Metagenome / Metatranscriptome Family F077307

Basic Information
Family ID	F077307
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	60 residues
Representative Sequence	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKDKL
Number of Associated Samples	81
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	75.21 %
% of genes near scaffold ends (potentially truncated)	19.66 %
% of genes from short scaffolds (< 2000 bps)	76.92 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (85.470 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (27.350 % of family members)
Environment Ontology (ENVO)	Unclassified (74.359 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (79.487 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1JGI24028J26656_100014727 2M3t6FKB1_14100182 3JGI26470J50227_10199953 4JGI26470J50227_10240342 5JGI26470J50227_10259892 6Ga0031658_10065924 7Ga0065169_10003395 8Ga0065171_10406173 9Ga0007792_100562423 10Ga0007792_101645782 11Ga0049083_101963541 12Ga0049083_102218471 13Ga0049081_101255414 14Ga0049085_100577933 15Ga0049085_100970504 16Ga0049085_101905972 17Ga0049082_100041018 18Ga0049082_101978262 19Ga0049082_102115813 20Ga0007866_10360712 21Ga0070744_100052809 22Ga0070744_100308825 23Ga0102817_11479103 24Ga0102913_11352944 25Ga0102863_11212861 26Ga0102865_10950293 27Ga0102902_12093862 28Ga0102859_10748803 29Ga0105746_12656742 30Ga0102831_12584572 31Ga0102829_12002831 32Ga0114973_101611222 33Ga0114962_1001405114 34Ga0114962_100559284 35Ga0114962_104371531 36Ga0114962_106624501 37Ga0114962_106801271 38Ga0114963_100992082 39Ga0114963_105689441 40Ga0114968_100876436 41Ga0114968_102726512 42Ga0114966_1002507613 43Ga0073936_104393762 44Ga0114969_102733922 45Ga0114969_104261752 46Ga0114959_101199265 47Ga0114959_104052322 48Ga0114976_104951511 49Ga0114951_101480483 50Ga0114951_105925141 51Ga0114958_103140954 52Ga0114960_101862841 53Ga0114960_103989582 54Ga0114967_103420483 55Ga0136644_106368082 56Ga0133913_106681045 57Ga0138271_11135303 58Ga0164294_1002162611 59Ga0164295_110783702 60Ga0164296_12525982 61Ga0177922_104300544 62Ga0181357_11829312 63Ga0211732_13627071 64Ga0211734_110642742 65Ga0211734_111597682 66Ga0211731_111066744 67Ga0214164_10002208 68Ga0214166_10346086 69Ga0194047_101192184 70Ga0194048_100000231 71Ga0194048_101476194 72Ga0194048_103008382 73Ga0194060_1000014477 74Ga0194060_1000839315 75Ga0222712_102448673 76Ga0212088_105391852 77Ga0214921_100073073 78Ga0214921_100248743 79Ga0214921_100917427 80Ga0214921_101326761 81Ga0214923_100376027 82Ga0214923_100756689 83Ga0214923_100761633 84Ga0214923_105077992 85Ga0214919_1000330826 86Ga0214919_100675305 87Ga0244775_100328243 88Ga0244775_103181512 89Ga0244775_108014272 90Ga0209083_10525725 91Ga0208737_10034544 92Ga0208503_10041828 93Ga0208613_11084933 94Ga0208613_11541932 95Ga0208797_10485842 96Ga0208923_10665531 97Ga0208966_10074028 98Ga0208966_10486094 99Ga0208966_11660652 100Ga0208951_11768642 101Ga0208942_10822803 102Ga0208942_11588981 103Ga0208975_11099434 104Ga0209087_12638231 105Ga0209190_11354163 106Ga0209085_11611572 107Ga0209084_101002414 108Ga0209596_100126130 109Ga0209829_102139122 110Ga0209777_104856971 111Ga0209191_13282591 112Ga0304730_12033283 113Ga0239581_10326893 114Ga0316218_12320851 115Ga0315270_108406222 116Ga0334991_0010885_3746_3937 117Ga0335029_0067457_75_254
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1JGI24028J26656_100014727 2JGI26470J50227_10199953 3Ga0049083_102218471 4Ga0049082_102115813 5Ga0114962_104371531 6Ga0114976_104951511 7Ga0136644_106368082 8Ga0214923_100756689 9Ga0315270_108406222
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0102829_12002831 2JGI26470J50227_10240342 3JGI26470J50227_10259892 4Ga0031658_10065924 5Ga0065169_10003395 6Ga0007792_100562423 7Ga0049081_101255414 8Ga0049082_102115813 9Ga0070744_100308825 10Ga0102902_12093862 11Ga0102831_12584572 12Ga0114963_100992082 13Ga0164295_110783702 14Ga0164296_12525982 15Ga0177922_104300544 16Ga0211734_110642742 17Ga0194047_101192184 18Ga0209087_12638231 19Ga0315270_108406222 20Ga0335029_0067457_75_254
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.38% β-sheet: 0.00% Coil/Unstructured: 58.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF06429	Flg_bbr_C	2.56
PF14090	HTH_39	2.56
PF13203	DUF2201_N	1.71
PF13186	SPASM	1.71
PF00012	HSP70	1.71
PF10765	Phage_P22_NinX	1.71
PF00542	Ribosomal_L12	0.85
PF01764	Lipase_3	0.85
PF00004	AAA	0.85
PF06146	PsiE	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	2.56
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	2.56
COG1749	Flagellar hook protein FlgE	Cell motility [N]	2.56
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	2.56
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	2.56
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG0222	Ribosomal protein L7/L12	Translation, ribosomal structure and biogenesis [J]	0.85
COG1344	Flagellin and related hook-associated protein FlgL	Cell motility [N]	0.85
COG3223	Phosphate starvation-inducible membrane PsiE (function unknown)	General function prediction only [R]	0.85
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.56 %
Unclassified	root	N/A	7.69 %
Viruses	superkingdom	All Organisms → Viruses	89.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.56 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	85.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.85 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.85 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	85.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	7.69 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	85.47 %

Name	Rank	Taxonomy	Distribution
Candidatus Saccharibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	0.85 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	85.47 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	82.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	7.69 %
unclassified Chlorobiota	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota	0.85 %
unclassified Saccharibacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Candidatus Saccharibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	0.85 %
Chlorobiota bacteirum	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Unclassified	root	N/A	7.69 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	82.05 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002091\|JGI24028J26656_1000147	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30529	Open in IMG/M
3300002138\|M3t6FKB1_1410018	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	694	Open in IMG/M
3300003375\|JGI26470J50227_1019995	Not Available	1485	Open in IMG/M
3300003375\|JGI26470J50227_1024034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1293	Open in IMG/M
3300003375\|JGI26470J50227_1025989	All Organisms → Viruses → Predicted Viral	1218	Open in IMG/M
3300003860\|Ga0031658_1006592	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	2004	Open in IMG/M
3300004688\|Ga0065169_1000339	All Organisms → Viruses → Predicted Viral	1794	Open in IMG/M
3300004692\|Ga0065171_1040617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	748	Open in IMG/M
3300004805\|Ga0007792_10056242	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1192	Open in IMG/M
3300004805\|Ga0007792_10164578	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	682	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	84.62%
Marine	Environmental → Aquatic → Marine	14.53%
Unclassified	Environmental → Aquatic → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	0.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.55%
Lake	Environmental → Aquatic → Freshwater → Lake	54.70%
Lentic	Environmental → Aquatic → Freshwater → Lentic	29.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.71%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	8.55%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.71%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	53.85%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	25.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.13%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	5.13%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	8.55%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	4.27%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.82%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	10.26%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.84%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	27.35%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.85%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.71%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.71%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	13.68%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.85%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.85%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002138	M3t6FKB1 (102f)	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004688	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Aug07 (version 2)	Environmental	Open in IMG/M
3300004692	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2)	Environmental	Open in IMG/M
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M

Showing 1 to 10 of 81 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24028J26656_100014727	3300002091	Lentic	MTAYKTSIKEVFSDDTNSPFWQRLRASPAYTKFEEDLAHITGQSLKHNMPYNQIPKDKIGVEE*
M3t6FKB1_14100182	3300002138	Marine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYKKFEDDLAHIMEESFKHNMPYNQIPKDKL*
JGI26470J50227_10199953	3300003375	Freshwater	MKVYKTSLKEVFSDDPNSPFWQRLRASPGYTKFEEDLAHIMEESLKHGVPYNDIPEESKDE*
JGI26470J50227_10240342	3300003375	Freshwater	MKVYKTSLEEVFSNDPNNPFWQRLRASPGYAKFEEDLAHIMEESLKHGVPYNDIPKESKDE*
JGI26470J50227_10259892	3300003375	Freshwater	MKTYKTSIKEVFSDDPNSPFWQRIRANPEYKKFEEDLAHIAGQSLKHNRPYNQNPKDKNGVEE*
Ga0031658_10065924	3300003860	Freshwater Lake Sediment	MKAYKTSIKEVFSDDTNSPFWQRLRSNPGYTKFEDDLAHIIEESRKHNMPYNQIPSDKIGVEE*
Ga0065169_10003395	3300004688	Freshwater	MKTYKTSLKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNMPYDQIPKDNIGVEE*
Ga0065171_10406173	3300004692	Freshwater	YKTSLKEVFRDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNMPYDQIPKDKIGVEE
Ga0007792_100562423	3300004805	Freshwater	MKTYKTSIKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHINEQSLKHNRPYNQIPEDKIGVEP*
Ga0007792_101645782	3300004805	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNMPYNQIPEDKIGVEE*
Ga0049083_101963541	3300005580	Freshwater Lentic	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLVHIMEESFKYNMPYNQIPKEK*
Ga0049083_102218471	3300005580	Freshwater Lentic	VTAYKTSFLEVFKNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIP
Ga0049081_101255414	3300005581	Freshwater Lentic	MTAYKTSFLEVFKNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKVEL*
Ga0049085_100577933	3300005583	Freshwater Lentic	MTAYKTSIKEVFSNDTNSTFWQRLRANPGYTKFEDDLSHVMEESLKHNMPYNQIPKDKIGVEE*
Ga0049085_100970504	3300005583	Freshwater Lentic	MTAYKTSFLEVFKNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKIGVEE*
Ga0049085_101905972	3300005583	Freshwater Lentic	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEQSFKHNMPYNQIPKEK*
Ga0049082_100041018	3300005584	Freshwater Lentic	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEQSFKYNMPYNQIPKEK*
Ga0049082_101978262	3300005584	Freshwater Lentic	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKVEL*
Ga0049082_102115813	3300005584	Freshwater Lentic	MLCYTGRSGVIMEITKVYKTSIKEVFSDDPNSPFWQRLKASPGYAGFEKDLAEIMAESIKHNMPYNQIPKKD*
Ga0007866_10360712	3300006119	Freshwater	MKTYKTSLKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNMPYDQIPKDKIGVEE*
Ga0070744_100052809	3300006484	Estuarine	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHITEESLKHNMPYNQIPRDKIGEKL*
Ga0070744_100308825	3300006484	Estuarine	MKAYKTSIKEVFSNDTNSTFWQRLRANPGYTKFEDDLSHVMEESLKHNMPYNQIPKDKIGVEE*
Ga0102817_11479103	3300007555	Estuarine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIP
Ga0102913_11352944	3300007560	Estuarine	MKAYKTSFLEVFSNDTNSPFWQRLRANPGYTKFEDDLAHITEESLKHNMPYNQIPKDKI
Ga0102863_11212861	3300007622	Estuarine	MEITKVYKTSIKEVFSDDPNSPFWQRLKASPGYAGFEKDLADIMAESIKHNMPYNQIPKKD*
Ga0102865_10950293	3300007639	Estuarine	ITKVYKTSIKEVFSDDPNSPFWQRLKASPGYAGFEKDLADIMAESIKHNMPYNQIPKKD*
Ga0102902_12093862	3300007644	Estuarine	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKIGEKL*
Ga0102859_10748803	3300007708	Estuarine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAYIMEQSFKHNMPYNQIPKEK*
Ga0105746_12656742	3300007973	Estuary Water	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKYNMPYNQIPKEK*
Ga0102831_12584572	3300008996	Estuarine	MTAYKTSIKEVFGNDNNSPFWQRLRANPGYTKFEDDLAHIMEESLKHNMPYNQIPKDKIKVEL*
Ga0102829_12002831	3300009026	Estuarine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKDKL*
Ga0114973_101611222	3300009068	Freshwater Lake	MTAYKTSIKEVFSNDTNSPFWLRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKVEL*
Ga0114962_1001405114	3300009151	Freshwater Lake	MKAYKTSIKEVFSNDTNSPFWQRLRSNPGYTKFEEDLAHDMEESLKHNMPYNQIPKDKIGVEE*
Ga0114962_100559284	3300009151	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNRPYNQITKDKIGVEE*
Ga0114962_104371531	3300009151	Freshwater Lake	KEVFSDDTNNPFWQRLRANPEYKKFEDHLAHINEQSFKHNRPYNQIPKDKIGVEE*
Ga0114962_106624501	3300009151	Freshwater Lake	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK*
Ga0114962_106801271	3300009151	Freshwater Lake	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEQSFKHNMPYNQIPKDKL*
Ga0114963_100992082	3300009154	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPEYKKFEDHLAHINEQSFKHNRPYNQIPKDKIGVEE*
Ga0114963_105689441	3300009154	Freshwater Lake	MKAYKTSIKEVFSDDTNNPFWQRLRANPEYKKFEDHLAHISEQSLKHNMPYNQIPKNKIGVEE*
Ga0114968_100876436	3300009155	Freshwater Lake	MTAYKTSIKEVFSDDTNSPFWLRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKVEL*
Ga0114968_102726512	3300009155	Freshwater Lake	MKAYKTSIKEVFSDDPNSPFWQQLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK*
Ga0114966_1002507613	3300009161	Freshwater Lake	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEESLKHNMPYNQIPKDKIKVEL*
Ga0073936_104393762	3300009175	Freshwater Lake Hypolimnion	MTAYKTSIKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNMPYNQIPKDKIGVEE*
Ga0114969_102733922	3300009181	Freshwater Lake	MLAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK*
Ga0114969_104261752	3300009181	Freshwater Lake	KAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESIKHNMPYNQIPKKD*
Ga0114959_101199265	3300009182	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPEYKKFEDHLAHINEQSFKHNMPYNQIPKDKIGVEE*
Ga0114959_104052322	3300009182	Freshwater Lake	MKAYKTSIKEVFSDDTNNPFWQRLQANPEYKKFEDHLAHINGQSLKHNRPYNQIPKDKIGVEE*
Ga0114976_104951511	3300009184	Freshwater Lake	MTTQKTSLEEIFSDDPNSPFWQRLRASPGYTKFEQDLAEIIAASIRHGVPYNQIPRESK*
Ga0114951_101480483	3300009502	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNVPYNQIPKDKIGVEE*
Ga0114951_105925141	3300009502	Freshwater	IKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHDIPYNQIPEDKIGVEE*
Ga0114958_103140954	3300009684	Freshwater Lake	MKTYKTSLKEVFSDDTNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNRPYNQIPKDKIGVEE*
Ga0114960_101862841	3300010158	Freshwater Lake	KAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK*
Ga0114960_103989582	3300010158	Freshwater Lake	MKTYKTSLKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHDRPYNQIPKDKL*
Ga0114967_103420483	3300010160	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKIVVEL*
Ga0136644_106368082	3300010334	Freshwater Lake	MKAYKTSIKEVFSDDLNNPFWQRLKASPGYKKFEDDLAHIIEESFKHNMPYNQIPKDKL*
Ga0133913_106681045	3300010885	Freshwater Lake	MEITKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESIKHNMPYNQIPKKD*
Ga0138271_11135303	3300012780	Freshwater Lake	IKQVFSDDPNSPFWQRLRANPEYKKFEDHLAHINEQSLKHNRPYNQIPKDKNGVEE*
Ga0164294_1002162611	3300013006	Freshwater	YKTSIKEVFSDDLNNPFWQRLKASPGYKKFEHDLAHIIEESFKHNMPYNQIPKDKL*
Ga0164295_110783702	3300013014	Freshwater	MKAYKTSIREVFSDDLNNPFWQRLKASPGYKKFEHDLAHIIEESFKHNMPYNQIPKDKL*
Ga0164296_12525982	3300013093	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPGYIKFEEDLAHITGQSLKHNMPYNQIPKDKNGVEE*
Ga0177922_104300544	3300013372	Freshwater	MRAYKTSIKEVFSNDTNSPFWQRLRANPDYTKFQDDLAHIMEQSLKHNMPYNQIPKDKVEI*
Ga0181357_11829312	3300017777	Freshwater Lake	MKAYKTSIKEVCSDDPDSPFWQRLKANPGYTKFEEDLAHIMEESVKHNMPYNQIPKDKL
Ga0211732_13627071	3300020141	Freshwater	MEITKAYKTSIKEVFSDDPNSPFWQRLKASSGYAGFEKDLAKIMAESIKHNMPYNQIPKK
Ga0211734_110642742	3300020159	Freshwater	MKAYKTSIEQVCSDDPDSPFWQRLKANPGYKKFEDGLAHIMEESVKHNMPYNQIPKDKLXSIDLF
Ga0211734_111597682	3300020159	Freshwater	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYKKFEDDLAHIMEESFKHNMPYNQIPKDKL
Ga0211731_111066744	3300020205	Freshwater	MKAYKTSIEQVCSDDPDSPFWQRLKANPGYKKFEEDLAHIMEESVKHNMPYNQIPKDKL
Ga0214164_10002208	3300021138	Freshwater	MKVYKTSLKEVFSDDPNSPFWQRLRASPGYTKFEEDLAHIMEESLKHGVPYNDIPEESKD
Ga0214166_10346086	3300021139	Freshwater	MKVYKTSLEEVFSNDPNNPFWQRLRASPGYAKFEEDLAHIMEESLKHGVPYNDI
Ga0194047_101192184	3300021354	Anoxic Zone Freshwater	MKAYKTSIKEVFSDDTNNPFWQRLRANPEYKKFEEDLAHITGQSLKHDRPYNQIPKDKL
Ga0194048_100000231	3300021519	Anoxic Zone Freshwater	TFRSRIMKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK
Ga0194048_101476194	3300021519	Anoxic Zone Freshwater	MTAYKTSIKEVFSDDNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNMPYNQIPKDKIGVEE
Ga0194048_103008382	3300021519	Anoxic Zone Freshwater	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEESLKHNMPYNQIPKDKIKVEL
Ga0194060_1000014477	3300021602	Anoxic Zone Freshwater	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK
Ga0194060_1000839315	3300021602	Anoxic Zone Freshwater	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKKD
Ga0222712_102448673	3300021963	Estuarine Water	MKAYKTSIKEVFSDDPNSLFWQRLKASPGYKKFEDDLAHIMEESFKHNMPYNQIPKDKL
Ga0212088_105391852	3300022555	Freshwater Lake Hypolimnion	MTAYKTSIKEVFSDDPNSPFWQRLRASPNYIKFEEDLAHITGQSLKHNMPYDQIPKDKIGVEE
Ga0214921_100073073	3300023174	Freshwater	MKAYKTSIKEVFSDDLNNPFWQRLKASPGYKKFEDDLAHIMKESFKHNMPYNQIPKDKL
Ga0214921_100248743	3300023174	Freshwater	MKAYNTSIKEVFSDDLNNPFWQRLKASPGYKKFEHDLAHIMKESFKHNMPYNQIPKDKL
Ga0214921_100917427	3300023174	Freshwater	MKAYKTSIKEVFSDDLNNPFWQRLKTSPGYKKFQDDLAHIIEESFKHNMPYNQIPKDKL
Ga0214921_101326761	3300023174	Freshwater	MKAYKTSIKEVFSDDLNNPFWQRLKASPGYKKFEDDLAHIMKESFKHNMPY
Ga0214923_100376027	3300023179	Freshwater	MKAYKTSIKEVFSDDLNNPFWQRLKASPGYKKFEDDLAHIIEESFKHNMPYNQIPKDK
Ga0214923_100756689	3300023179	Freshwater	MKAYKTSIKEVFSNDTNSPFWQRLRSNPGYTKFEEDLAHIIEESLKHNA
Ga0214923_100761633	3300023179	Freshwater	MKAYKTSIKEVFSDDLNNPFWQRLTASPGYKKFEDDLAHIIEESFKHNMPYNQIPKDKL
Ga0214923_105077992	3300023179	Freshwater	SIKEVFSNDTNSPFWQRLRSNPGYTKFEEDLAHIIEESLKHNMPYNQIPKDKIGVEE
Ga0214919_1000330826	3300023184	Freshwater	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEESLKHNMPYNQIPRDKIGEKL
Ga0214919_100675305	3300023184	Freshwater	MKAYKTSIKEVFSNDTNSPFWQRLRSNPGYTKFEEDLAHIIEESLKHNMPYNQIPKDKIGVEE
Ga0244775_100328243	3300024346	Estuarine	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEDDLAHITEESLKHNMPYNQIPRDKIGEKL
Ga0244775_103181512	3300024346	Estuarine	MKAYKTSIKEVFSDDTNSPFWQRLRSNPGYTKFEDDLAHIIEESRKHNMPYNQIPSDKIGVEE
Ga0244775_108014272	3300024346	Estuarine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEQSFKHNMPYNQIPKEK
Ga0209083_10525725	3300025162	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNVPYNQIPKDKIGVEE
Ga0208737_10034544	3300025346	Freshwater	VFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNMPYDQIPKDKIGVEE
Ga0208503_10041828	3300025388	Freshwater	MKTYKTSLKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHNMPYDQIPKDKIGVEE
Ga0208613_11084933	3300025616	Freshwater	MKTYKTSIKEVFSDDPNSPFWQRLRANPEYKKFEDHLALINEQSLKHNRPYNQIPEDKIGVEP
Ga0208613_11541932	3300025616	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPGYTKFEEDLAHITGQSLKHNMPYNQIPEDKIGVEE
Ga0208797_10485842	3300027186	Estuarine	SIKEVFSNDTNSTFWQRLRANPGYTKFEDDLSHVMEESLKHNMPYNQIPKDKIGVEE
Ga0208923_10665531	3300027320	Estuarine	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYAGFEKDLADIMAESIKHNMPYNQIPKKD
Ga0208966_10074028	3300027586	Freshwater Lentic	MKAYKTSIKEVFSDDPNSPFWQRLKASPGYTKFEDDLAHIMEQSFKYNMPYNQIPKEK
Ga0208966_10486094	3300027586	Freshwater Lentic	MTAYKTSFLEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKVE
Ga0208966_11660652	3300027586	Freshwater Lentic	MKAYKTSIKEVFSNDTNSPFWQRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKVE
Ga0208951_11768642	3300027621	Freshwater Lentic	MRAYKTSFLEVFSNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDK
Ga0208942_10822803	3300027627	Freshwater Lentic	MTAYKTSIKEVFSNDTNSTFWQRLRANPGYTKFEDDLSHVMEESLKHNMPYNQIPKDKIGVEE
Ga0208942_11588981	3300027627	Freshwater Lentic	MTAYKTSFLEVFKNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQ
Ga0208975_11099434	3300027659	Freshwater Lentic	MTAYKTSFLEVFKNDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKVE
Ga0209087_12638231	3300027734	Freshwater Lake	MTTQKTSLEEIFSDDPNSPFWQRLRASPGYTKFEQDLAEIIAASIRHGVPYNQIPRESK
Ga0209190_11354163	3300027736	Freshwater Lake	MTAYKTSIKEVFSNDTNSPFWLRLRANPGYTKFEEDLAHIMEQSFKHNMPYNQIPKDKVE
Ga0209085_11611572	3300027741	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPEYKKFEDHLAHINEQSFKHNMPYNQIPKDKIGVEE
Ga0209084_101002414	3300027749	Freshwater Lake	MKAYKTSIKEVFSNDTNSPFWQRLRSNPGYTKFEEDLAHDMEESLKHNMPYNQIPKDKIGVEE
Ga0209596_100126130	3300027754	Freshwater Lake	MKAYKTSIKEVFSDDPNSPFWQQLKASPGYTKFEDDLAHIMEESFKHNMPYNQIPKEK
Ga0209829_102139122	3300027777	Freshwater Lake	MKTYKTSLKEVFSDDPNSPFWQRLRANPEYKKFEEDLAHITGQSLKHDRPYNQIPKDKL
Ga0209777_104856971	3300027896	Freshwater Lake Sediment	MKTYKTSIKEVFSDDPNSPFWQRIRANPEYKKFEEDLAHITGQSLKHNRPYDQIPKDKSGVEE
Ga0209191_13282591	3300027969	Freshwater Lake	MTTQKTSLEEIFSDDPNSPFWQRLRASPGYTKFEQDLAEIIAASIRHGVPYNQIPRE
Ga0304730_12033283	3300028394	Freshwater Lake	MKAYKTSIKEVFSDDTNSPFWQRLRANPGYTKFEDDLAHIMEQSLKHNMPYNQIPKDKIVVEL
Ga0239581_10326893	3300029798	Freshwater Lake	MTAYKTSIKEVFSDDTNSPFWQRLRASPDYIKFEEDLAHITGQSLKHNMPYNQIPKDKIGVEE
Ga0316218_12320851	3300032117	Freshwater	MTAYKTSIKEVFSDDTNSPFWQRLRASPGYIKFEEDLAHITGQSLKHNMPYNQIPKDKNGVEE
Ga0315270_108406222	3300032275	Sediment	MKSYKISLKDVFSDDPNSPFWVNLKASPGFTKFEEDLAEIMEESLKHGVPYVQIPKDKSERK
Ga0334991_0010885_3746_3937	3300034013	Freshwater	MKAYKTSIKEVFSNDTNSPFWQRIRANPGYTKFEDDLAHIMEESLKHNMPYNQIPKDKIKVEL
Ga0335029_0067457_75_254	3300034102	Freshwater	MTAQKTSLKEIFSDDPNSPFWQRLRASPGYTKFEQDLAEIMTASIEHGVPYNQITRKEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077307

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences