Metagenome / Metatranscriptome Family F077527

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077527
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	41 residues
Representative Sequence	ETAVAEAKREAGAANFEKLLRGALQSLSAPKGRAARGA
Number of Associated Samples	95
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.29 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.906 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.897 % of family members)
Environment Ontology (ENVO)	Unclassified (32.479 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.282 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 0.00% Coil/Unstructured: 59.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF05496	RuvB_N	83.76
PF01872	RibD_C	2.56
PF01435	Peptidase_M48	1.71
PF03928	HbpS-like	1.71
PF13946	DUF4214	1.71
PF00766	ETF_alpha	0.85
PF14200	RicinB_lectin_2	0.85
PF13360	PQQ_2	0.85
PF01288	HPPK	0.85
PF13103	TonB_2	0.85
PF13649	Methyltransf_25	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	83.76
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.56
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.56
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	0.85
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.76 %
Unclassified	root	N/A	16.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.91 %
Unclassified	root	N/A	16.24 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.09 %
Unclassified	root	N/A	16.24 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.53 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.26 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.85 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.26 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.85 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.85 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.26 %
Verrucomicrobia bacterium ADurb.Bin118	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	0.85 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.85 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.85 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.85 %
Verrucomicrobia bacterium ADurb.Bin118	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	0.85 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.85 %
Verrucomicrobia bacterium ADurb.Bin118	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	0.85 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
unclassified Paenibacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Verrucomicrobia bacterium ADurb.Bin118	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	0.85 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.53 %
Paenibacillus sp. P22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Verrucomicrobia bacterium ADurb.Bin118	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	0.85 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.85 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1012824	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300001545\|JGI12630J15595_10009369	All Organisms → cellular organisms → Bacteria → Acidobacteria	2111	Open in IMG/M
3300001661\|JGI12053J15887_10101592	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300002245\|JGIcombinedJ26739_100112028	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2563	Open in IMG/M
3300002245\|JGIcombinedJ26739_100673902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300002245\|JGIcombinedJ26739_101408224	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300002558\|JGI25385J37094_10104515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	833	Open in IMG/M
3300003350\|JGI26347J50199_1045022	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300003505\|JGIcombinedJ51221_10361661	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300005174\|Ga0066680_10114046	Not Available	1666	Open in IMG/M
3300005175\|Ga0066673_10286151	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	959	Open in IMG/M
3300005176\|Ga0066679_10921260	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300005537\|Ga0070730_10041640	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3380	Open in IMG/M
3300005537\|Ga0070730_10102575	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300006176\|Ga0070765_100699420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300006176\|Ga0070765_101850901	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300006358\|Ga0068871_101229159	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300006794\|Ga0066658_10659529	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300007255\|Ga0099791_10419167	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300007258\|Ga0099793_10637663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300009089\|Ga0099828_10773474	All Organisms → cellular organisms → Bacteria → Acidobacteria	860	Open in IMG/M
3300009143\|Ga0099792_10420401	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300010046\|Ga0126384_11322122	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300010304\|Ga0134088_10670306	Not Available	519	Open in IMG/M
3300010337\|Ga0134062_10052645	Not Available	1661	Open in IMG/M
3300010366\|Ga0126379_12776828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300010366\|Ga0126379_13456804	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300010373\|Ga0134128_12242125	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300010396\|Ga0134126_12404025	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300011269\|Ga0137392_10591461	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300011270\|Ga0137391_11288792	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300011271\|Ga0137393_10610502	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300012189\|Ga0137388_10024434	All Organisms → cellular organisms → Bacteria	4605	Open in IMG/M
3300012189\|Ga0137388_11628840	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012189\|Ga0137388_11762900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300012202\|Ga0137363_10010647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5876	Open in IMG/M
3300012202\|Ga0137363_10088425	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300012202\|Ga0137363_10361796	Not Available	1203	Open in IMG/M
3300012203\|Ga0137399_10118260	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300012203\|Ga0137399_10970782	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300012206\|Ga0137380_10738618	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300012206\|Ga0137380_11329781	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300012206\|Ga0137380_11335625	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300012207\|Ga0137381_11140964	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300012211\|Ga0137377_11221079	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300012351\|Ga0137386_10635640	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300012357\|Ga0137384_10681830	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300012359\|Ga0137385_10764305	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300012361\|Ga0137360_10811653	Not Available	805	Open in IMG/M
3300012361\|Ga0137360_10857714	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300012361\|Ga0137360_11052946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300012362\|Ga0137361_10865082	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300012918\|Ga0137396_10513631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin118	888	Open in IMG/M
3300012927\|Ga0137416_10158616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1779	Open in IMG/M
3300012929\|Ga0137404_11745200	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300012930\|Ga0137407_10146877	All Organisms → cellular organisms → Bacteria	2080	Open in IMG/M
3300013832\|Ga0120132_1115195	All Organisms → cellular organisms → Eukaryota → Opisthokonta	573	Open in IMG/M
3300015053\|Ga0137405_1203352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1819	Open in IMG/M
3300015053\|Ga0137405_1223346	Not Available	1472	Open in IMG/M
3300015053\|Ga0137405_1223434	Not Available	1326	Open in IMG/M
3300015357\|Ga0134072_10478440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300016387\|Ga0182040_11017642	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300016750\|Ga0181505_10852940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1771	Open in IMG/M
3300017927\|Ga0187824_10264447	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300017934\|Ga0187803_10444967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300017974\|Ga0187777_10493568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300018431\|Ga0066655_11202173	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300018482\|Ga0066669_10594842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	969	Open in IMG/M
3300019240\|Ga0181510_1168024	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300020579\|Ga0210407_10843112	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300020580\|Ga0210403_10019800	All Organisms → cellular organisms → Bacteria → Acidobacteria	5376	Open in IMG/M
3300020580\|Ga0210403_10296451	Not Available	1325	Open in IMG/M
3300020580\|Ga0210403_11449096	Not Available	518	Open in IMG/M
3300020582\|Ga0210395_10056593	All Organisms → cellular organisms → Bacteria → Acidobacteria	2874	Open in IMG/M
3300021088\|Ga0210404_10785179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300021178\|Ga0210408_10336788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1203	Open in IMG/M
3300021406\|Ga0210386_11080435	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300021477\|Ga0210398_10460885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300021560\|Ga0126371_12465228	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300022731\|Ga0224563_1019550	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300024288\|Ga0179589_10020402	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2180	Open in IMG/M
3300026215\|Ga0209849_1005484	All Organisms → cellular organisms → Bacteria → Acidobacteria	2041	Open in IMG/M
3300026304\|Ga0209240_1150074	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	730	Open in IMG/M
3300026304\|Ga0209240_1282470	Not Available	512	Open in IMG/M
3300026325\|Ga0209152_10446820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300026333\|Ga0209158_1063456	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1473	Open in IMG/M
3300026343\|Ga0209159_1271111	Not Available	517	Open in IMG/M
3300026529\|Ga0209806_1010752	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4931	Open in IMG/M
3300026551\|Ga0209648_10143347	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300026557\|Ga0179587_10498128	Not Available	799	Open in IMG/M
3300026999\|Ga0207949_1004727	Not Available	1221	Open in IMG/M
3300027334\|Ga0209529_1070122	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300027480\|Ga0208993_1091499	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300027512\|Ga0209179_1123360	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300027565\|Ga0209219_1136891	Not Available	593	Open in IMG/M
3300027643\|Ga0209076_1227994	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300027667\|Ga0209009_1027280	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300027671\|Ga0209588_1013432	All Organisms → cellular organisms → Bacteria	2496	Open in IMG/M
3300027846\|Ga0209180_10111785	Not Available	1562	Open in IMG/M
3300027857\|Ga0209166_10006529	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7847	Open in IMG/M
3300027884\|Ga0209275_10454012	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300027903\|Ga0209488_10848844	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300028047\|Ga0209526_10720226	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300031720\|Ga0307469_10412353	Not Available	1157	Open in IMG/M
3300031744\|Ga0306918_10022408	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300031753\|Ga0307477_10309211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1090	Open in IMG/M
3300031754\|Ga0307475_10500881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300031754\|Ga0307475_10500971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300031820\|Ga0307473_10501968	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300031954\|Ga0306926_10470858	Not Available	1546	Open in IMG/M
3300031962\|Ga0307479_11207412	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300032091\|Ga0318577_10058699	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300032180\|Ga0307471_100308206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1674	Open in IMG/M
3300032180\|Ga0307471_103808007	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300032770\|Ga0335085_12218029	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.87%
Aquatic	Environmental → Aquatic	4.27%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.87%
Freshwater	Environmental → Aquatic → Freshwater	4.27%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.78%
Loam	Environmental → Terrestrial → Soil → Loam	14.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.56%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.11%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	35.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.56%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.71%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10128242	3300001089	Forest Soil	AAETAVAEAKRETGAANFEKLLRSALQSLSAPKGRAARGA*
JGI12630J15595_100093691	3300001545	Forest Soil	ESAVTEAKQEVGTASFEKLLRASLQSLSAPKGRSTRAGT*
JGI12053J15887_101015921	3300001661	Forest Soil	RAAETAVAEAKREAGTGNFEKLLRGALQSLSAPKGRAART*
JGIcombinedJ26739_1001120283	3300002245	Forest Soil	TEAKQEVGTASFEKLLRASLQSLSAPKGRSTRAGT*
JGIcombinedJ26739_1006739021	3300002245	Forest Soil	ENAVTEARRESSGANFEKLLRASLQTLSAPKGRAART*
JGIcombinedJ26739_1014082241	3300002245	Forest Soil	EKTVDEARKESGSANFEKLLRAALQALSQSKGRAARTS*
JGI25385J37094_101045151	3300002558	Grasslands Soil	RAAETAVGDAKREAGAGNFEKLLRGALQSLSTPKGRAARGA*
JGI26347J50199_10450222	3300003350	Bog Forest Soil	YDSRAAESAVAEAKREAGSTNFDKLLRATLQSLAAPKGRSAKGAA*
JGIcombinedJ51221_103616612	3300003505	Forest Soil	AETAVGEAKREAGTTNFERLLRAALQSLAAPKGRTSHAGA*
Ga0066680_101140461	3300005174	Soil	GYDGRAAETAVGEAKSQAGAGNFEQLLRGALQSLSAPKGRAARGA*
Ga0066673_102861511	3300005175	Soil	AETAVGEAKRAAGAANFEKLLRGALQSLSAPKGRAARGA*
Ga0066679_109212601	3300005176	Soil	AAETAATEAKQEVGTTSFEKLLRAALQSLSAPKSRSTRASA*
Ga0070730_100416401	3300005537	Surface Soil	YDARTAESAVAEAKQEAGTASFEKLLRASLQSLTAPKSRSPRLNA*
Ga0070730_101025751	3300005537	Surface Soil	YDARTAESAVAEAKQEAGTASFEKLLRASLQSLTAPKSRSNRVG*
Ga0070765_1006994201	3300006176	Soil	GYDQRVAETAVGEAKREVGSVNFEKMLRGALQILNTPKGRAARP*
Ga0070765_1018509012	3300006176	Soil	VVEAKREAGTTDFERLLRSALQSLAAPKGRPTHAGA*
Ga0068871_1012291592	3300006358	Miscanthus Rhizosphere	TAETAVTEAKAEAGASNFEKLLRASLQVLSAPKGRAARP*
Ga0066658_106595292	3300006794	Soil	YETRAAESAVADGKREVGAKDFEKLLRGSLQALSSPNSRAARG*
Ga0099791_102461121	3300007255	Vadose Zone Soil	EADVISELVNLGYDGRTAEGAAGEAKRAAGTGNFEKLLRAALQSLTAPKGRSARSGT*
Ga0099791_104191671	3300007255	Vadose Zone Soil	ETAVAEAKREAGAANFEKLLRGALQSLSAPKGRAARGA*
Ga0099793_106376632	3300007258	Vadose Zone Soil	AVGEAKREAGAANFEKLLRGALQSLSAPKGRAARGA*
Ga0099828_107734742	3300009089	Vadose Zone Soil	VNLGYDGRAAEGAVGEAKRAAGTANFEKLLRAALQSLTAPKGRAARP*
Ga0099792_104204012	3300009143	Vadose Zone Soil	AVGDAKPEVGAGNFEKLLRGALQALSAPKGRTARGV*
Ga0126384_113221222	3300010046	Tropical Forest Soil	AESAVTEAKRSGASGNFEKLLRAALQVLSAPKGRAATGA*
Ga0134088_106703061	3300010304	Grasslands Soil	AHEQRAAEDAAAEGKREAGANNFETLLRAALQTLSAPKGRAARTA*
Ga0134062_100526451	3300010337	Grasslands Soil	RAAIEADVTSAVVSLGYAGRAPETAVGEAKSQAGAGNFEKLLRGALQSLSAPKGRAARGA
Ga0126379_127768281	3300010366	Tropical Forest Soil	TRAAEDAAAEAKPAAGAANFEKLLRAALQSLSAPKGRVARTS*
Ga0126379_134568042	3300010366	Tropical Forest Soil	LGYDARAAEDAAAEAKREAGASNFEKLLRASLQTLSAPKGRAARSG*
Ga0134128_122421251	3300010373	Terrestrial Soil	TAVAEAKREAGSGANFEKMLRAALQILSAPKGRAART*
Ga0134126_124040252	3300010396	Terrestrial Soil	ARTAEGAVGEAKRETGTRNFEQLLRTSLQVLSAPKGRAARS*
Ga0137392_105914611	3300011269	Vadose Zone Soil	NAVAEAKHEAGTSSFEKLLRASLQSLSTPKGRSTRAGA*
Ga0137391_112887921	3300011270	Vadose Zone Soil	ENAVAEAKHEAGTSSFEKLLRASLQSLSAPKGRSTRAGA*
Ga0137393_106105021	3300011271	Vadose Zone Soil	TAAAEAKQEVGATSFEKLLRAALQSLSAPKSRSARAQ*
Ga0137388_100244347	3300012189	Vadose Zone Soil	GAVGEAKRAAGTGNFEKLLRAALQSLTAPKGRAARP*
Ga0137388_116288402	3300012189	Vadose Zone Soil	EGAVGEAKRAAGTANFEKLLRAALQSLTAPKGRAARP*
Ga0137388_117629002	3300012189	Vadose Zone Soil	VGEAKRETGAGNFEKLLRGALQSLSAPKGRAARGA*
Ga0137363_100106471	3300012202	Vadose Zone Soil	GRAAETAVAEAKREAGAGNFEKLLRGALQSLSAPKGRAARGA*
Ga0137363_100884251	3300012202	Vadose Zone Soil	DAVGEAKRTAGTANFEKLLRVALQSLTAPKGRSARSGS*
Ga0137363_103617961	3300012202	Vadose Zone Soil	AEAKQEVGTTSFEKLLRAALQSLSAPKSRSTRASA*
Ga0137399_101182604	3300012203	Vadose Zone Soil	VGEAKREAGAGNFEKLLRGTLQSLSAPKGKAARP*
Ga0137399_109707822	3300012203	Vadose Zone Soil	GYDGRAAETAVAEAKRETGAANFEKLLRGALQSLSAPKGRAARGA*
Ga0137380_107386182	3300012206	Vadose Zone Soil	GYDARAAETAVGEAKREAGAGNFEKLLRGTLQSLSAPKGRAARGA*
Ga0137380_113297812	3300012206	Vadose Zone Soil	ARAAEGAVGEAKREAGGGNFEKLLRAALQSLTAPKGRSARGTA*
Ga0137380_113356252	3300012206	Vadose Zone Soil	ARAAEGAVGEAKREAGGGNFEKLLRAALQSLTAPKGRSARGAA*
Ga0137381_111409642	3300012207	Vadose Zone Soil	AAEDAAAGAKRETGAGNFEKLLRAALQSLSAPKARASKA*
Ga0137377_112210792	3300012211	Vadose Zone Soil	GYDARAAEGAVGEAKREAGAGNFEKLLRAALQSLSAPKGRSARGTA*
Ga0137386_106356402	3300012351	Vadose Zone Soil	VGEAKREAGAGNFEKLLRGTLQSLSAPKGRAARSA*
Ga0137384_106818302	3300012357	Vadose Zone Soil	AETAVGEAKREAGAGNFEKLLRGTLQSLSAPKGRAARGA*
Ga0137385_107643051	3300012359	Vadose Zone Soil	RAAEDAAAEAKREAIANDFETLLRAALQTLNAPKGRAARTA*
Ga0137360_108116531	3300012361	Vadose Zone Soil	AENAVGEAKQEVGTGSFEKLLRASLQSLSAPKGRSTRAGT*
Ga0137360_108577142	3300012361	Vadose Zone Soil	LVNLGYEGRAAEAAVGDAKPEVGAGNFEKLLRGALQAVSAAKGRTARGA*
Ga0137360_110529463	3300012361	Vadose Zone Soil	VNLGYDGRAAETAVGEAKRDAGAENFEKLLRGALQSLSAPKGRAARGA*
Ga0137361_108650821	3300012362	Vadose Zone Soil	AVGEAKREAGAGNFEKLLRGTLQSLSAPKGKAARP*
Ga0137396_105136311	3300012918	Vadose Zone Soil	AVGEAKRAAGTANFEKLLRAALQSLTAPKGRAARP*
Ga0137416_101586161	3300012927	Vadose Zone Soil	NLGYDGRAAETAVAEAKREAGAGNFEKLLRGALQSLSAPKGRAARGA*
Ga0137404_117452001	3300012929	Vadose Zone Soil	AETAVGEAKREAGAGNFEKLLRGTLQSLSAPKGKAARP*
Ga0137407_101468773	3300012930	Vadose Zone Soil	EARAAESAVADARHENGAGNFEKLLRASLQALSAPKGRAARP*
Ga0120132_11151952	3300013832	Permafrost	EKTVEEARKESGAANFEKLLRAALQALSQSKGRAARTS*
Ga0137405_12033523	3300015053	Vadose Zone Soil	GYEGRAAETAVGEAKREAGAGNFEKLLRGALQSLSAPKGRAARSA*
Ga0137405_12233461	3300015053	Vadose Zone Soil	ESRIVNLGYEGRAAETAVGEAKREAGAGNFEKLLRGALQSLSAPKGRAARSA*
Ga0137405_12234342	3300015053	Vadose Zone Soil	AAETAVGDAKREAGAGNFEKLLRGTLQSLSAPKGKAARP*
Ga0134072_104784402	3300015357	Grasslands Soil	AAEGKREAGANNFETLLRAALQTLSAPKGRAARTA*
Ga0182040_110176422	3300016387	Soil	AVAEAKREAGANNFEKLLRSSLQALSATKGRAARGA
Ga0181505_108529403	3300016750	Peatland	DERSADSAVVEAKRAAGDANFEKLLRVALGTLTAPQNR
Ga0187824_102644471	3300017927	Freshwater Sediment	STVAEAKREAGAANFEKLLRSALQTLSAPKGRSARGAA
Ga0187803_104449672	3300017934	Freshwater Sediment	ESAVGEAKREAGTADFEKLLRAALQALSAPKGRAARGA
Ga0187777_104935681	3300017974	Tropical Peatland	RAAESAVAEAKRAGGAGDFEKLLRVALQALSAPKGRAAGNA
Ga0066655_112021731	3300018431	Grasslands Soil	TAVGEAKSQAGAGNFEQLLRGALQSLSAPKGRAARGA
Ga0066669_105948421	3300018482	Grasslands Soil	LGYDGRAAETAVGEAKSQAGAGNFEKLLRGALQSLSAPKGRSARGA
Ga0181510_11680241	3300019240	Peatland	LVNLGYDGRNAESAVAEAKREAGTANFDKLLRATLQSLAAPKGRSAKGAA
Ga0210407_108431121	3300020579	Soil	LGYDSRAAETAVGEAKREAGAGNFEKLLRGTLQSLSAPKGRAARP
Ga0210403_100198006	3300020580	Soil	RAAENAVSEAKQEAGTASFEKLLRASLQSLSAPKGRSTRVSA
Ga0210403_102964512	3300020580	Soil	SRAAETAVGEAKREAGAGNFEKLLRGTLQSLSAPKGRAARP
Ga0210403_114490962	3300020580	Soil	RLAENAVAQAKREAGVGNFEKLLRAGLQALSAPKSRAAKTP
Ga0210395_100565937	3300020582	Soil	ETAVAEAKREAGSGANFEKMLRAALQILSAPKGRAARP
Ga0210404_107851791	3300021088	Soil	ESAVGEAKREAGSSNFEKLLRAALQALSAPKGRAARTT
Ga0210408_103367881	3300021178	Soil	GRAAETAVGEAKREAGAVNFEKLLRGALQALSAPKGRAARGA
Ga0210386_110804351	3300021406	Soil	AAETAVAEAKREAGSGANFEKMLRAALQILSAPKGRAARP
Ga0210390_116471342	3300021474	Soil	ALVNLDYDARTAETAAAEAKRETGTTNFEKLLRATLQSLAAPKGRTTHAGA
