NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F077470

Metagenome / Metatranscriptome Family F077470

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077470
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 129 residues
Representative Sequence MQSIRPFRELALGLVLLLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRHGRLEVEGYVNNRSPYRVGNLRVLVDSLDDAGRIVDQRVSWVLGELGGDSRLYFDVPVTPAAHYRVSVFSYDRVDEAGIMLP
Number of Associated Samples 98
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 70.94 %
% of genes near scaffold ends (potentially truncated) 36.75 %
% of genes from short scaffolds (< 2000 bps) 84.62 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.726 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(17.094 % of family members)
Environment Ontology (ENVO) Unclassified
(35.897 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.573 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 10.69%    β-sheet: 37.11%    Coil/Unstructured: 52.20%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF07883Cupin_2 8.55
PF00199Catalase 5.13
PF04909Amidohydro_2 5.13
PF00201UDPGT 2.56
PF01258zf-dskA_traR 2.56
PF11066DUF2867 1.71
PF00118Cpn60_TCP1 1.71
PF05685Uma2 0.85
PF03807F420_oxidored 0.85
PF06472ABC_membrane_2 0.85
PF04366Ysc84 0.85
PF00210Ferritin 0.85
PF01053Cys_Met_Meta_PP 0.85
PF02321OEP 0.85
PF03992ABM 0.85
PF00378ECH_1 0.85
PF09335SNARE_assoc 0.85
PF00643zf-B_box 0.85
PF07992Pyr_redox_2 0.85
PF02633Creatininase 0.85
PF00232Glyco_hydro_1 0.85
PF02852Pyr_redox_dim 0.85
PF00496SBP_bac_5 0.85
PF00196GerE 0.85
PF00120Gln-synt_C 0.85
PF00072Response_reg 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG0753CatalaseInorganic ion transport and metabolism [P] 5.13
COG1819UDP:flavonoid glycosyltransferase YjiC, YdhE familyCarbohydrate transport and metabolism [G] 5.13
COG1734RNA polymerase-binding transcription factor DksATranscription [K] 2.56
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 1.71
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.71
COG1402Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)Coenzyme transport and metabolism [H] 0.85
COG4636Endonuclease, Uma2 family (restriction endonuclease fold)General function prediction only [R] 0.85
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 0.85
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.85
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.85
COG2723Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidaseCarbohydrate transport and metabolism [G] 0.85
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.85
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.85
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.85
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.85
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 0.85
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.85
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 0.85
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.85
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.85
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.85
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 0.85
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.85


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.73 %
UnclassifiedrootN/A4.27 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c2231319Not Available565Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101276711Not Available766Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101409207All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium751Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101443733All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1314Open in IMG/M
3300000550|F24TB_11066515All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1145Open in IMG/M
3300000559|F14TC_101035454All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1125Open in IMG/M
3300000891|JGI10214J12806_11750173All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1218Open in IMG/M
3300000955|JGI1027J12803_106480417All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1368Open in IMG/M
3300001139|JGI10220J13317_11263711All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium917Open in IMG/M
3300001431|F14TB_100575723All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300004156|Ga0062589_100181902All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1491Open in IMG/M
3300004157|Ga0062590_100193284All Organisms → cellular organisms → Bacteria1460Open in IMG/M
3300004157|Ga0062590_101357642All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium704Open in IMG/M
3300004463|Ga0063356_101220714All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1094Open in IMG/M
3300004480|Ga0062592_100833531All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium822Open in IMG/M
3300005330|Ga0070690_101529901All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium539Open in IMG/M
3300005332|Ga0066388_102606179All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium921Open in IMG/M
3300005353|Ga0070669_100123348All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1980Open in IMG/M
3300005353|Ga0070669_100570372All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium945Open in IMG/M
3300005356|Ga0070674_101371506All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium632Open in IMG/M
3300005365|Ga0070688_100503314All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium914Open in IMG/M
3300005441|Ga0070700_101403415All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300005444|Ga0070694_100275912All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1280Open in IMG/M
3300005457|Ga0070662_100053794All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2915Open in IMG/M
3300005543|Ga0070672_100188723All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1720Open in IMG/M
3300005713|Ga0066905_101127137All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium698Open in IMG/M
3300005718|Ga0068866_10172723All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1270Open in IMG/M
3300005764|Ga0066903_105724201All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium653Open in IMG/M
3300006049|Ga0075417_10017362All Organisms → cellular organisms → Bacteria2815Open in IMG/M
3300006049|Ga0075417_10160374All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1051Open in IMG/M
3300006196|Ga0075422_10160134All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium905Open in IMG/M
3300006604|Ga0074060_11679287All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium870Open in IMG/M
3300006844|Ga0075428_100064740All Organisms → cellular organisms → Bacteria4004Open in IMG/M
3300006845|Ga0075421_100011264All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae11072Open in IMG/M
3300006846|Ga0075430_100547780All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium954Open in IMG/M
3300006852|Ga0075433_10393376All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1223Open in IMG/M
3300006853|Ga0075420_100447244All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1116Open in IMG/M
3300006854|Ga0075425_101463774All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium772Open in IMG/M
3300006904|Ga0075424_102859024All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium502Open in IMG/M
3300007004|Ga0079218_10090895All Organisms → cellular organisms → Bacteria2063Open in IMG/M
3300009094|Ga0111539_10283147All Organisms → cellular organisms → Bacteria1929Open in IMG/M
3300009100|Ga0075418_10032412All Organisms → cellular organisms → Bacteria → Proteobacteria5680Open in IMG/M
3300009100|Ga0075418_10053993All Organisms → cellular organisms → Bacteria → Proteobacteria4303Open in IMG/M
3300009147|Ga0114129_10293898All Organisms → cellular organisms → Bacteria → Proteobacteria2167Open in IMG/M
3300009148|Ga0105243_11136927All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium791Open in IMG/M
3300009156|Ga0111538_10278474All Organisms → cellular organisms → Bacteria2117Open in IMG/M
3300009156|Ga0111538_13883896All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300009176|Ga0105242_11679066All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium671Open in IMG/M
3300009177|Ga0105248_12475212All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium591Open in IMG/M
3300009553|Ga0105249_10479162All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1287Open in IMG/M
3300009553|Ga0105249_10731463All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1051Open in IMG/M
3300010360|Ga0126372_12421979All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium575Open in IMG/M
3300010399|Ga0134127_10100917All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2528Open in IMG/M
3300010400|Ga0134122_10552058All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1054Open in IMG/M
3300010403|Ga0134123_10533237All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1113Open in IMG/M
3300012204|Ga0137374_10585168All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium853Open in IMG/M
3300012355|Ga0137369_10216485All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1470Open in IMG/M
3300012362|Ga0137361_10981083All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium764Open in IMG/M
3300012685|Ga0137397_10463816All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium944Open in IMG/M
3300012922|Ga0137394_10009534All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria7571Open in IMG/M
3300012922|Ga0137394_10189315All Organisms → cellular organisms → Bacteria1756Open in IMG/M
3300012922|Ga0137394_11183875All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium628Open in IMG/M
3300013297|Ga0157378_11505388All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium717Open in IMG/M
3300015372|Ga0132256_100488777All Organisms → cellular organisms → Bacteria1341Open in IMG/M
3300015373|Ga0132257_103230171All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium593Open in IMG/M
3300015374|Ga0132255_100556626All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1691Open in IMG/M
3300015374|Ga0132255_101880007Not Available910Open in IMG/M
3300017792|Ga0163161_10152192All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1759Open in IMG/M
3300017792|Ga0163161_10759296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria812Open in IMG/M
3300018056|Ga0184623_10251057All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium807Open in IMG/M
3300018075|Ga0184632_10158369All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium999Open in IMG/M
3300020004|Ga0193755_1015429All Organisms → cellular organisms → Bacteria2518Open in IMG/M
3300021080|Ga0210382_10251091All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium774Open in IMG/M
3300025912|Ga0207707_10575130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium955Open in IMG/M
3300025917|Ga0207660_10099573All Organisms → cellular organisms → Bacteria2169Open in IMG/M
3300025923|Ga0207681_10143236All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1782Open in IMG/M
3300025933|Ga0207706_10060714All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium3329Open in IMG/M
3300025934|Ga0207686_11130004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium639Open in IMG/M
3300025941|Ga0207711_11649048All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium585Open in IMG/M
3300025961|Ga0207712_10419175All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1129Open in IMG/M
3300027873|Ga0209814_10017355All Organisms → cellular organisms → Bacteria2891Open in IMG/M
3300027873|Ga0209814_10182958All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium903Open in IMG/M
3300027886|Ga0209486_10047047All Organisms → cellular organisms → Bacteria2146Open in IMG/M
3300027907|Ga0207428_10270278All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1264Open in IMG/M
3300027909|Ga0209382_10177611All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS1912452Open in IMG/M
3300028381|Ga0268264_10840967All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium919Open in IMG/M
3300028592|Ga0247822_10985907All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium695Open in IMG/M
3300028809|Ga0247824_10063833All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1908Open in IMG/M
3300028809|Ga0247824_10362187All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium830Open in IMG/M
3300028878|Ga0307278_10104239All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1275Open in IMG/M
3300028889|Ga0247827_10263387All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium987Open in IMG/M
3300030336|Ga0247826_10494129All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium923Open in IMG/M
3300031538|Ga0310888_11109714Not Available500Open in IMG/M
3300031562|Ga0310886_10082616All Organisms → cellular organisms → Bacteria1555Open in IMG/M
3300031720|Ga0307469_10130119All Organisms → cellular organisms → Bacteria1841Open in IMG/M
3300031740|Ga0307468_100001406All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6887Open in IMG/M
3300031740|Ga0307468_100990037All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium739Open in IMG/M
3300031820|Ga0307473_11275810All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium549Open in IMG/M
3300031847|Ga0310907_10362882All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria746Open in IMG/M
3300031858|Ga0310892_10752077All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium672Open in IMG/M
3300031940|Ga0310901_10453295All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium567Open in IMG/M
3300031943|Ga0310885_10103141All Organisms → cellular organisms → Bacteria → Proteobacteria1298Open in IMG/M
3300032012|Ga0310902_10730316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria669Open in IMG/M
3300032180|Ga0307471_100561280All Organisms → cellular organisms → Bacteria1297Open in IMG/M
3300032180|Ga0307471_100765340All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1132Open in IMG/M
3300032180|Ga0307471_103503832Not Available555Open in IMG/M
3300032205|Ga0307472_101509712All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria656Open in IMG/M
3300032211|Ga0310896_10068921All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1492Open in IMG/M
3300032211|Ga0310896_10249707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria897Open in IMG/M
3300032828|Ga0335080_10243192All Organisms → cellular organisms → Bacteria1968Open in IMG/M
3300033004|Ga0335084_10327618All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1581Open in IMG/M
3300033550|Ga0247829_10170321All Organisms → cellular organisms → Bacteria1711Open in IMG/M
3300033551|Ga0247830_10735125All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium784Open in IMG/M
3300033551|Ga0247830_10837267All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium732Open in IMG/M
3300034662|Ga0314783_177581All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium508Open in IMG/M
3300034666|Ga0314788_162297All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium553Open in IMG/M
3300034817|Ga0373948_0209669All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium511Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere17.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil16.24%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.84%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.42%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.56%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.56%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.56%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.56%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.56%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.56%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.71%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.71%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.71%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.71%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.71%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.71%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.71%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.85%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.85%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034666Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_223131913300000033SoilMAAAAPKADVGASEGWRSAETMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVAGYVINRSPYRIDRVRVLVDSLNDANRVVDQKVAWVPGELPGDSRLYFSVA
INPhiseqgaiiFebDRAFT_10127671123300000364SoilMPPIRPVRALTLGLVLLLAVPVVAAAXXLQPLXXGWEQHFSVTWDTIQRQGRAEVEGYVINRSPYRVGRVRVLVDSLDDGGRMVDQKVSWVAGELPGDSRLYFDVPVTPAAQYRVRLFSYDRIEEARIMSP*
INPhiseqgaiiFebDRAFT_10140920713300000364SoilARELQPLMNGWEQHFSVVWDTVQRRGVGEVEGYVINKSPYRVTRVRVLVDSLDDAERIVDQKVSWVSGELPGDSRLYFEVPVAPAARYRVRLFSYDRLEEAKIMSP*
INPhiseqgaiiFebDRAFT_10144373323300000364SoilMAHIRRFRELSLGLVLLVGALLGAVLGAPGAVTAAELQPLVNGWEHHFSVTWDTTQRQGRVGVDGYVINKSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
F24TB_1106651513300000550SoilMTSIRPVRALTLGLVLLAAIPGAAAASELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDSLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
F14TC_10103545433300000559SoilMPPIRSLRAWTLGLAIFLAVPSLAAAQEMQPLMQGWEQHFSVTWDKVERRGRTEVEGYVINKSPYRVGRVRVLVDSLDDANRIVDQKVGWVPGELPGDSRLYFSVVAPPAAQYRARVFDYGRLESAQIMSP*
JGI10214J12806_1175017333300000891SoilPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP*
JGI1027J12803_10648041713300000955SoilRELQPLMNGWEQHFSVVWDTVQRRGVGEVEGYVINKSPYRVTRVRVLVDSLDDAERIVDQKVSWVSGELPGDSRLYFEVPVAPAARYRVRLFSYDRLEEAKIMSP*
JGI10220J13317_1126371123300001139SoilFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP*
F14TB_10057572323300001431SoilMTSIRPIRALTLGLVLLAAIPGAAAARELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDSLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
Ga0062589_10018190223300004156SoilMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP*
Ga0062590_10019328423300004157SoilMLHWRSVREVAVGLLLLLAAPGAASAQEIQPLMQGWEDHFSVTWDAAQRRGRTEVEGYVNNKSPYRVGRVRVLVDSLDNANRVVDQKIAWVSGESAGGDRLYFSVPVTPAAQYRVRVFSYDRIEFAQIMSP*
Ga0062590_10135764223300004157SoilMPSLRTFRALALGAGLLLTTPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGTGKIVDQRVSWVLGELGGDSRLYFDVPVTPADHYRVRVFSYDRIDEASMLVP*
Ga0063356_10122071423300004463Arabidopsis Thaliana RhizosphereMHAIRPLRELALGLGLLLLTPGVAPARELQPLMRGWEQHFSVTWDTVQRRGRLEVEGYVNNRSPYRVGNLRVLVDSLDDSGRIVDQRVSWVLGELGGDSRLYFEVPVAPAARYRVSVFSYDRVSEASLSFP*
Ga0062592_10083353113300004480SoilMPSLRTFRALALGAGLLLATPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGTGKIVDQRVSWVLGELGGDSRLYFDVPVTPGDHYRVRVFSYDRIDEASMLVP*
Ga0070690_10152990113300005330Switchgrass RhizosphereASPARPSNESRRQCIERRGGQIRIMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVIKRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0066388_10260617913300005332Tropical Forest SoilMRHLRAVRTLVLGLLLLVVAPGSAPAQELQPLSQGWEQYFSATWDTVQRRGRTEVEGYLMNQSSYRIGRVRVLVDSLDNANRVVDQKVAWVAGESAGGDRLYFSVPVTPAAQYRVRVFSYDRIEYAQIMSP*
Ga0070669_10012334833300005353Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0070669_10057037213300005353Switchgrass RhizosphereMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGCEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEAS
Ga0070674_10137150613300005356Miscanthus RhizosphereMAYIRRFRELALGLVLLLGAPGAAPADELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINKSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0070688_10050331423300005365Switchgrass RhizosphereMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVAWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP*
Ga0070700_10140341513300005441Corn, Switchgrass And Miscanthus RhizosphereMPSLRTFRALALGAGLLLATPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGAGKIVDQRVSWVLGELGGDSRLYFDVPVTPADHYRVRVFSYDRIDEASMLTP*
Ga0070694_10027591213300005444Corn, Switchgrass And Miscanthus RhizospherePCIAGQPSRIATGEGETMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP*
Ga0070662_10005379433300005457Corn RhizosphereMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0070672_10018872323300005543Miscanthus RhizosphereMAYTRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0066905_10112713723300005713Tropical Forest SoilMRHVRSLRTLVLGLALLLAAPNAVPAQEMQPLTQGWEQYFSVTWDAVQRRGRTEVEGYLMNRSNYRVGRVRVLVDSLDNANKVVDQKVGWVAGESAGNDRLYFSVPVTPAAQYRVRVFSYDRIEYAQIMSP*
Ga0068866_1017272313300005718Miscanthus RhizosphereMAYARRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0066903_10572420113300005764Tropical Forest SoilMASSVRRLGALVVSLTLTLTTAGWALARDLEPLMHGWEQHLSITWSPVQQHGRSEIEGYIINRSPYRFGRLRVLVDSLDDGGRVVDQRVSWVNGDLPGDSRLYFEVPVKPAANYRV
Ga0075417_1001736223300006049Populus RhizosphereMRRRERGFLGLLHIAPLLLIAPAVVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP*
Ga0075417_1016037413300006049Populus RhizosphereMTSISSVRALTLGLVLLAAIPGAAAANELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDGLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
Ga0075422_1016013423300006196Populus RhizosphereETMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0074060_1167928713300006604SoilMAYTRRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAA
Ga0075428_10006474033300006844Populus RhizosphereMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQYRVRVFSYGRLESAQIMSP*
Ga0075421_10001126473300006845Populus RhizosphereMRRRERGFLGLLHIAPLLLMAPAVVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP*
Ga0075430_10054778023300006846Populus RhizosphereMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0075433_1039337613300006852Populus RhizospherePAAAHASEVWRLSETMTSISSVRALTLGLVLLAAIPGAAAAGELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDGLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
Ga0075420_10044724413300006853Populus RhizosphereADVGASEGWRSVETMLPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0075425_10146377423300006854Populus RhizosphereMASISSVRALTLGLVLLAAIPGAAAAGELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDSLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
Ga0075424_10285902413300006904Populus RhizosphereVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP*
Ga0079218_1009089523300007004Agricultural SoilMPPSTWLRALAFGLLVVAAAPTVVPAQALQPLMHGWNQHFTVTWETAQRRGRPQIAGYVNNRSPYRVGNLRVLVDSLDAAGLVVDQRVSWVLGELGGDSRLYFEVPVTSAASYRVSVFSYDRVDQSASVMAP*
Ga0111539_1028314733300009094Populus RhizosphereLTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0075418_1003241253300009100Populus RhizosphereLTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0075418_1005399333300009100Populus RhizosphereMAPAVVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP*
Ga0114129_1029389823300009147Populus RhizosphereMTSISSVRALTLGLVLLAAIPGAAAAGELQPLMRGWEQHLSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDGLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP*
Ga0105243_1113692713300009148Miscanthus RhizosphereMLHWRSVREVAVGLLLLLAAPGAASAQEIQPLMQGWEDHFSVTWDAAQRRGRTEVEGYVNNKSPYRVGRVRVLVDSLDNTNRVVDQKVAWVSGESAGGDRLYFSVPVTPAAQYRVRVFSYDRIEYAQIMSP*
Ga0111538_1027847433300009156Populus RhizosphereLTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQSRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP*
Ga0111538_1388389613300009156Populus RhizosphereTASPAVQHASQWWRVTEMPSLRMLRALTLGTGLLLATPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGTGKIVDQRVSWVLGELGGDSRLYFDVPVTPADHYRVRVFSYDRIDEASMLVP*
Ga0105242_1167906613300009176Miscanthus RhizosphereQCIEMRGGQIRTMAHIRRFRELSLGLGLLVGALLGAVLGAPGAVTAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINKSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0105248_1247521213300009177Switchgrass RhizosphereIRIMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0105249_1047916233300009553Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLIDSLDDAGRIVDQKISWVPDELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0105249_1073146313300009553Switchgrass RhizosphereMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPAD
Ga0126372_1242197913300010360Tropical Forest SoilMLHWRMFRGLGLGLALLMAAPAVVPAQEIRPLMQGWEQHFSVTWDSIQVRGRTEVEGYVINKSPYRVGRVRVLVDSLDNANRVVDQKVAWVPGESAGGDRLYFSVPVAAAAQYRVQVFSYDRIEYAQIMSP*
Ga0134127_1010091733300010399Terrestrial SoilLALGAGLLLATPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGAGKIVDQRVSWVLGELGGDSRLYFDVPVTPADHYRVRVFSYDRIDEASMLVP*
Ga0134122_1055205813300010400Terrestrial SoilMAHIRRFRELSLGLALLVGALLGAVLGAPGAVTAAELQPLVNGWEHHFSVTWDTTQRQGRVGVDGYVINKSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0134123_1053323723300010403Terrestrial SoilMLRALALGTGLLLATPAIAPARELQPLMWGWEQHFSVTWDTLQRRGKPRVEGYVNNNSPYRVGNLRVLVDSLDGTGKIVDQRVSWVLGELGGDSRLYFDVPVTPADHYRVRVFSYDRIDEASMLTP*
Ga0137374_1058516813300012204Vadose Zone SoilLLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRHSRLEVEGYVNNRSPYRVGNLRVLVDSLDDAGRIVDQRVSWVLGELGGDSRLYFDVPVTPAAHYRVSVFSYDRVDEAGIMLP*
Ga0137369_1021648523300012355Vadose Zone SoilMQSIRPFRELALGLVLLLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRHGRLEVEGYVNNRSPYRVGNLRVLVDSLDDAGRIVDQRVSWVLGELGGDSRLYFDVPVTPAAHYRVSVFSYDRVDEAGIMLP*
Ga0137361_1098108323300012362Vadose Zone SoilMRSTLPFRELGLGLALLLATPGAAPARELQPLTSGWEQHFSVTWDTIQRRGRLEVEGYVNNQSPYRVGNVRVLVDSLDDTGRTVDQHVSWVLGELGGGGRLYFEVPVTQAAHYKVRVFSYDRIDEAGVGLP*
Ga0137397_1046381613300012685Vadose Zone SoilMAYIRAFRELALGLALLLGAPSVVPARELQPLMNGWEQHFSVTWDTIQRQGRVEVEGYVINRSPYCVSRVRVLVDSLDDAGRIADQKVSWVPGELSGDSRLYFDVSVAPAAQYRVRLFSYDRIEEARIMSP*
Ga0137394_1000953493300012922Vadose Zone SoilMPSIRPFRELALGLVLLLVTPAVAPARELQPLMRGWEQHFSVTWDSIQRHGRLEVEGYVNNRSPYRVGNVRVLVDSLDDAGRIVDQRVSWALGELGGDSRVYFDVPVTPAAHYRVRVFSYDRVDEASLMLP*
Ga0137394_1018931523300012922Vadose Zone SoilMRFIRPFRELALGLVVLLAAPGVAPARELQPLMHGWEQHFSVAGDTIQRHGRQEVEGYVINRSPYRVGHLRVLVDSLDDTGRIVDQKVSWVLGELSGDSRLYFDVPVTSAANYRVSVFSYDRIDEANIMLP*
Ga0137394_1118387513300012922Vadose Zone SoilNGWRSVQTMAYIRAFRELALGLALLLGAPGVVPARELQPLMNGWEQHFSVTWDTIQRQGRVEVEGYVINRSPYRVSRVRVLVDSLDDAGRIADQKVSWVPGELSGDSRLYFDVSVAPAAQYRVRLFSYDRIEEARIMSP*
Ga0157378_1150538823300013297Miscanthus RhizosphereMAYARRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0132256_10048877723300015372Arabidopsis RhizosphereMARIGALRALAFGLVLLLAVPAAAPEAAPARELQPLMNGWEQHLSVTWDTIQRRDRVEVGGYVINRSPYRIGRLRVLVDSLDDAQRIVDQKVSWVAGELPGDSRLYFEVPVTPAAQYRVRVFSYDRIEEAKLMSP*
Ga0132257_10323017113300015373Arabidopsis RhizosphereGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0132255_10055662633300015374Arabidopsis RhizosphereMAYTRRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP*
Ga0132255_10188000723300015374Arabidopsis RhizosphereMARIGALRALAFGLVLLLVPTAAPAATPARELQPLMNGWEQHLSVTWDTIPRRDRVEVGGYVINRSPYRIGRLRVLVDSLDDAQRIVDQKVSWVAGELPGDSRLYFEVPVTPAAQYRVRVFSYDRIEEAKLMSP*
Ga0163161_1015219223300017792Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0163161_1075929623300017792Switchgrass RhizosphereMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSY
Ga0184623_1025105723300018056Groundwater SedimentMPSIRPFRELALGLVLLLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRHGRLEVEGYVNNRSPYRVGNVRVLVDSLDDAGRIVDQRVSWVLGELGGDSRIYFDVPVTPAAHYRVRIFSYDRVDEASLMLP
Ga0184632_1015836913300018075Groundwater SedimentQSIRPFRELALGLVLLLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRRGRLEVEGYVNNRSPYRVGNVRVLVDSLDDAGRIVDQWVSWVLGELGGGSRLYFDVPVTPAAHYRVSVFSYDRVDEAGIMLP
Ga0193755_101542933300020004SoilMRSTLPFRELGLGLALLLATPGVAPARELQPLSSGWEQHFSVTWDTIQRRGRLEVEGYVNNQSPYRVGNVRVLVDSLDDTGRTVDQRVSWVLGELGGGGRLYFEVPVTQAAHYTVRIFSYDRIDEAGVGLP
Ga0210382_1025109123300021080Groundwater SedimentMPSIRPFRELALGLVLLLAAPGVAPARELQPLMGGWEQHFSVTWDTIQRHGRLEVEGYVNNRSPYRVGNVRVLVDSLDDAGRIVDQRVSWVLGELGGDSRIYFDVPVTPAAHY
Ga0207707_1057513023300025912Corn RhizosphereMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRIDEASMLTP
Ga0207660_1009957323300025917Corn RhizosphereMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP
Ga0207681_1014323633300025923Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAPAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0207706_1006071433300025933Corn RhizosphereMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0207686_1113000413300025934Miscanthus RhizosphereIRTMAHIRRFRELSLGLGLLVGALLGAVLGAPGAVTAAELQPLVNGWEHHFSVTWDTTQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0207711_1164904813300025941Switchgrass RhizosphereIRIMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0207712_1041917533300025961Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFNVSVTPAAQYRVRVFSYDRIEEARVMSP
Ga0209814_1001735543300027873Populus RhizosphereMRRRERGFLGLLHIAPLLLIAPAVVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP
Ga0209814_1018295813300027873Populus RhizosphereGQAVVRHSDLFAPPAAAHASEVWRLSETMTSISSVRALTLGLVLLAAIPGAAAANELQPLMRGWEQHFSVTWDTAQRHGRLEVEGYVNNQSPYRVGNLRVLVDGLDDAGRVVDQRVSWVLGDIGGGSRVYFEVPVKPAPHYRVSVFSYDRIDEASLTFP
Ga0209486_1004704723300027886Agricultural SoilMPPSTWLRALAFGLLVVAAAPTVVPAQALQPLMHGWNQHFTVTWETAQRRGRPQIAGYVNNRSPYRVGNLRVLVDSLDAAGLVVDQRVSWVLGELGGDSRLYFEVPVTSAASYRVSVFSYDRVDQSASVMAP
Ga0207428_1027027823300027907Populus RhizosphereMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0209382_1017761133300027909Populus RhizosphereGFLGLLHIAPLLLMAPAVVAPAAAAPRELQPLIVGSERFFSLTWDAAQRHGRLEVEGYIGNNSPYRVGNLRLLVDSFDDAGRIIDQRLSWVIGNLSANDRLYFEVPVAPAYRYRVRVFYYDRIDEASFTIP
Ga0268264_1084096723300028381Switchgrass RhizosphereMAYIRRFRELALGLVLLLGAPGAAAAAELQPLVNGWEHHFSVTWDTVQRQGRVGVDGYVINRSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFDVSVTPAAQYRVRVFSYDRVDEASMKFP
Ga0247822_1098590713300028592SoilPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0247824_1006383333300028809SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0247824_1036218723300028809SoilMHAIRPLRELALGLGLLLLTPGVAPARELQPLMRGWEQHFSVTWDTVQRRGRLEVEGYVNNRSPYRVGNLRVLVDSLDDSGRIVDQRVSWVLGELGGDSRLYFEVPVAPAARYRVSVFSYDRVSEASLSFP
Ga0307278_1010423913300028878SoilMQSIRPFRELALGLVLFLAAPGVAPARELQPLMRGWEQHFSVTWDTIQRHGRLEVEGYVNNRSPYRVGNLRVLVDSLDDAGRIVDQRVSWVLGELGGDSRLYFDVPVTPAAHYRVSVFSYDRVDEAGMMLP
Ga0247827_1026338723300028889SoilVETMLPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0247826_1049412913300030336SoilPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0310888_1110971413300031538SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQY
Ga0310886_1008261623300031562SoilMLPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQYRVRVFSYGRLESAQIMSP
Ga0307469_1013011923300031720Hardwood Forest SoilMLHWRSFRGLAVGVLLLLAAPGVAPAQEMQPLMQGWEQHFSVTWDPIQRRGRTEVEGYVVNKSPYRVGRVRVLVDSLDNANRVVDQKVAWVPGESAGGDRLYFSVAVAPAAQYRVRVFSYDRIEYAQLMSP
Ga0307468_10000140653300031740Hardwood Forest SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0307468_10099003713300031740Hardwood Forest SoilMAHIRRFRELSLGLGLLVGALLGAVLGAPGAVTAAELQPLVNGWEHHFSVTWDTTQRQGRVGVDGYVINKSPYRVGRVRVLVDSLDDAGRIVDQKISWVPGELSGDSRLYFD
Ga0307473_1127581013300031820Hardwood Forest SoilQELQPLMQGWEQLFSVTWDQVQRGGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRIVDQKVGWVPGELPGGSRLYFSVVVPPAAQYRVRVFDYGRLESAQIMSP
Ga0310907_1036288213300031847SoilMLPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMSP
Ga0310892_1075207723300031858SoilMLHWRSVREVAVGLLLLLAAPGAASAQEIQPLMQGWEDHFSVTWDAAQRRGRTEVEGYVNNKSPYRVGRVRVLVDSLDNANRVVDQKIAWVSGESAGGDRLYFSVPVTPAAQYRVRVFSYDRIEFAQIMSP
Ga0310901_1045329513300031940SoilALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKF
Ga0310885_1010314123300031943SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQYRVRVFSYGRLESAQIMSP
Ga0310902_1073031623300032012SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLESAQIMS
Ga0307471_10056128023300032180Hardwood Forest SoilMPPIRPLRALTLGLVLLLAVLGIAAAQELQPLMHGWEQYFSVTWDTIQRRGRVEVEGYVINRSPYRIDRVRVLVDSLDDANRIVDQKVGWVPGELPGGSRLYFSVVVPPAAQYRVRVFDYGRLESAQIMSP
Ga0307471_10076534013300032180Hardwood Forest SoilMPSIRPFREFALGLVLLLAAPGVARARELQPLMHGWEQHFSVTWDTTQRHGRPEVEGYVINRSPYRVGRVRVLVDSLDAAGRSVDQKVSWVAGELSGDSRLYFDVPVSPAANYRVRVFDYDRLEEASIMFP
Ga0307471_10350383213300032180Hardwood Forest SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRLE
Ga0307472_10150971213300032205Hardwood Forest SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVERRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPPAAQYRVRVFSYGRL
Ga0310896_1006892143300032211SoilMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDGAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP
Ga0310896_1024970723300032211SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKVQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQYRVRVFSYGRLESAQIM
Ga0335080_1024319223300032828SoilMASSIRRLGALVLGVALALATPGLARARDLEPLMHGWEQHLSITWNPVQQHGRTEIEGYVINRSPYRFGRLRVLVDSLDDAGRIVDQRVSWVHGELPGDSRLYFEVPVKPASNYRVSVFSYDRLEEFSMMLP
Ga0335084_1032761823300033004SoilMASSIRRLGALVLSLTLALTTPGLARARELEPLMHGWEEHLSVTWNPVQQHGRPEIEGYIINRSPYRFGRLRILVDSLDDSGRIVDQRVSWVHGDLPGDSRLYFEVPVQPASSYRVSVFSYDRLEEFSLMLP
Ga0247829_1017032113300033550SoilMRPIRPLRALTLGLVLLLAVPGVAAAQELQPLMHGWEQHFSVTWDKAQRRGRTEVEGYVINRSPYRIDRVRVLVDSLDDANRVVDQKVAWVPGELPGDSRLYFSVAVPTAAQYRVRVFSYGRLESAQIMSP
Ga0247830_1073512523300033551SoilMHAIRPLRELALGLGLLLLTPSVAPARELQPLMRGWEQHFSVTWDTVQRRGRLEVEGYVNNRSPYRVGNLRVLVDSLDDSGRIVDQRVSWVLGELGGDSRLYFEVPVAPAARYRVSVFSY
Ga0247830_1083726723300033551SoilMHAIRPLRELALGLGLLLLTPGVAPARELQPLMRGWEQHFSVTWDTVQRRGRLEVEGYVNDRSPYRVGNLRVLVDSLDDSGRIVDQRVSCVLGELGAARYRVSVFSYDRVSEASLSFP
Ga0314783_177581_11_4063300034662SoilMLHWRSVREVAVGLLLLLAAPGAASAQEIQPLMQGWEDHFSVTWDAAQRRGRTEVEGYVNNKSPYRVGRVRVLVDSLDNANRVVDQKIAWVSGESAGGDRLYFSVPVTPAPQYRVRVFSYDRIEYAQIMSP
Ga0314788_162297_6_4013300034666SoilMRSLRPFRQLALGALLLLATPGVAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVNNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP
Ga0373948_0209669_162_5093300034817Rhizosphere SoilLLATPGAAPARELQPLMHGWEQHFSVTWDTRQRHGRLEVEGYVHNRSPYRVGNLRVLVDSLDSAGRIVDQRVSWVMGDLGGDSRIYFDVPVTPADHYRVRVFSYDRVDEASMKFP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.