Metagenome / Metatranscriptome Family F077517

Overview

Basic Information

• Family ID: F077517
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 117
• Average Sequence Length: 57 residues
• Representative Sequence: RLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDAIKAILDYRAAHQFQAQP
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 96
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (21.367 % of family members)
• Environment Ontology (ENVO): Unclassified (30.769 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.573 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 53.57%
  β-sheet: 0.00%
  Coil/Unstructured: 46.43%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.97.1.0: automated matches	d7k86a2	7k86	0.72352
a.97.1.0: automated matches	d2cfoa2	2cfo	0.70675
a.4.5.34: SCF ubiquitin ligase complex WHB domain	d1ldda_	1ldd	0.67911
a.4.5.0: automated matches	d4q48a3	4q48	0.67191
a.4.5.0: automated matches	d3l7wa_	3l7w	0.66617

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF02702	KdpD	5.98
PF04255	DUF433	5.98
PF01008	IF-2B	5.13
PF05016	ParE_toxin	2.56
PF00582	Usp	1.71
PF01844	HNH	1.71
PF07586	HXXSHH	1.71
PF02774	Semialdhyde_dhC	0.85
PF05685	Uma2	0.85
PF04185	Phosphoesterase	0.85
PF00709	Adenylsucc_synt	0.85
PF01855	POR_N	0.85
PF12704	MacB_PCD	0.85
PF17147	PFOR_II	0.85
PF08448	PAS_4	0.85
PF03328	HpcH_HpaI	0.85
PF00764	Arginosuc_synth	0.85
PF07670	Gate	0.85
PF13307	Helicase_C_2	0.85
PF13586	DDE_Tnp_1_2	0.85
PF02410	RsfS	0.85
PF05015	HigB-like_toxin	0.85
PF00282	Pyridoxal_deC	0.85
PF13349	DUF4097	0.85
PF00583	Acetyltransf_1	0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	5.98
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	5.98
COG0182	5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit	Amino acid transport and metabolism [E]	5.13
COG1184	Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	Translation, ribosomal structure and biogenesis [J]	5.13
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.85
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.85
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.85
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.85
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.85
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.85
COG0799	Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits	Translation, ribosomal structure and biogenesis [J]	0.85
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.85
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.85
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	0.85
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.85
COG0104	Adenylosuccinate synthase	Nucleotide transport and metabolism [F]	0.85
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.85

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.87%
Host-Associated	Host-Associated	5.13%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.38%
Aquatic	Environmental → Aquatic	26.50%
Plants	Host-Associated → Plants	5.13%

Category

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	35.04%
Soil	Environmental → Terrestrial → Soil	33.33%
Freshwater	Environmental → Aquatic → Freshwater	23.08%
Sediment	Environmental → Aquatic → Sediment	3.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.42%
Roots	Host-Associated → Plants → Roots	0.85%
Peat Moss	Host-Associated → Plants → Peat Moss	0.85%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	35.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.22%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Lake	Environmental → Aquatic → Freshwater → Lake	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.56%
Loam	Environmental → Terrestrial → Soil → Loam	1.71%
Ice	Environmental → Aquatic → Freshwater → Ice	0.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.85%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	35.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.69%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.71%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	21.37%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.42%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.42%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.56%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.56%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.71%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.85%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.85%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.85%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010379	Sb_50d combined assembly	Environmental
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental
3300022222	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 (v2)	Environmental
3300022561	Borup_combined assembly	Environmental
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental
3300028860	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3	Environmental
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental
3300029883	I_Bog_E2 coassembly	Environmental
3300029907	I_Bog_N1 coassembly	Environmental
3300029910	III_Palsa_E2 coassembly	Environmental
3300029911	III_Bog_N2 coassembly	Environmental
3300029917	I_Bog_E1 coassembly	Environmental
3300029922	III_Fen_E1 coassembly	Environmental
3300029945	I_Bog_N2 coassembly	Environmental
3300029954	I_Bog_N3 coassembly	Environmental
3300029955	II_Bog_E2 coassembly	Environmental
3300029992	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3	Environmental
3300030007	I_Palsa_E1 coassembly	Environmental
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental
3300030399	II_Palsa_E2 coassembly	Environmental
3300030508	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental
3300033890	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M	Environmental
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_101303022	3300003368	Bog Forest Soil	TTGNYDAFRDEGLSPEAAIAETLDCYPEAGIEAIKSILNYRAEHQFQAQH*
Ga0062385_104628031	3300004080	Bog Forest Soil	PLLKNTRLPVEAVTGNYDACRDEGLSHQAAIAETLDCYPEAGPDAIQSILNYRAEHQLQAQQP*
Ga0062386_1004380792	3300004152	Bog Forest Soil	VVPGKVSGAPLLKHTRLPVDAITGNYGAFLDEGLSPDAAIAETLDCYTEAGIDAIKAILQYRAEHQFQAQS*
Ga0070733_110088361	3300005541	Surface Soil	LKNTRLPVEAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDAIRAILTYRAEHQLQAHS
Ga0066661_104294542	3300005554	Soil	VDTITGNYDVFRDKGLSPGAAIAKTLDCYPEAGIHATRAILDYRAAHQFQEHP*
Ga0070764_111160272	3300005712	Soil	KNTRLPVEAITGNYDAFRDEGLSPEAAIAETLDCYPEVGLNTIKAILNYRAAHQFQAQP*
Ga0066789_104604492	3300005994	Soil	SGAPLLKNTRLPVDAITGNYDAFRDEGLSHDQAIVETLDCYPEAGLHAIKTILSYRADHQFQAQL*
Ga0075023_1001029122	3300006041	Watersheds	VSGVPLLKNTRLPVDAITGNYDAFRDEGLSSDAAIAETLDCYPEAGIDTIKTILSYRAEHLVQDRQP*
Ga0075023_1002135653	3300006041	Watersheds	DAITGNYDAFRDEGLSHDEAIAETLDCYPEAGLETIKAILAYRAAHQFQAQP*
Ga0075028_1002692953	3300006050	Watersheds	RLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDAIKAILDYRAAHQFQAQP*
Ga0075030_1008191461	3300006162	Watersheds	NYDAFRDEGLSPEAAAAETLDCYPEAGLDNIKAILNYRAERQFQAQL*
Ga0070765_1011334692	3300006176	Soil	TGNYDAFRDEGLSPDEAMAETLDCYPEVGLDAIKAILNYRAEHQFRAQL*
Ga0114966_101219402	3300009161	Freshwater Lake	LPVEAITGNYDAFLDDGLSPHLAVAETLECYPQAGMNAILEILRYRETHHLQAQH*
Ga0105242_114801811	3300009176	Miscanthus Rhizosphere	TRLPVDAITGNYDAFRNEGLSPDEAIAETLDCYPEAGLDTIKAILSYRAAHQLQAHL*
Ga0116225_13203931	3300009524	Peatlands Soil	SGAPRLKNTRLPVEALIGNYDAFRDEGLSPDDAIAETLDCYPEAGVDAIKAILRYRAEHQLQAQP*
Ga0116215_14913881	3300009672	Peatlands Soil	GNYDAFRAEGLSPEAAIAETLDCYSEAGLDAIKAILNYRAEHQFQAQR*
Ga0116227_103841481	3300009709	Host-Associated	KNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGIEAIQAILNYREAHHVQAQP*
Ga0116219_100772121	3300009824	Peatlands Soil	NTRLPVEAITENYDAFREEGLSPDEAIAETLDCYPEAGLDAIKAILSYRAAHQFQAQL*
Ga0126373_132168761	3300010048	Tropical Forest Soil	DSFVDIEGLSPDAALAETLDCYPEAGLENIKTLLRYRAQHQPLARH*
Ga0136449_100000514115	3300010379	Peatlands Soil	VEALIGNYDAFRDEGLSPDDAIAETLDCYPEAGVDAIKAILRYRAEHQLQAQP*
Ga0136449_1001108606	3300010379	Peatlands Soil	DAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDAIKAILSYRAAHQLQAQP*
Ga0137404_122467462	3300012929	Vadose Zone Soil	VEAITGNYDAFRADGLSPESAIAETLDCYPEISIEAIKALIDYRATHQFQAQL*
Ga0181518_101593891	3300014156	Bog	AITGNYDAFRDEGLSPDEAIAETLDCYPEAGLDNIRAILSYRAAHQLQAPR*
Ga0181531_102775702	3300014169	Bog	VSGAPLLKNHRLPIDAITGNYDAFREEGLSPEAAIAETLDCYPEAGIENIKAILDFRAEHQFQAQH*
Ga0181537_100772731	3300014201	Bog	VSGAPLLKNHRLPVDAITGNYDAFREEGLSPEAAIAETLDCYPEAGIENIKAILDFRAEHQFQAQH*
Ga0181537_107743931	3300014201	Bog	NYDAFPDQGLSPDAAIAETLDCYPEAGLDAIRAILDYRAAHQLQAQP*
Ga0181537_109049631	3300014201	Bog	PLLKNTRLPVDAITGNYDAFRDEGMSPDEAIAETLDCYPEAGLEAIKAILNYRAEHRYQAQL*
Ga0182018_100507772	3300014489	Palsa	VSGAPLLKNTRSSVDAITGNYDAFRDEGLSHDEAIAETLDCYPEAGVDAIKTILNYRAVHQFQAQL*
Ga0182014_101973731	3300014491	Bog	ITGNYDAFREEGLPADAAIAETLDCYPEAGLDTIKAILAWRAAHQFQAQL*
Ga0182016_104721471	3300014493	Bog	RLPVEAITGNYDAFRDEGLSGDAAIAETLDCYPEAGVDAIRVILKYRDEHQHQAQL*
Ga0182024_118845993	3300014501	Permafrost	LPVEAIIGNYDAFRDEGLSPDDAIAETLDCYPEAGIDAIRAILRYRTGHQLQAQP*
Ga0182021_123134051	3300014502	Fen	NTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGRDAIEAILNYRAEHQFQVQP*
Ga0181525_103695891	3300014654	Bog	LPVDAITGNYDAFRDEGLSPEDAIAETLDCYPEAGIEVIEANLNYRDRHQLQEQL*
Ga0181516_104340741	3300014655	Bog	TRLPVDAITGNYDAFRDEGLSPEDAIAETLDCYPEAGIEVIEANLNYRDRHQLQEQL*
Ga0181519_110739881	3300014658	Bog	PLLKNTRLPVEAITENYDAFREGGLTAEEAIAETLDCYPQAGIEAIKAILNYRAEHRLQAQL*
Ga0157376_122207221	3300014969	Miscanthus Rhizosphere	NYDAFRDEGLSPDEAIAETLDCYPEAGLDTIKAILSYRAAHQLQAQL*
Ga0187853_104061331	3300017940	Peatland	TRLPVDAITVNYDAFRDEGLSPDAAIAETLDCYPEAGRDAIEAILNYRAEHQFQVQH
Ga0187879_107427332	3300017946	Peatland	LKNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGFDAIKAILSYRAAHQLQAQL
Ga0181520_102866124	3300017988	Bog	AITGNHDAFREEGLSPDAAIAETLDCYPEAGLDAIKASLNYRATHQFQAQP
Ga0187891_12307451	3300017996	Peatland	SGAPLLKNTRLPVDAITGNYDAFRDEGLSKEAAIAETLDCYPEAGIDAIKAIVDYRAKHQLQAQF
Ga0187887_100931055	3300018043	Peatland	TGNYDAFREEGLSPEEAIVETLDCYPEAGRDAVEAILNYRAEHELQVQF
Ga0187851_101891553	3300018046	Peatland	LKNTRLPVDAITGNYDAFRAEGLSPDAAIAETLDCYPEAGLDAIKAILNYRAAHQFQEQV
Ga0187851_104374742	3300018046	Peatland	VDAITGNYDAFRDEGLSPDAAIAETLDCYSEAGFDAIKAILSYRAAHQLQAQL
Ga0181508_12584041	3300019256	Peatland	TRLPVEAITENYDAFREGGLTAEEAIAETLDCYPQAGIEAIKAILNYRAEHRLQAQL
Ga0181506_11393153	3300019260	Peatland	LLQSTRLPVDAITGNYDAFRDEGLSPEDAIAETLDCYPEAGIEVIEANLNYRDRHQLQEQ
Ga0182031_12205993	3300019787	Bog	LLKNTRLPVEAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLEVIKAILNYREEHRFQAQ
Ga0210401_113947421	3300020583	Soil	PLLKNTRLPVDAITRNYDAFRDEGLLPDAALAETLDCYPEAGLDTLKAILSYRAAHQFQAQH
Ga0210389_103420501	3300021404	Soil	PLLKSTRLPVEAITGNYDAFRDEGMSPEAAIAETLDCYPEAGIDTIKAILCYRAEHQFQAQL
Ga0210383_115408012	3300021407	Soil	NYDAFRDEGLSPDAAIAETLDCYQEVGLDAIKAILNYRAEHQFQAEL
Ga0210383_115466812	3300021407	Soil	VPLLKNTRLPVEALTGNYDAFRAEGLSPDDAIAETLDCYPEAGIDALKAILRYRAEHQLQAQH
Ga0210394_111754261	3300021420	Soil	GAPLLKNTRLPVEAITGNYDAFRDEGLSPDAAIAETLDCYPEAGVDAIKAILRYRAEHQLQAQH
Ga0210384_106079603	3300021432	Soil	LKNTRLPVDAITGNYDAFRDEGLSPEEAIAETLDCYPEAGLDTIKAILSYRAAHQFQAQL
Ga0210410_116370652	3300021479	Soil	SGAPLLKNTRLPVDAITGNYDAFRDEGLSPDEAIAETLDCYPEAGLDTIKAILSYRAAHQFQAQL
Ga0210409_110944661	3300021559	Soil	PLRKNTRLPVDAITGNYDAFRDEGLSPDEAIAETLDCYPEAGLDTIKAILSYRAAHQFQAQL
Ga0226658_102899972	3300022222	Freshwater Microbial Mat	NYDAFRDEGLSRDAAIAETLDCYPEAGIDAIKAILHYRAAHQFQAQR
Ga0212090_107798491	3300022561	Glacier Valley	LLKNTRLPVDAITSNYDAFRGEGSSPEAAVAETLDCYPETGVDNIRAILSYRAAHTYQAQ
Ga0208692_10891892	3300025472	Peatland	SGAPLLKNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGRDAIEAILNYRAEHQFQVQH
Ga0208691_10257903	3300025612	Peatland	VSGAPLLKNTRLPVDAITGNYDAFREEGLSPEAAIAETLDCYPEAGIENIKAILDYRAEHQFQARH
Ga0207694_109979821	3300025924	Corn Rhizosphere	TGNYDAFRDEGLSPDEAIAETLDCYPEAGLDAIKAILSYRDARRGPVRLRR
Ga0209908_102064222	3300027745	Thawing Permafrost	PLLKNTRSSVDAITGNYDAFRDEGLSHDEAIAETLDCYPEAGVDAIKTILNYRAVHQFQAQL
Ga0209086_104176431	3300027770	Freshwater Lake	SGVPLLRNTRLPVEAITGNYDAFLDDGLSPHLAVAETLECYPQAGMNAILEILRYRETHHLQAQH
Ga0209656_100443772	3300027812	Bog Forest Soil	VVPGKVSGAPLLKHTRLPVDAITGNYGAFLDEGLSPDAAIAETLDCYTEAGIDAIKAILQYRAEHQFQAQS
Ga0209415_105095462	3300027905	Peatlands Soil	VEALIGNYDAFRDEGLSPDDAIAETLDCYPEAGVDAIKAILRYRAEHQLQAQP
Ga0302267_102565742	3300028745	Bog	KNTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAFV
Ga0302156_102510492	3300028748	Bog	LRKNTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAF
Ga0302202_101720831	3300028762	Bog	VEAITGLYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAFV
Ga0302202_103636651	3300028762	Bog	GKVSGVPLLKNTRLPVDAITGNYDAFLDEGLSPDAAMTETLDCYPEAGLDAIKAILNYRSEHQFQAQL
Ga0302198_104243301	3300028765	Bog	VSGVPLLKNTRLPIEAITGNYDAFRDEGLSPDAAVAETLDCYPEAGLDAIKAILNYRDEHQLQAQL
Ga0302201_100506483	3300028785	Bog	ILRKDTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAARSQVAFV
Ga0302189_100824341	3300028788	Bog	DAITGNYDAFRDEGLSPDAAIEETLDCYPEAGLDAIKAILNYRAKHQFQAQL
Ga0302189_101577121	3300028788	Bog	AITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAARSQVAFV
Ga0302189_103929671	3300028788	Bog	IEAITGNYDAFRDEGLSPDAAVAETLDCYPEAGLDAIKAILNYRDEHQLQAQL
Ga0302222_102150613	3300028798	Palsa	LPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDTIKAILNYRAEHQFQAQP
Ga0265338_112128281	3300028800	Rhizosphere	PGKVGGAPLLKNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYHEAGIDAIKAILNYRAKHQFQAQP
Ga0302265_12281792	3300028859	Bog	KVSGVPLLKNTRLPVEAITGNYDAFRDEGLSPDAAIAETLDCYPHADLDAIKAILKYRDEHQLKTQL
Ga0302199_11625932	3300028860	Bog	AITGNYDAFRDEGLSPDAAIEETLDCYPEAGLDAIKAILNYRAKHQFQAQL
Ga0302155_104988811	3300028874	Bog	SGVPLLKNTRLPVDAITGNYDAFRDEGLSPEAAIAETLDCYPEAGREAIRAILQYRAEYQLQAHS
Ga0302200_101684021	3300028909	Bog	TGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAFV
Ga0311327_105152341	3300029883	Bog	VEAITGNYDAFREEGLSQDAALAETLDCYPEAGLDTIRAILSYRAAHQFQTQP
Ga0311329_110051952	3300029907	Bog	IGNYDAFRDEGLSPDAAIAETLDCYPEAGVDNIKAILHYRDKHQLQAQL
Ga0311369_106087352	3300029910	Palsa	VSGAPLLKNTRSSVDAITGNYDAFRDEGLSHDEAIAETLDCYPEAGVDAIKTILNYRAVHQFQAQL
Ga0311361_114952842	3300029911	Bog	VSGAPLLKNTRLPVDAITGNYDAFRKEGLSPDAAIAETLDCYPEAGIEAIKSILNYREAHYFQAQP
Ga0311326_105063571	3300029917	Bog	RLPVEVITGNYDAFRDEGLSPDAAIAETLDCYPHADLDAIKAILKYRDEHQLKTQL
Ga0311363_110319752	3300029922	Fen	AITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAFV
Ga0311330_104223601	3300029945	Bog	VSDAILRKDTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAARSQVAFV
Ga0311331_114200141	3300029954	Bog	LPVAAITGNFDAFREEGLSIEEAIAETLDCYPGAGIDAIKAILHYRDQHQLQAHR
Ga0311342_100733411	3300029955	Bog	VDAITGNYDAFRDEGLSPDAAIEETLDCYPEAGLDAIKAILNYRAKHQFQAQL
Ga0302276_100726253	3300029992	Bog	TRLPVEVITGNYDAFRDEGLSPDAAIAETLDCYPHADLDAIKAILKYRDEHQLKTQL
Ga0311338_114484201	3300030007	Palsa	TRLPVDAITGNYDAFRDEGLSPDAAIAETLECYPEAGLDTIKAILNYRAEHQFQAQP
Ga0302274_102858051	3300030041	Bog	KNTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAARSQVAFV
Ga0302281_103800521	3300030044	Fen	NTRLPVEAITGNYDVFRDEGLPPGSAIAETLDCYPEAGLETIIAILDYRAAHRVQAQP
Ga0302282_10194381	3300030045	Fen	AILRKNTRLPVEAITGRYDAFRDDGLSVDDAIAETLDCYPEAGLEAIKSVLKFRAERSQVAFV
Ga0302176_101670941	3300030057	Palsa	KNTRLPVDAITGNYDAFLDEGLSPDAAIAETLDCYPEAGIDAIKAILDYRADEFQAHP
Ga0302179_101213593	3300030058	Palsa	TGNYDAFRDEGLSPDAAIAETLDCYPEAGLDTIKAILNYRAEHQFQAQP
Ga0311353_111553441	3300030399	Palsa	LLKNTRLPVDAITGNYDAFRDEGLSRDEALTETLDCYPEAGLDAIREILNYRAAHQFQAQ
Ga0302185_101500641	3300030508	Bog	LKNTRLPVEAITGNYGAFRDEGLSPDAAIAETLDCYPEAGLEVIKAILNYREEHRFQAQL
Ga0311357_103092451	3300030524	Palsa	KVSGAPLLKNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDTIKAILNYRAEHQFQAQP
Ga0265753_11319682	3300030862	Soil	LLKNTRLPVEAITGNYDAFRDEGLSHEAAIAETLDCYPEAGLDAIKAVLDYRAQHQLQAQ
Ga0265770_11449211	3300030878	Soil	AITGNYDAFRDEGLSHEAALAETLDCHPEAGLDAIKAILNYRAEHQLQAQR
Ga0302324_1011855051	3300031236	Palsa	NYDALLDEGLSPDDAKAETLDCYPEAGLDNIKTILSYRVARQFQAQL
Ga0302187_101919001	3300031259	Bog	PLLKNTRLPVEAITGNYDAFVAEGLSQAEAIAETLDCYPEAGIEAIKAILSYRAAHELQAQL
Ga0307509_105231722	3300031507	Ectomycorrhiza	MTGNYDAFVDEGLSPDAAIAETLDCYPDAGLAAIEAILSYRAAHEFQAQH
Ga0302326_103123981	3300031525	Palsa	NTRLPIEAITGNYDAFLDSGLSQEDAVAETLECYPQAGMDAISLILRYRAELLR
Ga0302326_103491405	3300031525	Palsa	GNYDAFRDEGLSPDAAIAETLDCYPEAGLDNIKAILDYRAEHQFQAQP
Ga0302326_103731071	3300031525	Palsa	LKNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDTIKAILNYRAEHRAS
Ga0302326_115209081	3300031525	Palsa	VFKNTRLPVAAITGNYDAFCDEGLSPDAAIAETLDCYPEAGIDVIKAILRYRAEHQLQAQ
Ga0310686_1069769453	3300031708	Soil	APLLKNTRLPVEAITGNYDAFRDEGLSPEAAIAETLDCYPEVGLNTIKAILNYRAAHQFQAQP
Ga0310686_1151390571	3300031708	Soil	GNYDAFRDEGLSPEAAIAETLDCYPEAGLDAIRAILSYRAAHQLQAQL
Ga0310686_1156117142	3300031708	Soil	LPVEAVTGNYDAFRAEGLSSDEAIAETLDCYPEAGIDAIKAILRYRAEHQLQAQP
Ga0310686_1191109831	3300031708	Soil	AITGNYDAFRDEGLSRDAAIAETLDCYPEAGLDAVKAILNYRDEHLLQAQL
Ga0302319_106819774	3300031788	Bog	KVSGALLLKNTRLPVEAITGNYDAFRDEGLSPDAALAETLDCYPEAGLDAIKAILNCRGTHQFQAQP
Ga0307478_112315022	3300031823	Hardwood Forest Soil	GNYDTFRAEGLSSDDAIAETLDCYPEAGIDAIKAILRYRAEHQLQAQH
Ga0311301_101781195	3300032160	Peatlands Soil	DAITGNYDAFRDEGLSPDAAIAETLDCYPEAGLDAIKAILSYRAAHQLQAQP
Ga0335078_106646693	3300032805	Soil	APLLKNTRLPVEAITGNYDAFRAEGLSPDAAIAETLDCYPETSVEAIKALLDYRRAHQFQARP
Ga0335077_116602343	3300033158	Soil	TRLPVEAITGNYDAFRDEGLSHDEAIAETLNCYPEAGLDAIKAILDYRAAHEFQAQP
Ga0334810_087060_573_752	3300033890	Soil	KNTRLPVDAITGNYDAFRDEGLSPDAAIAETLDCYPEAGRDAIEAILNYRAEHQFQVQP
Ga0370515_0433661_1_159	3300034163	Untreated Peat Soil	EAITGNYDAFREEGLSPEAALAETLDCYPEAGIDAIRAILEYRAAHQFQAQP