Ga0210398_104608851	3300021477	Soil	EYAAGEAKREAGTTNFEKLLRAALQSLAAPKGRTTNAGA
Ga0126371_124652281	3300021560	Tropical Forest Soil	AAEDAAAEAKREAGANNFETLLRAALQALSAPKGRAARTA
Ga0224563_10195502	3300022731	Soil	AVSEAKREVGASNFERLLRAALQSLSAPKGRTTHVGA
Ga0179589_100204023	3300024288	Vadose Zone Soil	GYDARAAETAATEAKQEVGTTSFEKLLRAALQSLSAPKSRSTRASA
Ga0209849_10054844	3300026215	Soil	AEKTVEEARKESGAANFEKLLRAALQALSQSKGRAARTS
Ga0209240_11500741	3300026304	Grasslands Soil	RAAENAVAEAKHEAGTSSFEKLLRASLQSLSAPKGRSTRVGA
Ga0209240_12824701	3300026304	Grasslands Soil	GYDGRAAENAVSEAKREAGTTHFEKLLRAALKSLTAPKGRSTRAGA
Ga0209152_104468201	3300026325	Soil	ETAVSEAKREAGAANFEKLLRGALQLLSAPKGRAARGA
Ga0209158_10634561	3300026333	Soil	AETAVAEAKREAGAGNFEKLLRGALQSLSAPKGRAARI
Ga0209159_12711112	3300026343	Soil	KAVEEAKGAAGTGNFEKLLRSTLQTLSQPKGRAARTA
Ga0209806_10107527	3300026529	Soil	NLGYDGRAAETAVGEAKSQAGAGNFEQLLRGALQSLSAPKGRAARGA
Ga0209648_101433471	3300026551	Grasslands Soil	VGEAKREAGAANFEKLLRGALQLLSAPKGRAARGA
Ga0179587_104981281	3300026557	Vadose Zone Soil	AVGEAKQEVGTGSFEKLLRASLQSLSAPKGRSTRAGT
Ga0207949_10047272	3300026999	Forest Soil	DGRTAESAVGEAKREAGVTHFEKLLRASLQALSTPKGRSTRAGA
Ga0209529_10701221	3300027334	Forest Soil	RAAETAVAEAKREAGSASFEKMLRAALQSLSAPKGRAARP
Ga0208993_10914992	3300027480	Forest Soil	DGRAAETAVAEAKREAGAANFEKLLRGALQSLSAPKGRAARGA
Ga0209179_11233602	3300027512	Vadose Zone Soil	EAAATEAKQEVGTTSFEKLLRAALQSLSAPKSRSTRASA
Ga0209219_11368911	3300027565	Forest Soil	YDTRAAENAASEAKQEVGTASFEKLLRAALQSLSAPKGRSTRAGA
Ga0209076_12279942	3300027643	Vadose Zone Soil	DGRAAETAVAEARREVGVANFEKLLRGALQSLSAPKGRAARI
Ga0209009_10272801	3300027667	Forest Soil	VGEARKESGSANFEKLLRAALQALSQSKGRAARTS
Ga0209588_10134321	3300027671	Vadose Zone Soil	YDGRTAGGAVGEAKRAAGTGNFEKLLRAALQSLTAPKGRSARSGT
Ga0209180_101117851	3300027846	Vadose Zone Soil	ETAVGDAKSEAGASNFEKLLRGALQSLSAPKGRAARGA
Ga0209166_100065291	3300027857	Surface Soil	GYDARTAESAVAEAKQEAGTASFEKLLRASLQSLTAPKSRSPRLNA
Ga0209275_104540122	3300027884	Soil	RAAESAASEAKSEAGASNFEKLLRASLQSLAAPKGRATHAGD
Ga0209488_108488441	3300027903	Vadose Zone Soil	GYDGRAAETAVGDAKHEAGASNFEKLLRGALQSLSAPKGRAARGA
Ga0209526_107202262	3300028047	Forest Soil	AEKTVDEARKESGSANFEKLLRAALQGLSQNKGRAARAS
Ga0307469_104123531	3300031720	Hardwood Forest Soil	AEGAVGDAKRVAGAANFEKLLRAALQSLTTPKGRAARSA
Ga0306918_100224081	3300031744	Soil	TRAAEDAAAEAKREAGANNFETLLRAALQTLSAPKGRAARTA
Ga0307477_103092112	3300031753	Hardwood Forest Soil	NAVGEAKHEAGTASFEKLLRASLQSLSAPKGRTTRAGA
Ga0307475_105008812	3300031754	Hardwood Forest Soil	GYDGRAAETAVGEAKREAGTGNFEKLLRGALQALSAPKGRAARGA
Ga0307475_105009712	3300031754	Hardwood Forest Soil	PAESAVADARRENGSGNFEKLLRASLQALSTPKGRAART
Ga0307473_105019681	3300031820	Hardwood Forest Soil	TAVGEAKREAGAGNFEKLLRGALQSLSAPKGRAARSA
Ga0306926_104708582	3300031954	Soil	AAEAKREAGASNFEKLLRAALQTLSAPKGRAARTG
Ga0307479_112074122	3300031962	Hardwood Forest Soil	VNLGYDARAAETAVGEAKRETGAGNFEKLLRGTLQSLSAPKGRAARGV
Ga0318577_100586991	3300032091	Soil	DTRAAEDAAAEAKREAGANNFETLLRAALQTLSAPKGRAARTA
Ga0307471_1003082061	3300032180	Hardwood Forest Soil	LVNLGYDGRAAESAVGEAKRDAGGGNFEKLLRGALQSLSAPKGRAARGA
Ga0307471_1038080071	3300032180	Hardwood Forest Soil	AVGEAKRTAGTANFEKLLRAALQSLAAPKGRSARSGS
Ga0335085_122180292	3300032770	Soil	QRAAETAVVEAKREAGSGANFEKMLRAALQILSTPKGRAATR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077527

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences