Basic Information | |
---|---|
Family ID | F077036 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 117 |
Average Sequence Length | 43 residues |
Representative Sequence | MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPK |
Number of Associated Samples | 77 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.98 % |
% of genes near scaffold ends (potentially truncated) | 99.15 % |
% of genes from short scaffolds (< 2000 bps) | 88.89 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (59.829 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (34.188 % of family members) |
Environment Ontology (ENVO) | Unclassified (54.701 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (64.103 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 30.95% β-sheet: 11.90% Coil/Unstructured: 57.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Sediment Freshwater Freshwater Lake Freshwater Lentic Freshwater And Sediment Freshwater And Sediment Freshwater Lake Sediment Freshwater Freshwater, Plankton Freshwater Lake Freshwater Lake Sediment Freshwater Lake Sediment Freshwater Freshwater Freshwater Freshwater Aqueous Estuarine Estuarine Estuarine Water |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25908J49247_100348183 | 3300003277 | Freshwater Lake | MGTRSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEA |
JGI25909J50240_10239061 | 3300003393 | Freshwater Lake | MGTRSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVV |
JGI25909J50240_10434392 | 3300003393 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKA |
Ga0049081_102438021 | 3300005581 | Freshwater Lentic | MGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPK |
Ga0079957_10228697 | 3300005805 | Lake | MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQT |
Ga0070749_101817551 | 3300006802 | Aqueous | MGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAVTQTLPKAVV |
Ga0070749_101834201 | 3300006802 | Aqueous | MGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAVTQ |
Ga0075464_108861671 | 3300006805 | Aqueous | MGTKSIRHIVESTVATYLSTQTDLTTVTFLTGDSA |
Ga0075472_101683712 | 3300006917 | Aqueous | MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPK |
Ga0075458_100312191 | 3300007363 | Aqueous | MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAATQT |
Ga0102828_10354302 | 3300007559 | Estuarine | MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLP |
Ga0102865_10485033 | 3300007639 | Estuarine | MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCD |
Ga0114363_11604451 | 3300008266 | Freshwater, Plankton | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSAR |
Ga0114981_101401521 | 3300009160 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVTFLTGDSAATQTLPKAVV |
Ga0114966_107874152 | 3300009161 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTL |
Ga0105102_102739792 | 3300009165 | Freshwater Sediment | MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAA |
Ga0114969_100624151 | 3300009181 | Freshwater Lake | MGAKSIRHIIESTVATYLATQTDLTTVTFLTGDSAATQTLPKAVVLCES |
Ga0133913_117239103 | 3300010885 | Freshwater Lake | MGTASIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCES |
Ga0133913_128395653 | 3300010885 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLP |
Ga0139557_10218042 | 3300011010 | Freshwater | MGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAARAP |
Ga0139556_10686671 | 3300011011 | Freshwater | MGTRSIRHIVEATVATYLSTQTGLTAVTFLTGDNAATQTLPKA |
Ga0177922_102131082 | 3300013372 | Freshwater | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLPKAVVLCDSA |
Ga0177922_102990222 | 3300013372 | Freshwater | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNA |
Ga0177922_103754281 | 3300013372 | Freshwater | MGTKSIRHICESTLATYLSTQTGLTTVSFLTGDNAATQTLPKA |
Ga0177922_103903762 | 3300013372 | Freshwater | MGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLPKAVVLCDSA |
Ga0177922_110174781 | 3300013372 | Freshwater | MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSAR |
Ga0177922_110912721 | 3300013372 | Freshwater | MGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKA |
Ga0181347_10414731 | 3300017722 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTAVTFLTGDNAAIQTLPKAVVLCD |
Ga0181347_11207192 | 3300017722 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTNLTTVSFLTGDNNATQTLPKAVVLC |
Ga0181362_10242401 | 3300017723 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCD |
Ga0181365_10211093 | 3300017736 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAI |
Ga0181365_10253133 | 3300017736 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAA |
Ga0181365_10386711 | 3300017736 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCEAARAPSD |
Ga0181344_10321741 | 3300017754 | Freshwater Lake | MGTKSIRHIVEATLATYLSTQTGLTAVTFLTGDSAATQT |
Ga0181343_12027252 | 3300017766 | Freshwater Lake | MGTKSIRHIVESTLATYLAAQTDLTTIAFLTGDSAATQTLPKA |
Ga0181358_10447501 | 3300017774 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNSAIQTL |
Ga0181358_11594192 | 3300017774 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCE |
Ga0181358_11791581 | 3300017774 | Freshwater Lake | MGTASIRHIVEYTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARP |
Ga0181357_11251402 | 3300017777 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQT |
Ga0181357_12822231 | 3300017777 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVV |
Ga0181357_12970441 | 3300017777 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTNLTTVSFLTGDNNATQTLPKAVVLCEAARAP |
Ga0181349_11641072 | 3300017778 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQT |
Ga0181349_12300561 | 3300017778 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNN |
Ga0181349_12579021 | 3300017778 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQT |
Ga0181346_10233441 | 3300017780 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAARAP |
Ga0181348_11492962 | 3300017784 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPK |
Ga0181348_11847991 | 3300017784 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSA |
Ga0181348_12563911 | 3300017784 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVV |
Ga0181355_11018291 | 3300017785 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGNNNATQTLPK |
Ga0181355_11214452 | 3300017785 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQ |
Ga0181355_12045011 | 3300017785 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTL |
Ga0181355_12443491 | 3300017785 | Freshwater Lake | MGTASIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAV |
Ga0181359_10743691 | 3300019784 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNAT |
Ga0207193_15824872 | 3300020048 | Freshwater Lake Sediment | MGTRSIRHIVESTLATYLSAQAGLAGVALLTGDSAATQTLPKAVVLXXXXXXX |
Ga0211733_110068983 | 3300020160 | Freshwater | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQTL |
Ga0211735_112698784 | 3300020162 | Freshwater | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTL |
Ga0211731_109075811 | 3300020205 | Freshwater | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNA |
Ga0211731_114163472 | 3300020205 | Freshwater | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQ |
Ga0211731_117319031 | 3300020205 | Freshwater | MGTASIRHIVESTLATYLSTQTGLTTVTFLTGDNAATQTLPKA |
Ga0208858_10262192 | 3300020524 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSATIQTLPKAVVLC |
Ga0222713_104366991 | 3300021962 | Estuarine Water | MGTKSIRHIVESTLATYLSTQTGLTSVTFLTGDSAATQTLPKAIVLCESA |
Ga0222712_100192398 | 3300021963 | Estuarine Water | MGTKSIRHIVESTLATYLVAQTDLTSIAFLTGDSAATQTLPKAIVLC |
Ga0222712_101868941 | 3300021963 | Estuarine Water | MGTKSIRHIVESTLATYLSTQTGLTTVQFLTGDSAATQTLPKAVVLCDSARA |
Ga0181353_11279592 | 3300022179 | Freshwater Lake | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQTLPKAVV |
Ga0181354_10539333 | 3300022190 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL |
Ga0181354_11192711 | 3300022190 | Freshwater Lake | MGTASIRHIVEYTLATYLSTQTGLTTVSFLTGDNAATQTLPKAV |
Ga0181351_10997931 | 3300022407 | Freshwater Lake | MGTASIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLP |
Ga0181351_12255241 | 3300022407 | Freshwater Lake | MGTASIRHIVESTVATYLSTQTGLTTVSFLTGDNNA |
Ga0212119_10431572 | 3300022543 | Freshwater | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQTLPKAVVLCESARA |
Ga0244775_110879481 | 3300024346 | Estuarine | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLP |
Ga0244775_115165032 | 3300024346 | Estuarine | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESAR |
Ga0256314_10334184 | 3300025749 | Freshwater | MGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCDSA |
Ga0208644_11032383 | 3300025889 | Aqueous | MGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAV |
Ga0208644_12028021 | 3300025889 | Aqueous | MGTKSIRHIVEATLATYLSTQTDLTTVQFLTGDSAVTQTLPKAVVLCDSA |
Ga0208916_101183931 | 3300025896 | Aqueous | MGTKSIRHIVEATVATYLSTQTDLTTVTFLTGDSAATQTLPKAVVL |
Ga0255066_10033981 | 3300027131 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVV |
Ga0255113_10037931 | 3300027147 | Freshwater | MGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQT |
Ga0208800_10393282 | 3300027193 | Estuarine | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVVLC |
Ga0208554_10235411 | 3300027212 | Estuarine | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCE |
Ga0255117_10024567 | 3300027600 | Freshwater | MGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCDSARP |
Ga0208133_10794241 | 3300027631 | Estuarine | MGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDSNVTQTLP |
Ga0208133_11607682 | 3300027631 | Estuarine | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCE |
Ga0208975_12103341 | 3300027659 | Freshwater Lentic | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL |
Ga0209553_11688031 | 3300027688 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVV |
Ga0209297_10622261 | 3300027733 | Freshwater Lake | MGTRSIRHVVEATLATYLSTQTGLTTVQFLTGDSNVTQTLPKAV |
Ga0209297_12636011 | 3300027733 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTDLTTITFLTGDSAATQTLPKAV |
Ga0209190_10298771 | 3300027736 | Freshwater Lake | MGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQT |
Ga0209444_101087182 | 3300027756 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLP |
Ga0209134_102509812 | 3300027764 | Freshwater Lake | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNN |
Ga0209107_100787151 | 3300027797 | Freshwater And Sediment | MGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLP |
Ga0209107_101318393 | 3300027797 | Freshwater And Sediment | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSAR |
Ga0209107_101569363 | 3300027797 | Freshwater And Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDSAAT |
Ga0209354_100926241 | 3300027808 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDR |
Ga0209354_101564552 | 3300027808 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCESARA |
Ga0209354_102854041 | 3300027808 | Freshwater Lake | MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNSAIQ |
Ga0209230_104679801 | 3300027836 | Freshwater And Sediment | MGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNN |
Ga0209253_103581411 | 3300027900 | Freshwater Lake Sediment | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAAT |
Ga0209253_108749931 | 3300027900 | Freshwater Lake Sediment | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTL |
Ga0315293_104025791 | 3300031746 | Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPK |
Ga0315293_108646461 | 3300031746 | Sediment | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLP |
Ga0315288_104003221 | 3300031772 | Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL |
Ga0315909_101242544 | 3300031857 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSSATQ |
Ga0315294_103856641 | 3300031952 | Sediment | MGTLSIRHIVESTVATYLSTQTGLTTVTFLTGDNAAIQT |
Ga0315294_105534782 | 3300031952 | Sediment | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNA |
Ga0315278_113003551 | 3300031997 | Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLP |
Ga0315274_105667273 | 3300031999 | Sediment | MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARP |
Ga0315906_101632161 | 3300032050 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSS |
Ga0315284_106845991 | 3300032053 | Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCE |
Ga0315268_111421332 | 3300032173 | Sediment | MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVV |
Ga0334722_113324702 | 3300033233 | Sediment | MGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNA |
Ga0335023_0189149_1025_1156 | 3300034050 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAAIQTLPKAV |
Ga0335023_0473399_3_128 | 3300034050 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSATIQTLPK |
Ga0334995_0459554_663_776 | 3300034062 | Freshwater | MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQT |
Ga0335028_0502875_3_128 | 3300034071 | Freshwater | MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPK |
Ga0335010_0313391_3_107 | 3300034092 | Freshwater | MGTKSIRHICESTLATYLSTQTGLTSVAFLTGDSA |
Ga0335065_0049372_3_134 | 3300034200 | Freshwater | MGTKSIRHICESTLATYLSTQTGLTTVAFLTGDSAATQTLPKAV |
Ga0335065_0811930_3_107 | 3300034200 | Freshwater | MPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAA |
⦗Top⦘ |