
Ga0307409_1000220536	3300031995	Rhizosphere	EGPMADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPKDPL
Ga0307409_1016610522	3300031995	Rhizosphere	LVPTHPEPQESPVAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGP
Ga0307409_1024607802	3300031995	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307416_1011654972	3300032002	Rhizosphere	MAEEPTAKTPLDAIDLESLSDEELQRLTQLLMRERERRMGLEPGPEDPV
Ga0307416_1014216881	3300032002	Rhizosphere	MAEEPTVPTPLDKIDFESLSDDDLRGLTRLLMREGERRMGLEPGPEGPR
Ga0307416_1035375762	3300032002	Rhizosphere	MADEPAAPTPLDALDLESLSDEELQRLVQLLMSERERRLGLEPGPEDPL
Ga0307414_120117461	3300032004	Rhizosphere	PTPFDAIDLQSLSDEELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307411_110270202	3300032005	Rhizosphere	MADEPAPIPLDALDLESLSDEELQRLTQLLMSERERRMGLEPGPEDPL
Ga0307411_122929562	3300032005	Rhizosphere	MAEEPTVPIPFDAIDLQSLSDDELQRLIQLLMSERERRLGLEPGAEDPE
Ga0307415_1001117651	3300032126	Rhizosphere	PQESPVAEEPTVPAPLDKIDFESLSDDELRGLTRLLMREGERRMGLEPGPEGPL
Ga0268251_105593351	3300032159	Agave	SLPIPEPQEGLMAEEPTVPTPLDAIDLQSLSDADLQRLIQLLMGERERRMGLEPGPEDPE
Ga0334913_003676_3225_3374	3300034172	Sub-Biocrust Soil	MAEEPTVPGVLDAIDLESLSDEELQRLIQLLMRERERRMGLEPGSEDPA
Ga0334932_026693_186_335	3300034174	Sub-Biocrust Soil	MAEEPTDRTPLDAIDLQSFTDEELQRLSQLIISERERRMGLEPGPEDPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077754

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences