Metagenome / Metatranscriptome Family F077553

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077553
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	77 residues
Representative Sequence	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSQAQSL
Number of Associated Samples	81
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.56 %
% of genes near scaffold ends (potentially truncated)	23.93 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.137 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (18.803 % of family members)
Environment Ontology (ENVO)	Unclassified (29.915 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.248 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.74% β-sheet: 29.13% Coil/Unstructured: 62.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00248	Aldo_ket_red	15.38
PF07690	MFS_1	7.69
PF04397	LytTR	5.13
PF01894	UPF0047	4.27
PF06283	ThuA	4.27
PF04209	HgmA_C	2.56
PF09084	NMT1	2.56
PF06439	3keto-disac_hyd	2.56
PF02518	HATPase_c	1.71
PF13620	CarboxypepD_reg	1.71
PF00756	Esterase	0.85
PF17186	Lipocalin_9	0.85
PF04338	DUF481	0.85
PF03551	PadR	0.85
PF00282	Pyridoxal_deC	0.85
PF02347	GDC-P	0.85
PF00005	ABC_tran	0.85
PF06580	His_kinase	0.85
PF02687	FtsX	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	4.27
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	4.27
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.56
COG3508	Homogentisate 1,2-dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.56
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.56
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.85
COG0403	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain	Amino acid transport and metabolism [E]	0.85
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.85
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.85
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.85
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.85
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.85
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.85
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.14 %
Unclassified	root	N/A	47.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.14 %
Unclassified	root	N/A	47.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.14 %
Unclassified	root	N/A	47.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.53 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Colwelliaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	4.27 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.42 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	2.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.85 %
Colwellia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.42 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2.56 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	2.56 %
Edaphobacter modestus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Colwellia piezophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → Colwellia piezophila	0.85 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10402840	Not Available	825	Open in IMG/M
3300002245\|JGIcombinedJ26739_100243530	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300002245\|JGIcombinedJ26739_101019235	Not Available	713	Open in IMG/M
3300004080\|Ga0062385_10025243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2305	Open in IMG/M
3300004082\|Ga0062384_100221498	Not Available	1130	Open in IMG/M
3300004082\|Ga0062384_101139845	Not Available	564	Open in IMG/M
3300004091\|Ga0062387_100507947	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300004092\|Ga0062389_103295589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300004092\|Ga0062389_103956818	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300004092\|Ga0062389_104101409	Not Available	547	Open in IMG/M
3300004152\|Ga0062386_101353352	Not Available	592	Open in IMG/M
3300004635\|Ga0062388_100407620	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300004635\|Ga0062388_101199382	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005537\|Ga0070730_10017726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	5610	Open in IMG/M
3300005541\|Ga0070733_10484117	Not Available	827	Open in IMG/M
3300005591\|Ga0070761_10521199	Not Available	735	Open in IMG/M
3300005921\|Ga0070766_10802448	Not Available	641	Open in IMG/M
3300005952\|Ga0080026_10166901	Not Available	642	Open in IMG/M
3300006176\|Ga0070765_100085269	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300006176\|Ga0070765_100869567	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300009633\|Ga0116129_1029894	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1813	Open in IMG/M
3300009633\|Ga0116129_1117964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	762	Open in IMG/M
3300009665\|Ga0116135_1128223	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	935	Open in IMG/M
3300009665\|Ga0116135_1386964	Not Available	565	Open in IMG/M
3300010864\|Ga0126357_1297509	Not Available	520	Open in IMG/M
3300010865\|Ga0126346_1040873	Not Available	540	Open in IMG/M
3300010867\|Ga0126347_1374002	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300011120\|Ga0150983_14318802	Not Available	588	Open in IMG/M
3300011270\|Ga0137391_10006695	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8983	Open in IMG/M
3300012363\|Ga0137390_10244502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1780	Open in IMG/M
3300012917\|Ga0137395_10893694	Not Available	642	Open in IMG/M
3300012925\|Ga0137419_10910434	Not Available	725	Open in IMG/M
3300014201\|Ga0181537_10022538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4421	Open in IMG/M
3300014495\|Ga0182015_10076937	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300014495\|Ga0182015_10123436	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300014495\|Ga0182015_10253340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300014501\|Ga0182024_12215016	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300014838\|Ga0182030_10594026	Not Available	1070	Open in IMG/M
3300018034\|Ga0187863_10337699	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300020582\|Ga0210395_10485406	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300020582\|Ga0210395_10650477	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	790	Open in IMG/M
3300020583\|Ga0210401_10326068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1397	Open in IMG/M
3300021180\|Ga0210396_10763337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	832	Open in IMG/M
3300021181\|Ga0210388_11448687	Not Available	575	Open in IMG/M
3300021401\|Ga0210393_10595854	Not Available	903	Open in IMG/M
3300021401\|Ga0210393_10847489	Not Available	743	Open in IMG/M
3300021406\|Ga0210386_10022065	All Organisms → cellular organisms → Bacteria	4968	Open in IMG/M
3300021407\|Ga0210383_10353783	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266	Open in IMG/M
3300021407\|Ga0210383_10803521	Not Available	805	Open in IMG/M
3300021407\|Ga0210383_10993031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus	712	Open in IMG/M
3300021433\|Ga0210391_10657318	Not Available	822	Open in IMG/M
3300021474\|Ga0210390_10278752	Not Available	1416	Open in IMG/M
3300021477\|Ga0210398_10669891	Not Available	840	Open in IMG/M
3300022530\|Ga0242658_1238063	Not Available	510	Open in IMG/M
3300022840\|Ga0224549_1025022	Not Available	816	Open in IMG/M
3300025463\|Ga0208193_1059756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	810	Open in IMG/M
3300025463\|Ga0208193_1066406	Not Available	750	Open in IMG/M
3300025504\|Ga0208356_1099815	Not Available	550	Open in IMG/M
3300025612\|Ga0208691_1084236	Not Available	717	Open in IMG/M
3300026555\|Ga0179593_1051989	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3693	Open in IMG/M
3300027545\|Ga0209008_1089011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	691	Open in IMG/M
3300027559\|Ga0209222_1012580	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300027590\|Ga0209116_1133527	Not Available	542	Open in IMG/M
3300027648\|Ga0209420_1179328	Not Available	570	Open in IMG/M
3300027729\|Ga0209248_10029353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1714	Open in IMG/M
3300027795\|Ga0209139_10091567	Not Available	1069	Open in IMG/M
3300027795\|Ga0209139_10279292	Not Available	589	Open in IMG/M
3300027853\|Ga0209274_10109198	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300027853\|Ga0209274_10731370	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	510	Open in IMG/M
3300027857\|Ga0209166_10092824	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300027879\|Ga0209169_10081703	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300027895\|Ga0209624_10457973	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300027895\|Ga0209624_10557621	All Organisms → cellular organisms → Bacteria → Proteobacteria	761	Open in IMG/M
3300027908\|Ga0209006_10439611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → Colwellia piezophila	1094	Open in IMG/M
3300028780\|Ga0302225_10239235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	868	Open in IMG/M
3300028906\|Ga0308309_10034138	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300029882\|Ga0311368_10719132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300029943\|Ga0311340_10313959	All Organisms → cellular organisms → Bacteria → Acidobacteria	1485	Open in IMG/M
3300029944\|Ga0311352_10087364	All Organisms → cellular organisms → Bacteria → Acidobacteria	2765	Open in IMG/M
3300029944\|Ga0311352_10477528	Not Available	1011	Open in IMG/M
3300029999\|Ga0311339_11013098	Not Available	777	Open in IMG/M
3300029999\|Ga0311339_11235655	Not Available	682	Open in IMG/M
3300030007\|Ga0311338_10527979	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300030007\|Ga0311338_10754145	Not Available	976	Open in IMG/M
3300030053\|Ga0302177_10382316	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300030053\|Ga0302177_10415007	Not Available	703	Open in IMG/M
3300030058\|Ga0302179_10009782	All Organisms → cellular organisms → Bacteria → Acidobacteria	4989	Open in IMG/M
3300030503\|Ga0311370_10195560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2728	Open in IMG/M
3300030503\|Ga0311370_12460482	Not Available	502	Open in IMG/M
3300030618\|Ga0311354_11235962	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	674	Open in IMG/M
3300030618\|Ga0311354_11397285	Not Available	624	Open in IMG/M
3300031010\|Ga0265771_1012882	Not Available	644	Open in IMG/M
3300031057\|Ga0170834_114128981	Not Available	847	Open in IMG/M
3300031231\|Ga0170824_122151050	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031231\|Ga0170824_126103208	Not Available	637	Open in IMG/M
3300031234\|Ga0302325_10127824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4640	Open in IMG/M
3300031234\|Ga0302325_11875249	Not Available	747	Open in IMG/M
3300031236\|Ga0302324_100223304	All Organisms → cellular organisms → Bacteria → Acidobacteria	2974	Open in IMG/M
3300031236\|Ga0302324_100315310	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300031236\|Ga0302324_102737265	Not Available	595	Open in IMG/M
3300031261\|Ga0302140_10962789	Not Available	591	Open in IMG/M
3300031525\|Ga0302326_13651108	Not Available	508	Open in IMG/M
3300031708\|Ga0310686_104183387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9346	Open in IMG/M
3300031708\|Ga0310686_109356508	Not Available	1797	Open in IMG/M
3300031708\|Ga0310686_109874326	Not Available	1076	Open in IMG/M
3300031708\|Ga0310686_110412074	Not Available	619	Open in IMG/M
3300031708\|Ga0310686_113652672	All Organisms → cellular organisms → Bacteria → Acidobacteria	1802	Open in IMG/M
3300031708\|Ga0310686_114579969	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300031708\|Ga0310686_114825198	Not Available	736	Open in IMG/M
3300031715\|Ga0307476_11200980	Not Available	555	Open in IMG/M
3300031718\|Ga0307474_10370110	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300031823\|Ga0307478_10500512	Not Available	1013	Open in IMG/M
3300033828\|Ga0334850_025268	Not Available	1111	Open in IMG/M
3300034124\|Ga0370483_0090538	Not Available	1000	Open in IMG/M
3300034163\|Ga0370515_0022340	All Organisms → cellular organisms → Bacteria → Acidobacteria	2900	Open in IMG/M
3300034163\|Ga0370515_0075618	Not Available	1464	Open in IMG/M
3300034163\|Ga0370515_0187880	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.20%
Aquatic	Environmental → Aquatic	18.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.83%
Peat	Environmental → Terrestrial → Peat	21.37%
Freshwater	Environmental → Aquatic → Freshwater	18.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	21.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.80%
Loam	Environmental → Terrestrial → Soil → Loam	16.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	21.37%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	18.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.27%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.56%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.56%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.85%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031010	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300033828	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_104028401	3300001593	Forest Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVPLAQSL*
JGIcombinedJ26739_1002435302	3300002245	Forest Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEAMIGTLTKVSAAQSL*
JGIcombinedJ26739_1010192352	3300002245	Forest Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF*
Ga0062385_100252431	3300004080	Bog Forest Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSI*
Ga0062384_1002214983	3300004082	Bog Forest Soil	FGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWVLGENYYGRFRCQDGLVVQLTQAEEAMIGTLTKVSVAQPF*
Ga0062384_1011398451	3300004082	Bog Forest Soil	LKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRLNEVQPTLGLWP*
Ga0062387_1005079472	3300004091	Bog Forest Soil	VNGIRKLSDLKRGQIVRLAGSGAAVVEEIWVLGENYYGRFRCQDGLVVQLTQAEEAMIGTLTKVSVAQPF
Ga0062389_1032955891	3300004092	Bog Forest Soil	SDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSL*
Ga0062389_1039568182	3300004092	Bog Forest Soil	MFGRLLAAFEVPLKSAYVNGIRKLSDLKRGQVVRLAGSGAAVVEEIWSLGDGYYGRFRCQDGLDVMLTEAEEAMIGTLTKLSEGRSA*
Ga0062389_1041014091	3300004092	Bog Forest Soil	MASSCPLGLPVKSAYVNGIRRISELKRGQVVRLVGSGAAVVEEIWNLGEGYFGRFRCHDGLVVLLSEAEEAMIGTLTRLSEVQST*
Ga0062386_1013533521	3300004152	Bog Forest Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAVVEDIWMEANRYFGRFQCHDGLCVVLTEAEESMIGTLIRQK*
Ga0062388_1004076202	3300004635	Bog Forest Soil	LEFPLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSI*
Ga0062388_1011993821	3300004635	Bog Forest Soil	LKSAYVNGIRKLSELRRGQVVRLAGSGAAVVEEVWCVGECYFGRFRCQDGLLVLLTEAEEAMIGTLTRLREVQST*
Ga0070730_100177267	3300005537	Surface Soil	LKSAYVNGIRKISELKRGQVVRLVGSGAAVVEEIWTVRESYFGRFRCHDGLVVLLTEAEEAMIGTLTRQSEVQPSLGLWP*
Ga0070733_104841172	3300005541	Surface Soil	LKSAYVNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPAS*
Ga0070761_105211991	3300005591	Soil	KSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWVLGANYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF*
Ga0070766_108024481	3300005921	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSL*
Ga0080026_101669011	3300005952	Permafrost Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAALVQDIWLEADGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK*
Ga0070765_1000852692	3300006176	Soil	LGVPLKSAYVNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPSS*
Ga0070765_1008695672	3300006176	Soil	MRRGSGRLEVPLKSAYVNGIRKLSDLNRGQIVRLAGSGAAIVEKIWNEGDEYFGQFLCQDGLVVQLTEAEESMIGTLIKLSVV*
Ga0116129_10298942	3300009633	Peatland	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAAQSL*
Ga0116129_11179642	3300009633	Peatland	RFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF*
Ga0116135_11282231	3300009665	Peatland	MFGRFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGANYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAAQSL*
Ga0116135_13869641	3300009665	Peatland	LKSAYVNGIRKLCDLKRGQIVRLAGSGAAVVEDIWTLGANYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSQAQSL*
Ga0126357_12975091	3300010864	Boreal Forest Soil	MVPRRLGGFPLKSAYVNGIRKLSELRRGQVVRLAGSGAAVIEEIWNVGECYFGRFRCQDGLVVLLTEAEEAMIGTLTRLREVQPT*
Ga0126346_10408732	3300010865	Boreal Forest Soil	MIPRCLWGFPLRSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWNVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRLREVQPT*
Ga0126347_13740021	3300010867	Boreal Forest Soil	LKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWNVGECYFGRFRCQDGLVVLLTEAEESMIGTLTRLRAVQST*
Ga0150983_143188022	3300011120	Forest Soil	LKSAYVNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPSS*
Ga0137391_100066954	3300011270	Vadose Zone Soil	LKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRPSEVQPTLGLWP*
Ga0137390_102445023	3300012363	Vadose Zone Soil	YSALPWGFPLKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRPSEVQPTLGLWP*
Ga0137395_108936942	3300012917	Vadose Zone Soil	RKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRPSEVQPTLGLWP*
Ga0137419_109104342	3300012925	Vadose Zone Soil	YVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRPSEVQPTLGLWP*
Ga0181537_100225381	3300014201	Bog	LKSAYVTGIRKLSDLKRGQIVRLTGSGAAIVDDIWSAGGKYFGRFRCHDGLVVMLTEAEESMIATLTRMSTPSLFPDLEL*
Ga0182015_100769374	3300014495	Palsa	MRRGSGRLEVPLKSAYVNGIRKLSDLNRGQIVRLAGSGAAIVEKIWTEGDEYFGQFLCQDGLVVQLTEAEESMIGTLIKLSVV*
Ga0182015_101234362	3300014495	Palsa	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEADGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK*
Ga0182015_102533402	3300014495	Palsa	MGAIIVTFGNASRLCLGVAFWGFPLKSAYVNGIRKISELRRGQVVRLAGSGAAVVEEIWNVGECYFGRFRCQNGAVALLPAADEPMIGTLTRPREVQSIEGLWP*
Ga0182024_122150161	3300014501	Permafrost	LPLLGFPLKSAYVTGIRKLSELRKGQVVRLAGSGAAVVDALWTVGNESFGHFRCQDGLVVLLTEAEEAMIGTLTRQSVVEAV*
Ga0182030_105940261	3300014838	Bog	LIVLFALTIITLLSSVAPLWGFLLKSAYVNGIRKLADLRRGQVVRLDGSGAAVVEAIWTEGSEAIGRFRCQDGLVVLLTEAEESMIGTLTRQVRPVVRSV*
Ga0187863_103376991	3300018034	Peatland	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSQAQSL
Ga0210395_104854061	3300020582	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF
Ga0210395_106504771	3300020582	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVPVAQSL
Ga0210401_103260682	3300020583	Soil	LKSAYVNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPSS
Ga0210396_107633373	3300021180	Soil	LKSAYVHGIRRLRDLNRGQVVRLAGSGAAMVQDIWMEASGYFGRFQCHDGLCVVLTEAEEWMIGTLTRQK
Ga0210388_114486871	3300021181	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSL
Ga0210393_105958541	3300021401	Soil	LKSAYVNGIRRISELRRGQVVRLVGSGAAVVEEIWNLGEGYFGRFRCQDGLVVLLSEAEESMIGTLTRLRGVQTT
Ga0210393_108474892	3300021401	Soil	MPPDCVRGSPWGLPLKSAYVNGIRKLSELRRGQVVRLEGSGAAVIEEIWNVGECYFGRFRCQDGLVVLLTEAEEPMIGTLTRLRAVQTT
Ga0210386_100220659	3300021406	Soil	LKSAYVHGIRRLRDLNRGQIVRFAGSGAAVVEAVWMDGEQYFGRFQFHDGLSVVLTEAEEAMIGTLTRL
Ga0210383_103537831	3300021407	Soil	LKSAYVHGIRRLRDLNRGQVVRLAGSGAAMVQDIWMEASGYFGRFQCHDGLCVVLTEAE
Ga0210383_108035212	3300021407	Soil	LKSAYVNGIRKLSELRRGQVVRLEGSGAAVIEEIWNVGECHFGRFRCQDGLVVLLTEAEEPMIGTLTRLRAVQTT
Ga0210383_109930311	3300021407	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKV
Ga0210391_106573181	3300021433	Soil	VNGIRKLSDLKRGQIVRLAGSGAAVVEEIWVLGANYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF
Ga0210390_102787521	3300021474	Soil	AYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSL
Ga0210398_106698912	3300021477	Soil	MRRGSGRLEVPLKSAYVNGIRKLSDLNRGQIVRLAGSGAAIVEKIWNEGDEYFGQFLCQDGLVVQLTEAEESMIGTLIKLSVV
Ga0242658_12380631	3300022530	Soil	RVALGAPLKSAYVNGIRRISELRRGQVVRLVGSGAAVVEEIWNLGEGYFGRFRCQDGLVVLLSEAEESMIGTLTRLREVQTT
Ga0224549_10250221	3300022840	Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEADGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0208193_10597561	3300025463	Peatland	NSAKALCRFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF
Ga0208193_10664061	3300025463	Peatland	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAAQSL
Ga0208356_10998151	3300025504	Arctic Peat Soil	MRCFWGFPLNSAYVNGIRKLADLRRGQVVRLDGSGAAVVEAIWTEGSEAIGRFRCQDGLVVLLTEAEESMIGTLTRQGRPVMRSV
Ga0208691_10842361	3300025612	Peatland	GRFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGANYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAAQSL
Ga0179593_10519892	3300026555	Vadose Zone Soil	MIPHRLWGFPLKSAYVNGIRKLSELKRGQVVRLAGSGAAVIEEIWNVGECYFGRFRCQDGLLVLLTEAEEPMIGTLTRLREVQPT
Ga0209008_10890111	3300027545	Forest Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWMEASGYLGRFQCHDGLCVVLTEAEEGMIGTLTRQK
Ga0209222_10125802	3300027559	Forest Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEAGGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0209116_11335271	3300027590	Forest Soil	MFGRFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAAQAL
Ga0209420_11793281	3300027648	Forest Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVS
Ga0209248_100293532	3300027729	Bog Forest Soil	LEFPLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQSI
Ga0209139_100915673	3300027795	Bog Forest Soil	LKSAYVHGIRRLRDLNRGQVVRLAGSGAAMVQDIWMEASGYFGRFQCHDGLCVVLTEAEEWMIGTLTRQR
Ga0209139_102792922	3300027795	Bog Forest Soil	MVPICLWGFPLKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGESYFGRFRCQDGLVVLLTEAEEAMIGTLTRLNEVQPTLGLWP
Ga0209274_101091981	3300027853	Soil	LSDLKRGQIVRLAGSGAAVVEEIWVLGANYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF
Ga0209274_107313702	3300027853	Soil	LKSAYVHGIRRLRDLNRGQVVRLAGSGAAMVQDIWMEASGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0209166_100928241	3300027857	Surface Soil	LKSAYVNGIRKISELKRGQVVRLVGSGAAVVEEIWTVRESYFGRFRCHDGLVVLLTEAEEAMIGTLTRQSEVQPSLGLWP
Ga0209169_100817031	3300027879	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEAMIGTLTKVSAAQSL
Ga0209624_104579732	3300027895	Forest Soil	MPPDCVRGSPWGLPLKSAYVNGIRKLSELRRGQVVRLEGSGAAVIEEIWNVGECHFGRFRCQDGLVVLLTEAEEPMIGTLTRLRA
Ga0209624_105576212	3300027895	Forest Soil	MIIITFGNALRRLWGFPLKSAYVNGIRKLSELRRGQVVRLAGSGAAVIEEIWSVGECYFGRFRCQDGLVVLLTEAEEAMIGTLTRPREVQST
Ga0209006_104396112	3300027908	Forest Soil	LGVPLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEAMIGTLTKVSAAQSL
Ga0302225_102392352	3300028780	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQSYYGRFRCQDGLVVQLTEAEEALIGTLTKVPVAQSF
Ga0308309_100341381	3300028906	Soil	VNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPSS
Ga0311368_107191321	3300029882	Palsa	LKSAYVNGIRKLSELKRGQVVRLAGSGAAVVEEIWNVGECYFGHFRCQDGLVVLLTEAEEAMIGTLTRLREVQSTEGLWP
Ga0311340_103139591	3300029943	Palsa	LKSAYVHGIRRLRDLNRGQIVRFAGSGAAVVQDIWMEANQYFGRFQFHDGLCVVLTEAEESM
Ga0311352_100873644	3300029944	Palsa	LNRGQIVRFAGSGAAVVQDIWMEANQYFGRFQFHDGLCVVLTEAEESMIGTLTRQK
Ga0311352_104775281	3300029944	Palsa	MPTSCLWGFPLKSAYVNGIRKLSELKRGQVVRLAGSGAAVVEEIWNVGECYFGHFRCQDGLVVLLTEAEEAMIGTLTRLREVQSTEGLWP
Ga0311339_110130981	3300029999	Palsa	LKSAYVNGIRKLCDLKRGQIVRLAGSGAAVVEDIWTLGANYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSQAQSL
Ga0311339_112356551	3300029999	Palsa	LKSAYVNGIRKLSDLKRGQIVRLTGSGAAVVEEIWTLGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSAAQSL
Ga0311338_105279792	3300030007	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAVQSL
Ga0311338_107541451	3300030007	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIG
Ga0302177_103823162	3300030053	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTK
Ga0302177_104150071	3300030053	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVPVAQSF
Ga0302179_100097822	3300030058	Palsa	LKSAYVHGIRRLRDLNRGQIVRFAGSGAAVVQDIWMEANQYFGRFQFHDGLCVVLTEAEESMIGTLTRQK
Ga0311370_101955603	3300030503	Palsa	VNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAVQSL
Ga0311370_124604821	3300030503	Palsa	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEADGYLGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0311354_112359622	3300030618	Palsa	NGIRKLSDLKRGQIVRLAGSGAAVVEEIWALGENYYGRFRCQDGLVVQLTEAEEAMIGTLTKVSVAQPF
Ga0311354_113972851	3300030618	Palsa	KLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQTL
Ga0265771_10128821	3300031010	Soil	LKSAYVNGIRKLSELKRGQIVRLAGSGAAVVEEIWTLGGECFGRFRCQDGLVVSLSEAEEALIGTLTKLSVAPAS
Ga0170834_1141289812	3300031057	Forest Soil	MIPHRLWGFPLKSAYVNGIRKLSELKRGQVVRLAGSGAAVIEELWNVGECYFGRFRCQDGLLVLLTEAEEPMIGTLTRLREVQPT
Ga0170824_1221510502	3300031231	Forest Soil	MIPRCLWGFPLKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWTVGEGYFGRFRCQDGLVVLLTEAEEAMIGTLTRLREVQSA
Ga0170824_1261032082	3300031231	Forest Soil	MIPHRLWGFPLKSAYVNGIRKLSELKRGQVVRLAGSGAAVIEELWNVGECYFGRFRCQDGLLVLLTEAEEPLIGTLTRLREVQPT
Ga0302325_101278248	3300031234	Palsa	VNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQTL
Ga0302325_118752492	3300031234	Palsa	IRPHLSRFGGSHLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKVSAVQSL
Ga0302324_1002233043	3300031236	Palsa	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVSVAQTL
Ga0302324_1003153101	3300031236	Palsa	RSRLPLGVPLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGEKYFARFRCQDGLVVQLTEAEEAMIGTLTKVSVAQSL
Ga0302324_1027372651	3300031236	Palsa	LSDLKRGQIVRLAGSGAAVVEEIWTLKDEYFGRFRCQDGLVVSLTEAEEAMIGTLTKLSAAPPR
Ga0302140_109627891	3300031261	Bog	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEHLWFEEGACYGRFRCQDGLVVQLTEAEEAMIGTLTKMSMAS
Ga0302326_136511081	3300031525	Palsa	MFGRFGGSLLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASYYARFRCQDGLVVQLTEAEEGMIGTLTKV
Ga0310686_10418338714	3300031708	Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEAGGYFGRFQCHDGLSVVLTEAEESMIGTLTRQK
Ga0310686_1093565082	3300031708	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTVGENYYARFRCQDGLVVQLTEAEEAMIGTLTKVSAVQPL
Ga0310686_1098743261	3300031708	Soil	LKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEANGYFGRFQCHDGLCVVLTEAEESMIGTLTRHR
Ga0310686_1104120741	3300031708	Soil	LKSAYVNGIRKLSDLKRGQIVRLTGSGAAVVEDIWTLGDNYYGRFRCQDGLVVQLTEAEEAMIGTLTKVTAAQSL
Ga0310686_1136526722	3300031708	Soil	LKSAYVNGIRKISELKRGQVVRMAGSGAAVVDEIWNVGECYFGRFRCHDGLVVLLSEAEEAMIGTLTRLSEVQST
Ga0310686_1145799696	3300031708	Soil	MRRGSGRLEVPLKSAYVNGIRKLSDLNRGQIVRLAGSGAAIVEKIWAEGDEYFGQFLCQDGLVVQLTEAEESMIGTLIKLSVV
Ga0310686_1148251981	3300031708	Soil	LKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGASHYARFRCQDGLVVQLTEAEEGMIGTLTKVTAVRTL
Ga0307476_112009802	3300031715	Hardwood Forest Soil	LKSAYVNGIRKISELKRGQVVRLIGSGAAVVEEIWNVGEGYFGRFRCQDGLVVLLSEAEESMIGTLTRLREVQSA
Ga0307474_103701102	3300031718	Hardwood Forest Soil	MGTIIITFGNRFKLPWGFPLKSAYVNGVRKISELKRGQVVRLVGSGAAVVEEIWSLGEGYFGRFKCQDGLVVLLSEAEEAMIGTLTRLREVQPT
Ga0307478_105005122	3300031823	Hardwood Forest Soil	MIIITFGNVLRCLWGFPLKSAYVNGIRKLSELRRGQVVRLAGSGAAVIEEIWSVGECYFGRFRCQDGLVVLLTEAEEAMIGTLTRPREVQST
Ga0334850_025268_668_838	3300033828	Soil	LNRGQIVRLAGSGAAMVQDIWLEADGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0370483_0090538_120_332	3300034124	Untreated Peat Soil	MKSAYVHGIRRLRDLNRGQIVRLAGSGAAMVQDIWLEADGYFGRFQCHDGLCVVLTEAEESMIGTLTRQK
Ga0370515_0022340_217_456	3300034163	Untreated Peat Soil	LEFPLKSAYVNGIRKLSDLKRGQIVRLAGSGAAVVEEIWTLGQNYYGRFRCQDGLVVQLTEAEEALIGTLTKVAVAQSL
Ga0370515_0075618_321_548	3300034163	Untreated Peat Soil	LKSAYVNGIRKISELKRGQVVRLAGSGAAVIEEIWSVGECYFGRFRCQDGLVVLLTEAEESMIGTLTRLRAVQST
Ga0370515_0187880_595_882	3300034163	Untreated Peat Soil	MGTIIVTFGNASRLCLGVAFWGFPLKSAYVNGIRKISELRRGQVVRLAGSGAAVIEEIWSVGECYFGRFRCQDGLVVLLTEAEESMIGTLTRLGAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077553

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences