Metagenome / Metatranscriptome Family F077332

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077332
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	55 residues
Representative Sequence	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Number of Associated Samples	92
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	22.22 %
% of genes near scaffold ends (potentially truncated)	17.95 %
% of genes from short scaffolds (< 2000 bps)	87.18 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.701 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (48.718 % of family members)
Environment Ontology (ENVO)	Unclassified (70.085 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.325 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.95% β-sheet: 24.39% Coil/Unstructured: 53.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF04545	Sigma70_r4	5.98
PF04308	RNaseH_like	2.56
PF04542	Sigma70_r2	2.56
PF00011	HSP20	0.85
PF00293	NUDIX	0.85
PF02142	MGS	0.85
PF06067	DUF932	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.56
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.56
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.56
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.56
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
All Organisms	root	All Organisms	45.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Viruses	superkingdom	All Organisms → Viruses	37.61 %
cellular organisms	root	All Organisms → cellular organisms	7.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	31.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	31.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.71 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	31.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	4.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.71 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	31.62 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4.27 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1.71 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	4.27 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1.71 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4.27 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	1.71 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4.27 %
Pelagibacteraceae bacterium TMED216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED216	1.71 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	3.42 %
Pelagibacteraceae bacterium TMED216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED216	1.71 %
Galbibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Galbibacter	0.85 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.98 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3.42 %
Pelagibacteraceae bacterium TMED216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED216	1.71 %
Galbibacter marinus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Galbibacter → Galbibacter marinus	0.85 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10039780	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2128	Open in IMG/M
3300000116\|DelMOSpr2010_c10078163	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1320	Open in IMG/M
3300000116\|DelMOSpr2010_c10261085	Not Available	523	Open in IMG/M
3300002835\|B570J40625_100292112	Not Available	1659	Open in IMG/M
3300005731\|Ga0076919_1017422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Galbibacter → Galbibacter marinus	1516	Open in IMG/M
3300006025\|Ga0075474_10157968	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	709	Open in IMG/M
3300006027\|Ga0075462_10014622	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2529	Open in IMG/M
3300006029\|Ga0075466_1121959	Not Available	690	Open in IMG/M
3300006400\|Ga0075503_1612293	Not Available	684	Open in IMG/M
3300006637\|Ga0075461_10123148	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	806	Open in IMG/M
3300006637\|Ga0075461_10223789	Not Available	558	Open in IMG/M
3300006802\|Ga0070749_10153579	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1337	Open in IMG/M
3300006802\|Ga0070749_10319063	Not Available	868	Open in IMG/M
3300006802\|Ga0070749_10332935	Not Available	846	Open in IMG/M
3300006802\|Ga0070749_10345435	Not Available	828	Open in IMG/M
3300006802\|Ga0070749_10654513	Not Available	564	Open in IMG/M
3300006802\|Ga0070749_10680924	Not Available	550	Open in IMG/M
3300006802\|Ga0070749_10746023	Not Available	521	Open in IMG/M
3300006810\|Ga0070754_10027741	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3204	Open in IMG/M
3300006867\|Ga0075476_10154637	Not Available	854	Open in IMG/M
3300006868\|Ga0075481_10049196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1616	Open in IMG/M
3300006874\|Ga0075475_10217985	Not Available	811	Open in IMG/M
3300006916\|Ga0070750_10250888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	768	Open in IMG/M
3300006919\|Ga0070746_10154981	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
3300006919\|Ga0070746_10364962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED216	652	Open in IMG/M
3300006919\|Ga0070746_10445841	Not Available	575	Open in IMG/M
3300007229\|Ga0075468_10007748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4342	Open in IMG/M
3300007229\|Ga0075468_10027684	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2040	Open in IMG/M
3300007234\|Ga0075460_10201789	Not Available	676	Open in IMG/M
3300007344\|Ga0070745_1009769	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4596	Open in IMG/M
3300007345\|Ga0070752_1118069	All Organisms → Viruses → Predicted Viral	1118	Open in IMG/M
3300007363\|Ga0075458_10050931	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1303	Open in IMG/M
3300007538\|Ga0099851_1026310	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2341	Open in IMG/M
3300007538\|Ga0099851_1208089	Not Available	710	Open in IMG/M
3300007538\|Ga0099851_1337026	Not Available	528	Open in IMG/M
3300007540\|Ga0099847_1121313	Not Available	787	Open in IMG/M
3300007541\|Ga0099848_1057083	Not Available	1560	Open in IMG/M
3300007541\|Ga0099848_1234301	Not Available	647	Open in IMG/M
3300007542\|Ga0099846_1032833	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1995	Open in IMG/M
3300007778\|Ga0102954_1266538	Not Available	517	Open in IMG/M
3300008012\|Ga0075480_10148482	Not Available	1274	Open in IMG/M
3300009000\|Ga0102960_1222573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	671	Open in IMG/M
3300009001\|Ga0102963_1226101	Not Available	743	Open in IMG/M
3300009027\|Ga0102957_1177779	Not Available	759	Open in IMG/M
3300009076\|Ga0115550_1291594	Not Available	525	Open in IMG/M
3300009165\|Ga0105102_10273634	Not Available	867	Open in IMG/M
3300009169\|Ga0105097_10611168	Not Available	614	Open in IMG/M
3300009170\|Ga0105096_10714701	Not Available	532	Open in IMG/M
3300009193\|Ga0115551_1502370	Not Available	517	Open in IMG/M
3300009437\|Ga0115556_1121696	Not Available	981	Open in IMG/M
3300009495\|Ga0115571_1182445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	865	Open in IMG/M
3300010296\|Ga0129348_1002686	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6480	Open in IMG/M
3300010299\|Ga0129342_1328655	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	523	Open in IMG/M
3300010316\|Ga0136655_1198612	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	597	Open in IMG/M
3300010389\|Ga0136549_10143424	All Organisms → Viruses → Predicted Viral	1080	Open in IMG/M
3300013004\|Ga0164293_10407650	Not Available	914	Open in IMG/M
3300013010\|Ga0129327_10156094	Not Available	1138	Open in IMG/M
3300016676\|Ga0182054_133528	Not Available	568	Open in IMG/M
3300016776\|Ga0182046_1169794	Not Available	1046	Open in IMG/M
3300017697\|Ga0180120_10159767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	951	Open in IMG/M
3300017818\|Ga0181565_10708674	Not Available	638	Open in IMG/M
3300017950\|Ga0181607_10325177	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300017951\|Ga0181577_10683576	Not Available	626	Open in IMG/M
3300017956\|Ga0181580_10063209	All Organisms → Viruses → Predicted Viral	2773	Open in IMG/M
3300017986\|Ga0181569_10219070	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1335	Open in IMG/M
3300017987\|Ga0180431_10027896	Not Available	5524	Open in IMG/M
3300018049\|Ga0181572_10649129	Not Available	638	Open in IMG/M
3300018420\|Ga0181563_10042007	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3301	Open in IMG/M
3300018426\|Ga0181566_10169442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1631	Open in IMG/M
3300018682\|Ga0188851_1010757	All Organisms → Viruses → Predicted Viral	1206	Open in IMG/M
3300019096\|Ga0188835_1017142	Not Available	583	Open in IMG/M
3300019098\|Ga0188859_1011533	Not Available	521	Open in IMG/M
3300019122\|Ga0188839_1003647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2205	Open in IMG/M
3300019122\|Ga0188839_1026222	Not Available	586	Open in IMG/M
3300020048\|Ga0207193_1273498	Not Available	1246	Open in IMG/M
3300020174\|Ga0181603_10140392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1061	Open in IMG/M
3300020176\|Ga0181556_1274988	Not Available	589	Open in IMG/M
3300021335\|Ga0213867_1050222	All Organisms → Viruses → Predicted Viral	1598	Open in IMG/M
3300021364\|Ga0213859_10093599	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1425	Open in IMG/M
3300021425\|Ga0213866_10315589	Not Available	780	Open in IMG/M
3300021958\|Ga0222718_10058445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2411	Open in IMG/M
3300021958\|Ga0222718_10267571	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	900	Open in IMG/M
3300021959\|Ga0222716_10209517	Not Available	1228	Open in IMG/M
3300021959\|Ga0222716_10519348	Not Available	666	Open in IMG/M
3300021964\|Ga0222719_10186968	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1429	Open in IMG/M
3300021964\|Ga0222719_10399547	Not Available	855	Open in IMG/M
3300022061\|Ga0212023_1019265	Not Available	920	Open in IMG/M
3300022063\|Ga0212029_1042580	Not Available	652	Open in IMG/M
3300022065\|Ga0212024_1004502	Not Available	1813	Open in IMG/M
3300022065\|Ga0212024_1017495	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1143	Open in IMG/M
3300022065\|Ga0212024_1046767	Not Available	755	Open in IMG/M
3300022176\|Ga0212031_1003159	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1888	Open in IMG/M
3300022200\|Ga0196901_1132109	Not Available	845	Open in IMG/M
3300022200\|Ga0196901_1246479	Not Available	555	Open in IMG/M
3300022923\|Ga0255783_10202966	Not Available	893	Open in IMG/M
(restricted) 3300023210\|Ga0233412_10095686	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1243	Open in IMG/M
3300025508\|Ga0208148_1106762	Not Available	595	Open in IMG/M
3300025610\|Ga0208149_1047535	All Organisms → Viruses → Predicted Viral	1119	Open in IMG/M
3300025620\|Ga0209405_1106955	Not Available	791	Open in IMG/M
3300025630\|Ga0208004_1062674	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	966	Open in IMG/M
3300025635\|Ga0208147_1040631	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1207	Open in IMG/M
3300025653\|Ga0208428_1031126	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1703	Open in IMG/M
3300025666\|Ga0209601_1134925	Not Available	701	Open in IMG/M
3300025687\|Ga0208019_1013372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3407	Open in IMG/M
3300025751\|Ga0208150_1191690	Not Available	634	Open in IMG/M
3300025759\|Ga0208899_1087447	Not Available	1197	Open in IMG/M
3300025759\|Ga0208899_1111490	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1000	Open in IMG/M
3300025767\|Ga0209137_1102666	Not Available	1140	Open in IMG/M
3300025767\|Ga0209137_1179323	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	736	Open in IMG/M
3300025769\|Ga0208767_1231359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED216	594	Open in IMG/M
3300025815\|Ga0208785_1068791	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	938	Open in IMG/M
