NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F077036

Metagenome / Metatranscriptome Family F077036

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F077036
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 43 residues
Representative Sequence MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPK
Number of Associated Samples 77
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.98 %
% of genes near scaffold ends (potentially truncated) 99.15 %
% of genes from short scaffolds (< 2000 bps) 88.89 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (59.829 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(34.188 % of family members)
Environment Ontology (ENVO) Unclassified
(54.701 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(64.103 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1JGI25908J49247_100348183
2JGI25909J50240_10239061
3JGI25909J50240_10434392
4Ga0049081_102438021
5Ga0079957_10228697
6Ga0070749_101817551
7Ga0070749_101834201
8Ga0075464_108861671
9Ga0075472_101683712
10Ga0075458_100312191
11Ga0102828_10354302
12Ga0102865_10485033
13Ga0114363_11604451
14Ga0114981_101401521
15Ga0114966_107874152
16Ga0105102_102739792
17Ga0114969_100624151
18Ga0133913_117239103
19Ga0133913_128395653
20Ga0139557_10218042
21Ga0139556_10686671
22Ga0177922_102131082
23Ga0177922_102990222
24Ga0177922_103754281
25Ga0177922_103903762
26Ga0177922_110174781
27Ga0177922_110912721
28Ga0181347_10414731
29Ga0181347_11207192
30Ga0181362_10242401
31Ga0181365_10211093
32Ga0181365_10253133
33Ga0181365_10386711
34Ga0181344_10321741
35Ga0181343_12027252
36Ga0181358_10447501
37Ga0181358_11594192
38Ga0181358_11791581
39Ga0181357_11251402
40Ga0181357_12822231
41Ga0181357_12970441
42Ga0181349_11641072
43Ga0181349_12300561
44Ga0181349_12579021
45Ga0181346_10233441
46Ga0181348_11492962
47Ga0181348_11847991
48Ga0181348_12563911
49Ga0181355_11018291
50Ga0181355_11214452
51Ga0181355_12045011
52Ga0181355_12443491
53Ga0181359_10743691
54Ga0207193_15824872
55Ga0211733_110068983
56Ga0211735_112698784
57Ga0211731_109075811
58Ga0211731_114163472
59Ga0211731_117319031
60Ga0208858_10262192
61Ga0222713_104366991
62Ga0222712_100192398
63Ga0222712_101868941
64Ga0181353_11279592
65Ga0181354_10539333
66Ga0181354_11192711
67Ga0181351_10997931
68Ga0181351_12255241
69Ga0212119_10431572
70Ga0244775_110879481
71Ga0244775_115165032
72Ga0256314_10334184
73Ga0208644_11032383
74Ga0208644_12028021
75Ga0208916_101183931
76Ga0255066_10033981
77Ga0255113_10037931
78Ga0208800_10393282
79Ga0208554_10235411
80Ga0255117_10024567
81Ga0208133_10794241
82Ga0208133_11607682
83Ga0208975_12103341
84Ga0209553_11688031
85Ga0209297_10622261
86Ga0209297_12636011
87Ga0209190_10298771
88Ga0209444_101087182
89Ga0209134_102509812
90Ga0209107_100787151
91Ga0209107_101318393
92Ga0209107_101569363
93Ga0209354_100926241
94Ga0209354_101564552
95Ga0209354_102854041
96Ga0209230_104679801
97Ga0209253_103581411
98Ga0209253_108749931
99Ga0315293_104025791
100Ga0315293_108646461
101Ga0315288_104003221
102Ga0315909_101242544
103Ga0315294_103856641
104Ga0315294_105534782
105Ga0315278_113003551
106Ga0315274_105667273
107Ga0315906_101632161
108Ga0315284_106845991
109Ga0315268_111421332
110Ga0334722_113324702
111Ga0335023_0189149_1025_1156
112Ga0335023_0473399_3_128
113Ga0334995_0459554_663_776
114Ga0335028_0502875_3_128
115Ga0335010_0313391_3_107
116Ga0335065_0049372_3_134
117Ga0335065_0811930_3_107
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.95%    β-sheet: 11.90%    Coil/Unstructured: 57.14%
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510152025303540MGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
65.8%34.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater And Sediment
Freshwater Lake Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Lake
Sediment
Freshwater Lake Sediment
Freshwater
Freshwater
Freshwater
Freshwater
Aqueous
Estuarine
Estuarine
Estuarine Water
34.2%6.0%6.8%10.3%8.5%3.4%6.8%3.4%3.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25908J49247_1003481833300003277Freshwater LakeMGTRSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEA
JGI25909J50240_102390613300003393Freshwater LakeMGTRSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVV
JGI25909J50240_104343923300003393Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKA
Ga0049081_1024380213300005581Freshwater LenticMGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPK
Ga0079957_102286973300005805LakeMGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQT
Ga0070749_1018175513300006802AqueousMGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAVTQTLPKAVV
Ga0070749_1018342013300006802AqueousMGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAVTQ
Ga0075464_1088616713300006805AqueousMGTKSIRHIVESTVATYLSTQTDLTTVTFLTGDSA
Ga0075472_1016837123300006917AqueousMGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPK
Ga0075458_1003121913300007363AqueousMGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAATQT
Ga0102828_103543023300007559EstuarineMPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLP
Ga0102865_104850333300007639EstuarineMPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCD
Ga0114363_116044513300008266Freshwater, PlanktonMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSAR
Ga0114981_1014015213300009160Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVTFLTGDSAATQTLPKAVV
Ga0114966_1078741523300009161Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTL
Ga0105102_1027397923300009165Freshwater SedimentMGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAA
Ga0114969_1006241513300009181Freshwater LakeMGAKSIRHIIESTVATYLATQTDLTTVTFLTGDSAATQTLPKAVVLCES
Ga0133913_1172391033300010885Freshwater LakeMGTASIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCES
Ga0133913_1283956533300010885Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLP
Ga0139557_102180423300011010FreshwaterMGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAARAP
Ga0139556_106866713300011011FreshwaterMGTRSIRHIVEATVATYLSTQTGLTAVTFLTGDNAATQTLPKA
Ga0177922_1021310823300013372FreshwaterMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLPKAVVLCDSA
Ga0177922_1029902223300013372FreshwaterMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNA
Ga0177922_1037542813300013372FreshwaterMGTKSIRHICESTLATYLSTQTGLTTVSFLTGDNAATQTLPKA
Ga0177922_1039037623300013372FreshwaterMGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQTLPKAVVLCDSA
Ga0177922_1101747813300013372FreshwaterMGTKSIRHIVESTLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSAR
Ga0177922_1109127213300013372FreshwaterMGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKA
Ga0181347_104147313300017722Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTAVTFLTGDNAAIQTLPKAVVLCD
Ga0181347_112071923300017722Freshwater LakeMGTKSIRHIVESTVATYLSTQTNLTTVSFLTGDNNATQTLPKAVVLC
Ga0181362_102424013300017723Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCD
Ga0181365_102110933300017736Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAI
Ga0181365_102531333300017736Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAA
Ga0181365_103867113300017736Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCEAARAPSD
Ga0181344_103217413300017754Freshwater LakeMGTKSIRHIVEATLATYLSTQTGLTAVTFLTGDSAATQT
Ga0181343_120272523300017766Freshwater LakeMGTKSIRHIVESTLATYLAAQTDLTTIAFLTGDSAATQTLPKA
Ga0181358_104475013300017774Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNSAIQTL
Ga0181358_115941923300017774Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCE
Ga0181358_117915813300017774Freshwater LakeMGTASIRHIVEYTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARP
Ga0181357_112514023300017777Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQT
Ga0181357_128222313300017777Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAVV
Ga0181357_129704413300017777Freshwater LakeMGTKSIRHIVESTVATYLSTQTNLTTVSFLTGDNNATQTLPKAVVLCEAARAP
Ga0181349_116410723300017778Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQT
Ga0181349_123005613300017778Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNN
Ga0181349_125790213300017778Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQT
Ga0181346_102334413300017780Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQTLPKAVVLCEAARAP
Ga0181348_114929623300017784Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPK
Ga0181348_118479913300017784Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSA
Ga0181348_125639113300017784Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVV
Ga0181355_110182913300017785Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGNNNATQTLPK
Ga0181355_112144523300017785Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVSFLTGDNNATQ
Ga0181355_120450113300017785Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTL
Ga0181355_124434913300017785Freshwater LakeMGTASIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLPKAV
Ga0181359_107436913300019784Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNNAT
Ga0207193_158248723300020048Freshwater Lake SedimentMGTRSIRHIVESTLATYLSAQAGLAGVALLTGDSAATQTLPKAVVLXXXXXXX
Ga0211733_1100689833300020160FreshwaterMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQTL
Ga0211735_1126987843300020162FreshwaterMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTL
Ga0211731_1090758113300020205FreshwaterMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNA
Ga0211731_1141634723300020205FreshwaterMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQ
Ga0211731_1173190313300020205FreshwaterMGTASIRHIVESTLATYLSTQTGLTTVTFLTGDNAATQTLPKA
Ga0208858_102621923300020524FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSATIQTLPKAVVLC
Ga0222713_1043669913300021962Estuarine WaterMGTKSIRHIVESTLATYLSTQTGLTSVTFLTGDSAATQTLPKAIVLCESA
Ga0222712_1001923983300021963Estuarine WaterMGTKSIRHIVESTLATYLVAQTDLTSIAFLTGDSAATQTLPKAIVLC
Ga0222712_1018689413300021963Estuarine WaterMGTKSIRHIVESTLATYLSTQTGLTTVQFLTGDSAATQTLPKAVVLCDSARA
Ga0181353_112795923300022179Freshwater LakeMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAAIQTLPKAVV
Ga0181354_105393333300022190Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL
Ga0181354_111927113300022190Freshwater LakeMGTASIRHIVEYTLATYLSTQTGLTTVSFLTGDNAATQTLPKAV
Ga0181351_109979313300022407Freshwater LakeMGTASIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLP
Ga0181351_122552413300022407Freshwater LakeMGTASIRHIVESTVATYLSTQTGLTTVSFLTGDNNA
Ga0212119_104315723300022543FreshwaterMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNAATQTLPKAVVLCESARA
Ga0244775_1108794813300024346EstuarineMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLP
Ga0244775_1151650323300024346EstuarineMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESAR
Ga0256314_103341843300025749FreshwaterMGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCDSA
Ga0208644_110323833300025889AqueousMGTKSIRHIVEATLASYLSTQTDLTTVQFLTGDSAV
Ga0208644_120280213300025889AqueousMGTKSIRHIVEATLATYLSTQTDLTTVQFLTGDSAVTQTLPKAVVLCDSA
Ga0208916_1011839313300025896AqueousMGTKSIRHIVEATVATYLSTQTDLTTVTFLTGDSAATQTLPKAVVL
Ga0255066_100339813300027131FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVV
Ga0255113_100379313300027147FreshwaterMGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQT
Ga0208800_103932823300027193EstuarineMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPKAVVLC
Ga0208554_102354113300027212EstuarineMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCE
Ga0255117_100245673300027600FreshwaterMGTKSIRHIVESTLATYLSTQTGLTTVSFLTGDSAATQTLPKAVVLCDSARP
Ga0208133_107942413300027631EstuarineMGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDSNVTQTLP
Ga0208133_116076823300027631EstuarineMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCE
Ga0208975_121033413300027659Freshwater LenticMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL
Ga0209553_116880313300027688Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVV
Ga0209297_106222613300027733Freshwater LakeMGTRSIRHVVEATLATYLSTQTGLTTVQFLTGDSNVTQTLPKAV
Ga0209297_126360113300027733Freshwater LakeMGTKSIRHIVESTVATYLSTQTDLTTITFLTGDSAATQTLPKAV
Ga0209190_102987713300027736Freshwater LakeMGTASIRHIVEATVATYLSTQTGLTTVTFLTGDNNAIQT
Ga0209444_1010871823300027756Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNNATQTLP
Ga0209134_1025098123300027764Freshwater LakeMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNN
Ga0209107_1007871513300027797Freshwater And SedimentMGTASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLP
Ga0209107_1013183933300027797Freshwater And SedimentMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDSAR
Ga0209107_1015693633300027797Freshwater And SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDSAAT
Ga0209354_1009262413300027808Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNAAIQTLPKAVVLCDR
Ga0209354_1015645523300027808Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCESARA
Ga0209354_1028540413300027808Freshwater LakeMGTKSIRHICESTLATYLSTQTGLTTVTFLTGDNSAIQ
Ga0209230_1046798013300027836Freshwater And SedimentMGTKSIRHIVESTVATYLSTQTGLTTVSFLTGDNN
Ga0209253_1035814113300027900Freshwater Lake SedimentMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAAT
Ga0209253_1087499313300027900Freshwater Lake SedimentMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTL
Ga0315293_1040257913300031746SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPK
Ga0315293_1086464613300031746SedimentMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSAATQTLP
Ga0315288_1040032213300031772SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVL
Ga0315909_1012425443300031857FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSSATQ
Ga0315294_1038566413300031952SedimentMGTLSIRHIVESTVATYLSTQTGLTTVTFLTGDNAAIQT
Ga0315294_1055347823300031952SedimentMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNA
Ga0315278_1130035513300031997SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLP
Ga0315274_1056672733300031999SedimentMPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCDSARP
Ga0315906_1016321613300032050FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSS
Ga0315284_1068459913300032053SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCE
Ga0315268_1114213323300032173SedimentMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVV
Ga0334722_1133247023300033233SedimentMGTKSIRHIVEATVATYLSTQTGLTTVTFLTGDNNA
Ga0335023_0189149_1025_11563300034050FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAAIQTLPKAV
Ga0335023_0473399_3_1283300034050FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSATIQTLPK
Ga0334995_0459554_663_7763300034062FreshwaterMPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAATQT
Ga0335028_0502875_3_1283300034071FreshwaterMGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDSAATQTLPK
Ga0335010_0313391_3_1073300034092FreshwaterMGTKSIRHICESTLATYLSTQTGLTSVAFLTGDSA
Ga0335065_0049372_3_1343300034200FreshwaterMGTKSIRHICESTLATYLSTQTGLTTVAFLTGDSAATQTLPKAV
Ga0335065_0811930_3_1073300034200FreshwaterMPASIRHIVESTLATYLSTQTGLTTVSFLTGDNAA


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