NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077651

Metagenome / Metatranscriptome Family F077651

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077651
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 36 residues
Representative Sequence MKWLMWALVAVAIALGLALLAGKSDLRRFQRMRRM
Number of Associated Samples 74
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 88.03 %
% of genes near scaffold ends (potentially truncated) 13.68 %
% of genes from short scaffolds (< 2000 bps) 88.03 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.812 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(29.915 % of family members)
Environment Ontology (ENVO) Unclassified
(47.009 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.120 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1JGI10216J12902_1156678192
2Ga0070709_115629542
3Ga0070734_104349662
4Ga0066905_1000273482
5Ga0066903_1000459442
6Ga0066903_1002753273
7Ga0066903_1007037232
8Ga0066903_1008591743
9Ga0066903_1011281872
10Ga0066903_1021049701
11Ga0066903_1029148092
12Ga0066903_1061737212
13Ga0066903_1077270651
14Ga0070717_100889353
15Ga0070716_1012508421
16Ga0070712_1010027672
17Ga0079222_100882633
18Ga0079221_108509591
19Ga0075425_1001875712
20Ga0075425_1006909423
21Ga0099827_104118603
22Ga0126380_103047852
23Ga0126373_103448763
24Ga0126373_107874832
25Ga0126373_110221792
26Ga0126373_120804671
27Ga0126318_101480561
28Ga0127503_112037921
29Ga0126370_100146121
30Ga0126370_108433653
31Ga0126370_116101011
32Ga0126372_105919681
33Ga0126372_115858402
34Ga0126372_121553252
35Ga0126378_105545981
36Ga0126378_110167582
37Ga0126378_110422341
38Ga0126378_113770171
39Ga0126379_112331373
40Ga0126379_134112601
41Ga0126381_1000943882
42Ga0126381_1016326282
43Ga0126381_1022431601
44Ga0126381_1036911352
45Ga0136449_1014425523
46Ga0126383_110883962
47Ga0126383_126096042
48Ga0137776_13824593
49Ga0137389_110731401
50Ga0137383_107982091
51Ga0137381_108674331
52Ga0137378_106345661
53Ga0137378_117403162
54Ga0137377_106440391
55Ga0137390_119352841
56Ga0137398_103192832
57Ga0137413_114536042
58Ga0126369_102281582
59Ga0126369_116874021
60Ga0182039_108577542
61Ga0182038_111085261
62Ga0182038_121628861
63Ga0179592_101316771
64Ga0210383_116755481
65Ga0210392_110946551
66Ga0210402_109906912
67Ga0126371_102530773
68Ga0126371_102911202
69Ga0126371_103943022
70Ga0126371_113318183
71Ga0126371_114581862
72Ga0126371_116304602
73Ga0126371_122809871
74Ga0126371_124406951
75Ga0126371_125165231
76Ga0126371_130689871
77Ga0242667_10201561
78Ga0207692_109479072
79Ga0207684_111121202
80Ga0207646_100607583
81Ga0257156_10508131
82Ga0209178_10478842
83Ga0209060_104190471
84Ga0209380_107214172
85Ga0209006_107898402
86Ga0170824_1223654991
87Ga0318516_1000153411
88Ga0318516_100087593
89Ga0318516_102056273
90Ga0318516_102550682
91Ga0318534_100752912
92Ga0318534_106447922
93Ga0318541_102987291
94Ga0318538_102712951
95Ga0318571_103395521
96Ga0310915_101636662
97Ga0318542_101968062
98Ga0318572_100786841
99Ga0318496_100097052
100Ga0318496_105291641
101Ga0318501_102947672
102Ga0318546_104594602
103Ga0318552_105290172
104Ga0318503_101099351
105Ga0318557_103691791
106Ga0306923_124715812
107Ga0310909_107511962
108Ga0307479_115050031
109Ga0318563_103191562
110Ga0318532_101572482
111Ga0311301_120589702
112Ga0307471_1000404192
113Ga0307472_1008609732
114Ga0307472_1019541591
115Ga0306920_1029873332
116Ga0306920_1035563451
117Ga0335078_100219663
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 52.38%    β-sheet: 0.00%    Coil/Unstructured: 47.62%
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5101520253035MKWLMWALVAVAIALGLALLAGKSDLRRFQRMRRMSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
65.8%34.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Sediment
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
9.4%29.9%23.1%5.1%3.4%8.5%6.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11566781923300000956SoilMKWLMWALVAVAIALGLALLAGKSDLRRFQRMRRM*
Ga0070709_1156295423300005434Corn, Switchgrass And Miscanthus RhizosphereMKLLRWALVAVVVALGLALLAGKSDLRRFLRMRRMEEVGA
Ga0070734_1043496623300005533Surface SoilMKLLRWALVALIVALGLALLAGKSDIRRYQRMRRM*
Ga0066905_10002734823300005713Tropical Forest SoilMKWLMWVLAAVAIAIGLALLAGKSDLRRFQRMRRM*
Ga0066903_10004594423300005764Tropical Forest SoilMKWLMWALLAVAIAIGLALLAGKSDLRRFQRMRRM*
Ga0066903_10027532733300005764Tropical Forest SoilMKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRM*
Ga0066903_10070372323300005764Tropical Forest SoilMKLLRWALVAVIVALGLALLVGQSDLRRFQRMRSM*
Ga0066903_10085917433300005764Tropical Forest SoilMKWLMWALLAVVIAIALVLLAGKSDLRRFQRMRRM*
Ga0066903_10112818723300005764Tropical Forest SoilMKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM*
Ga0066903_10210497013300005764Tropical Forest SoilMKWLMWALLAVAIAIGLFLLAGKSDLRRFQRMRRM*
Ga0066903_10291480923300005764Tropical Forest SoilMKWLMWALVAVAIAIGLALLVGQGDLRRFQRMRRM*
Ga0066903_10617372123300005764Tropical Forest SoilMKLLTWVLVAVVIALGLALLAGQSDLRRFQRMRRM*
Ga0066903_10772706513300005764Tropical Forest SoilMKWLMWALVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0070717_1008893533300006028Corn, Switchgrass And Miscanthus RhizosphereMKLLRWTLVAVAVVLGLALLAGQGDIRRYRRMRRM*
Ga0070716_10125084213300006173Corn, Switchgrass And Miscanthus RhizosphereMKLLRWALVVVTVALGLALLAGRSDLRRYQRMRRM*
Ga0070712_10100276723300006175Corn, Switchgrass And Miscanthus RhizosphereDRQGALMKWLMWALLAVAIAIGLILLAGQGDLRRFQRMRRM*
Ga0079222_1008826333300006755Agricultural SoilMKWLMWALLAVAIAIALVLLAGKSDLRRFQRMRRM*
Ga0079221_1085095913300006804Agricultural SoilMKWLMWALLAVAIAIGLILLAGQGDLRRFQRMRRM*
Ga0075425_10018757123300006854Populus RhizosphereMKWLMWALLAVAIAIGLALLAGQNDLRRFQRMRRM*
Ga0075425_10069094233300006854Populus RhizosphereMKLLRWALVAVLVALGLALLAGQSDLRRFQRMRRM*
Ga0099827_1041186033300009090Vadose Zone SoilMKWLGWALAALAIAIGVALLAGKSDLRRYRRMRRM*
Ga0126380_1030478523300010043Tropical Forest SoilMKWLMWALLAVAIAIGLILLAGKGDLRRYQRMRRM*
Ga0126373_1034487633300010048Tropical Forest SoilMKWLMWALVAVIIAIGLVLLAGKSDLSRFQRMRRM*
Ga0126373_1078748323300010048Tropical Forest SoilMKWLMWALLAVAIAIGLALLAGQSDLRRFQRMRRM*
Ga0126373_1102217923300010048Tropical Forest SoilMKWLMWALLAVAIAIGLVLLAGKSDLRRFQRMRRM*
Ga0126373_1208046713300010048Tropical Forest SoilMKPLRWALVAVVIALGLALLAGQKDLRRFQRMRRL*
Ga0126318_1014805613300010152SoilMKLLRWALVAVVIALALALLAGQSDIRRFQRMRRM*
Ga0127503_1120379213300010154SoilSGANRQGARMKWLMWALLAVAIAIGLALLAGKSDIRRYQRMRRM*
Ga0126370_1001461213300010358Tropical Forest SoilMKWLMWALAVVAIAIGLTLLAGKGDLRRFQRMRRM*
Ga0126370_1084336533300010358Tropical Forest SoilMKLLRWALVAVIVALGLALLAGQSDLRRFQRMRRM*
Ga0126370_1161010113300010358Tropical Forest SoilMKLLRWTLVAVIVALGLAFLAGQSDLRRFQRMRRKSRRAET
Ga0126372_1059196813300010360Tropical Forest SoilMKWLLWVLVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0126372_1158584023300010360Tropical Forest SoilMKPLRWALVAVVIALGLALLAGQKDLRRFQRMRRM*
Ga0126372_1215532523300010360Tropical Forest SoilMKWLMWALAAVVIAIGLALLAGKNDLRRFQRMRRM*
Ga0126378_1055459813300010361Tropical Forest SoilMKWLGWVLVVLVIAIGSALLAGNGDLRRFQRMRRM*
Ga0126378_1101675823300010361Tropical Forest SoilMKWLMWALVAVAIALALALLAGKGDLRRFQRMRRM*
Ga0126378_1104223413300010361Tropical Forest SoilMKLLRWALIATIVVLGLALLAGQGDLRRFQRMRRM*
Ga0126378_1137701713300010361Tropical Forest SoilMKLLIWVLVALIVALGLALLAGQSDLRRFQRMRRM*
Ga0126379_1123313733300010366Tropical Forest SoilMKWLMWALVAVIIAIGLVLLAGKGDLSRFQRMRRM*
Ga0126379_1341126013300010366Tropical Forest SoilMEHGMKWLMWALVAVAIAIGLALLAGQGDLRRFQRMRRM*
Ga0126381_10009438823300010376Tropical Forest SoilMKWLMWALLAVAIAIGLVLLAGKSDLRRYQRMRRM*
Ga0126381_10163262823300010376Tropical Forest SoilMKGLMWALLAVAIAIGLILLAGKVDLRRYQRMRRM*
Ga0126381_10224316013300010376Tropical Forest SoilMKLLRWTLIAVIVALGLALLAGKSDIRRYQRMRRM*
Ga0126381_10369113523300010376Tropical Forest SoilMKWLMWALLAVAIALGLVLLAGKSDLRRYQRMRRM*
Ga0136449_10144255233300010379Peatlands SoilMKLLRWALVAVVVALGLALLAGQSDLRRFQRMHRM*
Ga0126383_1108839623300010398Tropical Forest SoilMKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRI*
Ga0126383_1260960423300010398Tropical Forest SoilMKWLMWALLAVVIAIGLILLAGKGDLRRFQRMRRM*
Ga0137776_138245933300010937SedimentMKLLTWALIVLIVALGLALLAGKSDIRRYQRMRKM*
Ga0137389_1107314013300012096Vadose Zone SoilMKLLRWALVAVIVGLGLALLAGQSDIRRYQRMRRM*
Ga0137383_1079820913300012199Vadose Zone SoilMKLVRWALVAVAIIVVVALLAGKSDLRRFLRMRRM*
Ga0137381_1086743313300012207Vadose Zone SoilMKLVRWALVAVAIIVLVALLAGKSDLRRFRRMRRM*
Ga0137378_1063456613300012210Vadose Zone SoilMKLLRWTLVAVIVALGLALLAGQSDIRRYQRMRRM*
Ga0137378_1174031623300012210Vadose Zone SoilMKLLRWTLVAVLVALGLALLAGKSDIRRYQRMRRM*
Ga0137377_1064403913300012211Vadose Zone SoilMKWLMWALLAVAIAIGLALLAGKSDLRRYQRMRRM*
Ga0137390_1193528413300012363Vadose Zone SoilMKLLRWTLVAVLVALGIALLAGKSDIRRYQRMRRM*
Ga0137398_1031928323300012683Vadose Zone SoilMKLLRWALVAVIVGLGLALLAGKSDIRRYQRMRKM*
Ga0137413_1145360423300012924Vadose Zone SoilMKLLRWALVAVIVALGLALLAGKSDIRRYQRMRKM*
Ga0126369_1022815823300012971Tropical Forest SoilMKWLMWALLAVVIAIGLALLAGKSDLRRFQRMRRM*
Ga0126369_1168740213300012971Tropical Forest SoilMKWLMWALVALAIAIGLALLAGQGDLRRFQRMRRM*
Ga0182039_1085775423300016422SoilMKWLIWALLAVAIAIGLALLAGKSDFRHFQRMRRM
Ga0182038_1110852613300016445SoilMKLLRWALVAVIEGLGLALLAGKSDIRRYQRMRRM
Ga0182038_1216288613300016445SoilMKWLMWALLAVAIAIGLALLAGKSDFRRFQRMRRM
Ga0179592_1013167713300020199Vadose Zone SoilMKLLRWALVAVIVALGLALLAGKSDIRRYQRMRRM
Ga0210383_1167554813300021407SoilMKVLRWALVAVVIALGLALIAGKDDLRRYQRMRRM
Ga0210392_1109465513300021475SoilMKLLRWVLVAVIVVLGLALLAGKSDLRRYQRMRRM
Ga0210402_1099069123300021478SoilAPMKWLMWALLAVTIAIGLALLAGKSDFRRFQRMRRM
Ga0126371_1025307733300021560Tropical Forest SoilMKWLMWALLAVVIAIALVLLAGKSDLRRFQRMRRM
Ga0126371_1029112023300021560Tropical Forest SoilMKLLRWALVAVIVALGLALLVGQSDLRRFQRMRSM
Ga0126371_1039430223300021560Tropical Forest SoilMKWLMWALAVVAIAIGLALLAGKGDLRRFQRMRRM
Ga0126371_1133181833300021560Tropical Forest SoilMKWLMWILAAIVIAIGLVLLAGKGDLQRFQRMRRM
Ga0126371_1145818623300021560Tropical Forest SoilMKWLMWALLAVAIAIGLVLLAGKSDLRRFQRMRRM
Ga0126371_1163046023300021560Tropical Forest SoilMKWLIWALVAVAVAIALGLALLAGKSDLQRFQRMRRM
Ga0126371_1228098713300021560Tropical Forest SoilMKWLMWALLAVAIVIGLILLAGKGDLRRYQRMRRM
Ga0126371_1244069513300021560Tropical Forest SoilMKWLMWALLAVAIALGLVLLAGKSDLRRYQRMRRM
Ga0126371_1251652313300021560Tropical Forest SoilMKWLMWALLAVAIAIGLAVLAGQSDLRRFQRMRRM
Ga0126371_1306898713300021560Tropical Forest SoilMKWLMWALLAVAIAIGLVLLAGKGDLRRFQRMRRM
Ga0242667_102015613300022513SoilMKPLGWTLVAVVIALGLALLTSQDDIRRYQRMRRM
Ga0207692_1094790723300025898Corn, Switchgrass And Miscanthus RhizosphereMKLMRWVLVALVVALGLALLAGQSDIRRYQRMRRM
Ga0207684_1111212023300025910Corn, Switchgrass And Miscanthus RhizosphereMKLLRWALVAVAVVLGLALLAGQSDIRRYRRMRRM
Ga0207646_1006075833300025922Corn, Switchgrass And Miscanthus RhizosphereMKLLGWTLVAVAVVLGLALLAGQGDIRRYRRMRRM
Ga0257156_105081313300026498SoilMKWLMWALLAVAIAIGLALLAGKSDLRRYQRMRRM
Ga0209178_104788423300027725Agricultural SoilMKWLMWALLAVAIAIALVLLAGKSDLRRFQRMRRM
Ga0209060_1041904713300027826Surface SoilMKLLRWALVALIVALGLALLAGKSDIRRYQRMRRM
Ga0209380_1072141723300027889SoilPRGSRMKLLRWALVAVIVGLGLALLAGRSDIRRYQRMRRM
Ga0209006_1078984023300027908Forest SoilMKLLRWALVAVVVGLGLALLAGKNDIRRYQRMRRM
Ga0170824_12236549913300031231Forest SoilRQGARMKWLMWALLAVAIAIGLALLAGKSDIRRYQRMRRM
Ga0318516_10001534113300031543SoilMKLLRWALVAVIIALGLAFLAGQSDLRRFQRMRRM
Ga0318516_1000875933300031543SoilMKWLMWALVAVAIALGLALLAGKSDLQRFQRMRRM
Ga0318516_1020562733300031543SoilMKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM
Ga0318516_1025506823300031543SoilMKWLIWALLAVAIAIGLALLAGKSDFRRFQRMRRM
Ga0318534_1007529123300031544SoilMKWLMWALLAVVIAIGLALLAGKSDFRRFQRMRRM
Ga0318534_1064479223300031544SoilMKLLIWVLAAILIAVGLALLAGKGDLQRFQRMRRM
Ga0318541_1029872913300031545SoilMKWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0318538_1027129513300031546SoilMKWLIWALLAVAIAVGLALLAGKSDFRRFQRMRRM
Ga0318571_1033955213300031549SoilMKWLMWALLAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0310915_1016366623300031573SoilMKWLGWVLVVLVIAIGIALLAGNGDLRRFQRMRRM
Ga0318542_1019680623300031668SoilMKWLMWALVAVVIAIGLALLAGKGDLQRFQRMRRM
Ga0318572_1007868413300031681SoilRGSRMKLLRWALVAVIIALGLAFLAGQSDLRRFQRMRRM
Ga0318496_1000970523300031713SoilMKLLRWALIAVVIALALVLLAGQGGLRRFQRMRRM
Ga0318496_1052916413300031713SoilRQGAWMKWLMWALVAVAIAIGLALLAGQGDIRRYQRMRRM
Ga0318501_1029476723300031736SoilMKLLRWALVALVIALGLALLAGKSDIRRYQRMRRM
Ga0318546_1045946023300031771SoilMKWLMWALLAVAVAIGLILLAGQSDLRRFQRMRRM
Ga0318552_1052901723300031782SoilRRRGSSMKLLRWALVALVIALGLALLAGKSDIRRYQRMRRM
Ga0318503_1010993513300031794SoilGSRMKLLRWALIAVVIALALVLLAGQGDLRRFQRMRRM
Ga0318557_1036917913300031795SoilRGHGMKWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0306923_1247158123300031910SoilMKWLMWALLAVAIAIGLVLLAGKSDLQRFQRMRRM
Ga0310909_1075119623300031947SoilMKLLRWALVAVIIALGLALLAGQSDLRRFQRMRRM
Ga0307479_1150500313300031962Hardwood Forest SoilMKWLMWALVAVAIAIGLALLAGKADLQRFQRMRRM
Ga0318563_1031915623300032009SoilMKLLRWMLIAVVIALGLALLAGQSDLRRFQRMRRM
Ga0318532_1015724823300032051SoilATDRGHGMRWLMWALVAVAIAIGLALLAGQSDLRRFQRMRRM
Ga0311301_1205897023300032160Peatlands SoilMKLLRWALVAVVVALGLALLAGQSDLRRFQRMHRM
Ga0307471_10004041923300032180Hardwood Forest SoilMKWLMWVLVTIAIAIGLALFAGKNDIRRYQRMRRM
Ga0307472_10086097323300032205Hardwood Forest SoilMKWLMWALVAVAIAIGLGLLAGQGDLRRFQRMRRM
Ga0307472_10195415913300032205Hardwood Forest SoilMKLLRWALVVVIVALGLALLAGRSDLRRYQRMRRM
Ga0306920_10298733323300032261SoilMKWLMWALVTVAIAIGLALLAGQGDIRRYQRMRRM
Ga0306920_10355634513300032261SoilMKLLRWALVAVIVGLGLALLAGKSDIRRYQRMRRM
Ga0335078_1002196633300032805SoilMKWLIWALLAVALAVGVALLAGKGDIRRFQRMKRM


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