3300025818\|Ga0208542_1035301	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1614	Open in IMG/M
3300025818\|Ga0208542_1133807	Not Available	686	Open in IMG/M
3300025879\|Ga0209555_10401941	Not Available	501	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10384113	Not Available	612	Open in IMG/M
3300033993\|Ga0334994_0496575	Not Available	567	Open in IMG/M
3300034374\|Ga0348335_008992	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5686	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	84.62%
Freshwater	Environmental → Aquatic → Freshwater	10.26%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.27%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	55.56%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	13.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.98%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.13%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.13%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.56%
Lake	Environmental → Aquatic → Freshwater → Lake	2.56%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.56%
Inlet	Environmental → Aquatic → Marine → Inlet	1.71%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	55.56%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	11.11%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.71%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	48.72%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	11.11%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	5.13%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	5.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	4.27%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	4.27%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.56%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.56%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.56%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.56%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.71%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.85%
M	Environmental → Aquatic → Marine → Unclassified → Unclassified → M	0.85%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.85%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.85%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005731	Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009437	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300010389	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300016676	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011513AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016776	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017987	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018682	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1	Environmental	Open in IMG/M
3300019096	Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p1	Environmental	Open in IMG/M
3300019098	Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1	Environmental	Open in IMG/M
3300019122	Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022061	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022923	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG	Environmental	Open in IMG/M
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025620	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025666	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025767	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025818	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025879	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_100397802	3300000116	Marine	MKRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
DelMOSpr2010_100781633	3300000116	Marine	MRYTLRVNCGNGQTENIWSGNEMSEAIRLEDIAIKHWGKDNVWIADVVTEISVG*
DelMOSpr2010_102610852	3300000116	Marine	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
B570J40625_1002921121	3300002835	Freshwater	MRYILKVNCGNGQIENIWSGNEVSEAIRLEDIAIKHWGKDNVWICDCLMEMLAG*
Ga0076919_10174224	3300005731	M	MRYTLRVINPENGQISNIWSGDEMSEAIHYEAIAIKHWGKENVWIADNVSELMVG*
Ga0075474_101579682	3300006025	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG*
Ga0075462_100146226	3300006027	Aqueous	MRYTLRVHCGNGCIENIWSGDEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG*
Ga0075466_11219593	3300006029	Aqueous	MRYTLRVNCGNGQIENIWSGNVMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0075503_16122931	3300006400	Aqueous	LKVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG*
Ga0075461_101231481	3300006637	Aqueous	MMRYTLRVHCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0075461_102237892	3300006637	Aqueous	MKRYTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070749_101535792	3300006802	Aqueous	MRYTLRVNCGNGQTENIWSGDEMSEAIHFEAIAIKHWGKNNVWIVDAVTEISVG*
Ga0070749_103190633	3300006802	Aqueous	MSRYTLRVNCGDGQIENIWSGNEMSEAMHFEAIAIKHWGKDNVWICDNLQEIMVG*
Ga0070749_103329353	3300006802	Aqueous	MKRYTLRVHCGDGCIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070749_103454354	3300006802	Aqueous	MRYILKVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG*
Ga0070749_106545132	3300006802	Aqueous	MRYTLKVSYGDGIMNIWAGNDMSEAIRLEGIAIKQWGKENVWIADAIQEILVG*
Ga0070749_106809243	3300006802	Aqueous	MRYTLRVHCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070749_107460232	3300006802	Aqueous	MRYTLRVNCGNGQIENIWSGNAMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070754_100277415	3300006810	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNIWIADAVTEILVG*
Ga0075476_101546373	3300006867	Aqueous	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0075481_100491965	3300006868	Aqueous	MRYTLRVNCGNGQTENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG*
Ga0075475_102179854	3300006874	Aqueous	MRYTLRVNCSDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070750_102508881	3300006916	Aqueous	FMYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070746_101549814	3300006919	Aqueous	MKRFTLRVHCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070746_103649622	3300006919	Aqueous	MRYTLRVINPENGQISNIWSGGEMSEAIHYEAIAIKHWGKENVWIADNVLELMVG*
Ga0070746_104458411	3300006919	Aqueous	MRYTLKVSYGDGIMNIWAGNDMSEAIRLEGIAIKQWGKDNVWIADAIQEILVG*
Ga0075468_100077481	3300007229	Aqueous	GNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0075468_100276843	3300007229	Aqueous	MYIKRLRDMKRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0075460_102017892	3300007234	Aqueous	MKRYTLRVHCGDGCIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070745_10097697	3300007344	Aqueous	MYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0070752_11180693	3300007345	Aqueous	MRYTLRVNGDNDQIENIWSGNEMSEAIRFEAIAIKHWGKDNVWVCDNLQEILVG*
Ga0075458_100509313	3300007363	Aqueous	MYIKRLRDMKRYTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0099851_10263105	3300007538	Aqueous	MYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0099851_12080892	3300007538	Aqueous	LEKRKIKVMSRYTLRVHCGNGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWICDNLQEMMVG*
Ga0099851_13370262	3300007538	Aqueous	MRYTLRVNCGNGQTENIWSGNEMSEAIRLEAIAINHWGKDNVWICDNLQEMMVG*
Ga0099847_11213133	3300007540	Aqueous	MRYTLRVHCGNGCIENIWSGDEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0099848_10570831	3300007541	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG*
Ga0099848_12343012	3300007541	Aqueous	MSRFTLRVNCGNGQIENIWSGNEMSEAMHFEAIAIKHWGKDNVWICDNLQEMMVG*
Ga0099846_10328335	3300007542	Aqueous	MYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIRLEDIAIKHWGKDNVWICDNLQE
Ga0102954_12665381	3300007778	Water	MRYTLRVSYGDEIMNIWVGDDMSEAIRLEGIAIKQWGKDNVWIADAIQEILVG*
Ga0075480_101484823	3300008012	Aqueous	MRYTLRVNCGNGQTENIWSGDEMSEAIHFEAIAIKHWGKNNVWIVD
Ga0102960_12225732	3300009000	Pond Water	MYIKRLRDMKRYTLRVHCGDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0102963_12261012	3300009001	Pond Water	MRFTLRVNRGNGQIENIWSGNEMSEAIYFEAVAINHWGKDNVWICDNLQEKMVG*
Ga0102957_11777793	3300009027	Pond Water	MKRYTLKVHCGNGQIEDIWSGNWMSEAIHYEAIAIKHWGKDNVWICD
Ga0115550_12915941	3300009076	Pelagic Marine	MRYTLRVNGGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDNLQEIMVG*
Ga0105102_102736342	3300009165	Freshwater Sediment	MRYILKVNCGNGQIENIWSGNEVSEAIRLEAIAIKHWGKDNVWICDCLMEMLAG*
Ga0105097_106111681	3300009169	Freshwater Sediment	MRRYILKVNCGNGQIENIWSGNEVSEAIRLEAIAIKHWGKDNVWICDCLMEMLAG*
Ga0105096_107147012	3300009170	Freshwater Sediment	FVYLRILKIKVMRYILKVNCGNSQIENIWSGNEVSEAIRLEAIAIKHWGKDNVWICNCLMEMLAG*
Ga0115551_15023701	3300009193	Pelagic Marine	RYTLRVHCGDGRIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0115556_11216962	3300009437	Pelagic Marine	MKRYTLRVHCGDGRIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG*
Ga0115571_11824452	3300009495	Pelagic Marine	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEDIAIKHWGKDNVWISDSVTEISVG*
Ga0129348_100268612	3300010296	Freshwater To Marine Saline Gradient	MKRFTLRVHCGDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEISVG*
Ga0129342_13286552	3300010299	Freshwater To Marine Saline Gradient	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEDIAIKHWGKDNVWICDNLQEIMVG*
Ga0136655_11986121	3300010316	Freshwater To Marine Saline Gradient	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAINHWGKDNVWICDNLQEIMVG*
Ga0136549_101434243	3300010389	Marine Methane Seep Sediment	MRYTLRVNRGNGQIENIWSGNEMSEAIHFEAIAINHWGKDNVWICDNLQEKMVG*
Ga0164293_104076501	3300013004	Freshwater	MRYILKVNCGNGQIENIWSGNEVSEAIRLEDIAIKHWGKDNVWICDCLMEILAG*
Ga0129327_101560944	3300013010	Freshwater To Marine Saline Gradient	MRYTLRVNCGNGQTENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0182054_1335282	3300016676	Salt Marsh	MRYILKVNCGDGRIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0182046_11697943	3300016776	Salt Marsh	MRYILKVNCGDGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWICDCVMEMLVG
Ga0180120_101597672	3300017697	Freshwater To Marine Saline Gradient	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAINHWGKDNVWICDNLQEIMVG
Ga0181565_107086742	3300017818	Salt Marsh	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAINHWGRDNVWLADAVTEISVG
Ga0181607_103251773	3300017950	Salt Marsh	MRYTLRVSYGDEIMNIWVGDDMSEAIRLEGIAIKQWGKDNVWIADAIQEILVG
Ga0181577_106835761	3300017951	Salt Marsh	MKRYTLRVHCGDGCIENIWSGDEMSEAIRLEAIAIKHWGRDNVWLADAVTEISVG
Ga0181580_100632093	3300017956	Salt Marsh	MGYILKVNCGDGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0181569_102190703	3300017986	Salt Marsh	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWLADAVTEISVG
Ga0180431_100278962	3300017987	Hypersaline Lake Sediment	MRYTLKVSYGDEIMNIWVGDDMSEAIHFETIAIKQWGRCNVWICDNLQEIMVG
Ga0181572_106491293	3300018049	Salt Marsh	FLRKCLTRTDLFLIFMYIKRLRDMKRYTLRVHCSDGQIENIWSGDEMSEAIRLEAIAINHWGRDNVWLADAVTEISVG
Ga0181563_100420074	3300018420	Salt Marsh	MKRFTLRVYCGNGQIENIWSGDEMSEAIRLEAIAINHWGRDNVWLADAVTEISVG
Ga0181566_101694421	3300018426	Salt Marsh	KRYTLRVHCGDGCIENIWSGDEMSEAIHFEAIAIKHWGRDNVWLADAVTEISVG
Ga0188851_10107572	3300018682	Freshwater Lake	MSRYTLKVHCGNGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWVCDNMQEIMVG
Ga0188835_10171422	3300019096	Freshwater Lake	MVMSRYTLKVHCGNGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWVCDNMQEIMVG
Ga0188859_10115331	3300019098	Freshwater Lake	MVMSRYTLKVHCGNGWIENIWSGDEMSEAIRLEDIAIKHWGKDNVWVCDNMQEIMVG
Ga0188839_10036473	3300019122	Freshwater Lake	MKRYTLRVNCVEVCRDIWSGDEMSEAIRLEAIAIKQWGKDNVWICDNLQEMMVG
Ga0188839_10262221	3300019122	Freshwater Lake	VKANSVKFKKIKVMSRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDNLQETMVG
Ga0207193_12734984	3300020048	Freshwater Lake Sediment	MRYILKVNCGNGQIENIWSGNEVSEAIRLEAIAIKHWGKDNVWICDCLMEMLAG
Ga0181603_101403921	3300020174	Salt Marsh	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTE
Ga0181556_12749882	3300020176	Salt Marsh	MKRFTLRVYCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWLADAVTEISVG
Ga0213867_10502224	3300021335	Seawater	MRYTLKVSYGDGIMNIWAGDDMSEAIRLEGIAIKQWGKDNVWIADAIQEILVG
Ga0213859_100935992	3300021364	Seawater	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEISVG
Ga0213866_103155894	3300021425	Seawater	KRFTLRVYCGNGQIENIWSGDEMSEAIRLEAIAIKQWGRDNVWIADAVTEILVG
Ga0222718_100584453	3300021958	Estuarine Water	MKRYTLRVHCGDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0222718_102675713	3300021958	Estuarine Water	MRYTLRVHCGDGRIENIWSGDEMSEAIRLEAIAIKHWGKDNVWIADAVTEILVG
Ga0222716_102095174	3300021959	Estuarine Water	MRYILKVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0222716_105193483	3300021959	Estuarine Water	MRYTLRVNGGNGQIENIWSGDEMSEAIRLEAIAIKHWGKDNVWIADAVTEILVG
Ga0222719_101869681	3300021964	Estuarine Water	MRYTLRVNCGNGQTENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADAVTEISVG
Ga0222719_103995473	3300021964	Estuarine Water	MKRYTLRVNCGNGQIENIWSGNWMSEAIHFEAIAIKHWGKDNVWICDNFQETMVG
Ga0212023_10192651	3300022061	Aqueous	MKRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0212029_10425801	3300022063	Aqueous	MSRYTLRVHCGNGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWICDNLQEMMVG
Ga0212024_10045021	3300022065	Aqueous	LIHYIYIIIKVMRYILKVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0212024_10174955	3300022065	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0212024_10467672	3300022065	Aqueous	MRYTLRVNCGNGQIENIWSGNAMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0212031_10031594	3300022176	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0196901_11321094	3300022200	Aqueous	MKRFTLRVHCGDGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEISVG
Ga0196901_12464793	3300022200	Aqueous	MSRYTLRVHCGNGQIENIWSGDEMSEAIRLEDIAIKHWGKDNVWICDNLQEMM
Ga0255783_102029664	3300022923	Salt Marsh	MKRYTLRVHCGDGCIENIWSGDEMSEAIHFEAIAIKHWGRDNVWLADAVTEISVG
(restricted) Ga0233412_100956862	3300023210	Seawater	MRYLLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDAVWICDNLQEIMVG
Ga0208148_11067623	3300025508	Aqueous	MRYTLRVNCGNGQIENIWSGNVMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0208149_10475354	3300025610	Aqueous	LRVNCGNGQTENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG
Ga0209405_11069552	3300025620	Pelagic Marine	MRYTLRVNGGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDNLQEIMVG
Ga0208004_10626741	3300025630	Aqueous	MKRYTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0208147_10406313	3300025635	Aqueous	LTRTHILLIFMYIKRLRDMKRYTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0208428_10311263	3300025653	Aqueous	MRYTLRVNCGNGQTENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG
Ga0209601_11349252	3300025666	Pelagic Marine	MKRYTLRVHCGDGRIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0208019_10133722	3300025687	Aqueous	MKRFTLRVHCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0208150_11916901	3300025751	Aqueous	IHYIYIIIKVMRYILKVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG
Ga0208899_10874472	3300025759	Aqueous	MRYTLRVHCGNGCIENIWSGDEMSEAIHFEAIAIKHWGKNNVWIVDAVTEISVG
Ga0208899_11114902	3300025759	Aqueous	MRYTLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWIADVVTEISVG
Ga0209137_11026664	3300025767	Marine	MRYTLRVSCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDAVWICDNLQEIMVG
Ga0209137_11793232	3300025767	Marine	GGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDNLQEVLVG
Ga0208767_12313592	3300025769	Aqueous	MRYTLRVINPENGQISNIWSGGEMSEAIHYEAIAIKHWGKENVWIADNVLELMVG
Ga0208785_10687911	3300025815	Aqueous	RLTRINIFGIFMYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0208542_10353011	3300025818	Aqueous	MKRFTLRVHCGNGQIENIWSGDEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG
Ga0208542_11338073	3300025818	Aqueous	MMRYTLRVHCGNGQIENIWSGNEMSEAIHFEAIAIKHWGRDNVWIADAVTEILVG
Ga0209555_104019412	3300025879	Marine	MLNKIGDMRYTLRVNGGNDQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDNLQEVLV
(restricted) Ga0233413_103841131	3300027996	Seawater	MRYLLRVNCGNGQIENIWSGNEMSEAIHFEAIAIKHWGKDNVWICDKLQEMMVG
Ga0334994_0496575_104_268	3300033993	Freshwater	MRYILKVNCGNDQIENIWSGNEVSEAIRLEAIAIKHWGKDNVWICDCLMEMLAG
Ga0348335_008992_1817_2005	3300034374	Aqueous	MYIKRLRVMRYTLRVNCGNGQIENIWSGNEMSEAIRLEAIAIKHWGRDNVWIADAVTEILVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters