Metagenome / Metatranscriptome Family F076996

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076996
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	62 residues
Representative Sequence	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHASR
Number of Associated Samples	83
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.52 %
% of genes near scaffold ends (potentially truncated)	41.88 %
% of genes from short scaffolds (< 2000 bps)	82.05 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (90.598 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.367 % of family members)
Environment Ontology (ENVO)	Unclassified (24.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (31.624 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.48% β-sheet: 23.08% Coil/Unstructured: 60.44%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF02355	SecD_SecF	54.70
PF13432	TPR_16	12.82
PF07549	Sec_GG	8.55
PF13174	TPR_6	4.27
PF13359	DDE_Tnp_4	0.85
PF13428	TPR_14	0.85
PF00171	Aldedh	0.85
PF01106	NifU	0.85
PF14559	TPR_19	0.85
PF00037	Fer4	0.85
PF00543	P-II	0.85
PF13424	TPR_12	0.85
PF02699	YajC	0.85
PF01288	HPPK	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	63.25
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	63.25
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.85
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.85
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	0.85
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.85
COG1862	Protein translocase subunit YajC	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.60 %
Unclassified	root	N/A	9.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.60 %
Unclassified	root	N/A	9.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.60 %
Unclassified	root	N/A	9.40 %

Name	Rank	Taxonomy	Distribution
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	77.78 %
Unclassified	root	N/A	9.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
unclassified Desulfuromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas	0.85 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	77.78 %
Unclassified	root	N/A	9.40 %
Desulfuromonas sp. DDH964	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. DDH964	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2177915	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300000550\|F24TB_10788983	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	731	Open in IMG/M
3300003890\|Ga0063162_1003207	All Organisms → cellular organisms → Bacteria	56427	Open in IMG/M
3300004463\|Ga0063356_105198180	Not Available	559	Open in IMG/M
3300005073\|Ga0071347_1029701	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1195	Open in IMG/M
3300005981\|Ga0081538_10000823	All Organisms → cellular organisms → Bacteria	33659	Open in IMG/M
3300005981\|Ga0081538_10015741	All Organisms → cellular organisms → Bacteria	5838	Open in IMG/M
3300005981\|Ga0081538_10025885	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4122	Open in IMG/M
3300005981\|Ga0081538_10091083	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1576	Open in IMG/M
3300005981\|Ga0081538_10285663	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	611	Open in IMG/M
3300006844\|Ga0075428_100541792	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1244	Open in IMG/M
3300006845\|Ga0075421_100092420	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3810	Open in IMG/M
3300006845\|Ga0075421_100356835	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1765	Open in IMG/M
3300006845\|Ga0075421_100437604	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1564	Open in IMG/M
3300006845\|Ga0075421_101140332	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	873	Open in IMG/M
3300006853\|Ga0075420_101433786	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	592	Open in IMG/M
3300006880\|Ga0075429_101154568	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	676	Open in IMG/M
3300006918\|Ga0079216_10661017	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	735	Open in IMG/M
3300007004\|Ga0079218_12510442	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	609	Open in IMG/M
3300007790\|Ga0105679_10690783	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1391	Open in IMG/M
3300009081\|Ga0105098_10018012	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2677	Open in IMG/M
3300009137\|Ga0066709_101697366	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	896	Open in IMG/M
3300009157\|Ga0105092_10389031	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	793	Open in IMG/M
3300009168\|Ga0105104_10360913	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	804	Open in IMG/M
3300009444\|Ga0114945_10182361	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1213	Open in IMG/M
3300009444\|Ga0114945_10195265	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1173	Open in IMG/M
3300009444\|Ga0114945_10572698	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	683	Open in IMG/M
3300009691\|Ga0114944_1146255	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	925	Open in IMG/M
3300010043\|Ga0126380_11953301	Not Available	535	Open in IMG/M
3300010046\|Ga0126384_10026822	All Organisms → cellular organisms → Bacteria	3781	Open in IMG/M
3300010046\|Ga0126384_10817304	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	836	Open in IMG/M
3300010047\|Ga0126382_12473674	Not Available	506	Open in IMG/M
3300010140\|Ga0127456_1117709	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	649	Open in IMG/M
3300010147\|Ga0126319_1364078	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	643	Open in IMG/M
3300010362\|Ga0126377_10115274	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2474	Open in IMG/M
3300010362\|Ga0126377_10496277	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1251	Open in IMG/M
3300010398\|Ga0126383_11409008	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	787	Open in IMG/M
3300012199\|Ga0137383_10441534	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	953	Open in IMG/M
3300012204\|Ga0137374_10222514	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1606	Open in IMG/M
3300012208\|Ga0137376_11308548	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	615	Open in IMG/M
3300012210\|Ga0137378_11321346	Not Available	636	Open in IMG/M
3300012211\|Ga0137377_11848079	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	522	Open in IMG/M
3300012212\|Ga0150985_108440672	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	865	Open in IMG/M
3300012350\|Ga0137372_10374809	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1084	Open in IMG/M
3300012355\|Ga0137369_10439379	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	933	Open in IMG/M
3300012469\|Ga0150984_103609318	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	574	Open in IMG/M
3300012685\|Ga0137397_11253902	Not Available	530	Open in IMG/M
3300012929\|Ga0137404_10032262	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3883	Open in IMG/M
3300015245\|Ga0137409_10902139	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	720	Open in IMG/M
3300017997\|Ga0184610_1022830	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300018053\|Ga0184626_10287890	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	683	Open in IMG/M
3300018056\|Ga0184623_10166900	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1016	Open in IMG/M
3300018056\|Ga0184623_10404380	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	600	Open in IMG/M
3300018063\|Ga0184637_10076712	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2049	Open in IMG/M
3300018076\|Ga0184609_10002311	All Organisms → cellular organisms → Bacteria	6242	Open in IMG/M
3300018077\|Ga0184633_10361405	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	731	Open in IMG/M
3300018078\|Ga0184612_10016054	All Organisms → cellular organisms → Bacteria	3821	Open in IMG/M
3300018078\|Ga0184612_10136765	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1282	Open in IMG/M
3300018082\|Ga0184639_10143299	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1269	Open in IMG/M
3300018422\|Ga0190265_10429637	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1424	Open in IMG/M
3300018422\|Ga0190265_13762643	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	506	Open in IMG/M
3300018465\|Ga0190269_10351390	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	887	Open in IMG/M
3300018466\|Ga0190268_10014104	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2378	Open in IMG/M
3300018469\|Ga0190270_12936294	Not Available	539	Open in IMG/M
3300019229\|Ga0180116_1199988	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	539	Open in IMG/M
3300019233\|Ga0184645_1349127	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	708	Open in IMG/M
3300019249\|Ga0184648_1440834	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	777	Open in IMG/M
3300019254\|Ga0184641_1150017	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	584	Open in IMG/M
3300019259\|Ga0184646_1198201	All Organisms → cellular organisms → Bacteria	3951	Open in IMG/M
3300019259\|Ga0184646_1254558	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300019259\|Ga0184646_1463481	All Organisms → cellular organisms → Bacteria	3519	Open in IMG/M
3300019259\|Ga0184646_1595462	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	598	Open in IMG/M
3300019789\|Ga0137408_1264990	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2761	Open in IMG/M
3300020170\|Ga0179594_10027455	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1787	Open in IMG/M
3300020170\|Ga0179594_10124066	Not Available	942	Open in IMG/M
3300021073\|Ga0210378_10119538	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1023	Open in IMG/M
3300022195\|Ga0222625_1119432	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	533	Open in IMG/M
3300022195\|Ga0222625_1232635	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1192	Open in IMG/M
3300022195\|Ga0222625_1336719	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	770	Open in IMG/M
3300022563\|Ga0212128_10026778	All Organisms → cellular organisms → Bacteria	3715	Open in IMG/M
3300022563\|Ga0212128_10090374	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1978	Open in IMG/M
3300022563\|Ga0212128_10168811	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1404	Open in IMG/M
3300022563\|Ga0212128_10269326	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1074	Open in IMG/M
3300022563\|Ga0212128_10359300	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	906	Open in IMG/M
3300025149\|Ga0209827_10490667	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	554	Open in IMG/M
3300025149\|Ga0209827_11202804	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	642	Open in IMG/M
3300025157\|Ga0209399_10368440	Not Available	560	Open in IMG/M
3300025310\|Ga0209172_10004853	All Organisms → cellular organisms → Bacteria	17224	Open in IMG/M
3300027691\|Ga0209485_1122460	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	753	Open in IMG/M
3300027909\|Ga0209382_10143874	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2767	Open in IMG/M
3300027909\|Ga0209382_10157370	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300027909\|Ga0209382_11455431	Not Available	685	Open in IMG/M
3300027909\|Ga0209382_11833755	Not Available	589	Open in IMG/M
3300027956\|Ga0209820_1242346	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	505	Open in IMG/M
3300030006\|Ga0299907_10794928	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	714	Open in IMG/M
3300030600\|Ga0247659_1142025	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	584	Open in IMG/M
3300030619\|Ga0268386_10403264	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	961	Open in IMG/M
3300030619\|Ga0268386_10553218	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	777	Open in IMG/M
3300030620\|Ga0302046_10280621	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1370	Open in IMG/M
3300030829\|Ga0308203_1011996	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1019	Open in IMG/M
3300030829\|Ga0308203_1013157	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	989	Open in IMG/M
3300030829\|Ga0308203_1039895	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	683	Open in IMG/M
3300030830\|Ga0308205_1035468	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	625	Open in IMG/M
3300030831\|Ga0308152_110910	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	569	Open in IMG/M
3300030902\|Ga0308202_1025731	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	958	Open in IMG/M
3300030902\|Ga0308202_1060562	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	714	Open in IMG/M
3300030903\|Ga0308206_1018480	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1149	Open in IMG/M
3300030903\|Ga0308206_1109664	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	627	Open in IMG/M
3300030990\|Ga0308178_1025189	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	977	Open in IMG/M
3300031054\|Ga0102746_11054862	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	755	Open in IMG/M
3300031092\|Ga0308204_10006443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. DDH964	1926	Open in IMG/M
3300031092\|Ga0308204_10099581	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	799	Open in IMG/M
3300031114\|Ga0308187_10077974	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	982	Open in IMG/M
3300031421\|Ga0308194_10311735	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	548	Open in IMG/M
3300031548\|Ga0307408_101724157	Not Available	597	Open in IMG/M
3300031965\|Ga0326597_11112302	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	788	Open in IMG/M
3300034643\|Ga0370545_161577	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.91%
Host-Associated	Host-Associated	17.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.01%
Aquatic	Environmental → Aquatic	35.90%
Plants	Host-Associated → Plants	17.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.01%
Freshwater	Environmental → Aquatic → Freshwater	14.53%
Thermal Springs	Environmental → Aquatic → Thermal Springs	12.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.11%
Sediment	Environmental → Aquatic → Sediment	8.55%
Roots	Host-Associated → Plants → Roots	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.30%
Sediment	Environmental → Aquatic → Freshwater → Sediment	13.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	11.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.55%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.27%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.85%
Loam	Environmental → Terrestrial → Soil → Loam	0.85%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	13.68%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.55%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	4.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Alkaline	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline	0.85%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.37%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.11%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	10.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	10.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.40%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	4.27%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.71%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Hot Spring Sediments	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments	0.85%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Sediment	0.85%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300003890	Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005073	Cellulose enrichment metagenome from thermal spring in Terrace, British Columbia, Canada	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025149	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes)	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030600	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_21779152	3300000033	Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLQDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR*
F24TB_107889832	3300000550	Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR*
Ga0063162_100320710	3300003890	Hot Spring Sediments	MKIDKILAVYKSSPLLLVVESEEGKLCELSFKDLKDAGHNFSDAAWKSLVEDYQIFDCQHASR*
Ga0063356_1051981801	3300004463	Arabidopsis Thaliana Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLSELALKDLKTAGHIFSDAAWKSLVEDYGIFNSQHASR*
Ga0071347_10297011	3300005073	Sediment	MKIDRGLAVYKSSPLLLVVESEEGKLCEVSFKDLKDAGHNFSDAAWKSLVEDYQLFDCQPASR*
Ga0081538_1000082324	3300005981	Tabebuia Heterophylla Rhizosphere	MKIDKVLAVYKTSPLLLVVESDEGKLFEISLKDLKAAGHIFNDIAWKSLVEDYRIFNSQHASR*
Ga0081538_100157413	3300005981	Tabebuia Heterophylla Rhizosphere	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKAAGHIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0081538_100258854	3300005981	Tabebuia Heterophylla Rhizosphere	MKIDKVLAVYNTSPLLLVVESDEGKLFELPLKDLKSAGHIFGEAAWKSLVEDYRIFNSQHASR*
Ga0081538_100910832	3300005981	Tabebuia Heterophylla Rhizosphere	MIIDKVLAVYNMSPLLLVVESDEGKLFEVSLKDLKTAGHIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0081538_102856632	3300005981	Tabebuia Heterophylla Rhizosphere	MKIDKVLAVYKTSPLLLVVESEEGKLFELSFKDLKASGYVFSDAAWKSLVEDYRIFTCQPAPR*
Ga0075428_1005417922	3300006844	Populus Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLCELSFQDLKAAGHIFSDAAWKSLVEDYGIFNSQHASR*
Ga0075421_1000924203	3300006845	Populus Rhizosphere	MKIDKVLAVYKTAPLLLVVESEEGKLFELSLKDLKLAGYIFSDAAWKSLVEDFRIFSCQHVSR*
Ga0075421_1003568352	3300006845	Populus Rhizosphere	MQIEKVLAVYKTSPLVLVVESDEGKLCELSLKELKAAGHIFSDTAWKSLVEDFGIFNSQHASR*
Ga0075421_1004376042	3300006845	Populus Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLCELSFKDLKAAGHIFSDAAWKSLVEDYGIFNSQHASR*
Ga0075421_1011403322	3300006845	Populus Rhizosphere	MQIDKVLAVYKTSPLILVVESDEGKLCELPLKDLKAAGHIFSDTAWKSLVEGFGIFNSQHASR*
Ga0075420_1014337861	3300006853	Populus Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDTAWKSLVEGFGIFNSQHASR*
Ga0075429_1011545681	3300006880	Populus Rhizosphere	MKIDKVLAVYKTAPLLLVVESEEGKLFELSLKDLKLAGYIFSDAAWKSLVEDF
Ga0079216_106610172	3300006918	Agricultural Soil	SPLLLVVESEEGKLFELSLRDLKASGYVFSDAAWKSLVEDYRIFTCQPASR*
Ga0079218_125104421	3300007004	Agricultural Soil	KIDKVLAVYKTSPLLLVVESEEGKLFELSLRDLKASGYVFSDAAWKSLVEDYRIFTCQPASR*
Ga0105679_106907832	3300007790	Soil	MKIDKVLAVYNISPLLLVVESEEGKLFELSLKDLKASGHNFSDAAWKSLVEDYRIFSAQHASR*
Ga0105098_100180123	3300009081	Freshwater Sediment	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0066709_1016973662	3300009137	Grasslands Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQH
Ga0105092_103890312	3300009157	Freshwater Sediment	MKIDKVLAVYNMSPLLLVVESDDGKLFELSLKDLKTAGHILSEAAWKSLVEDYRIFNSQHASR*
Ga0105104_103609132	3300009168	Freshwater Sediment	MIIEKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVE
Ga0114945_101823612	3300009444	Thermal Springs	MKIEKVLAVYNMSPLLLVVESEEGKLFELSLKELKGAGYTFSDAAWKSLVEDYRIFTCQHASR*
Ga0114945_101952652	3300009444	Thermal Springs	MKIDKVLAVYNLAPLLLVVESDDGKLFELSLKELKAAGHTFSEVAWKSLVEDYRIFNCQHASR*
Ga0114945_105726981	3300009444	Thermal Springs	MKIDKVLAVYNTSPLLLVVESEEGKLFDLSLTELKSAGHTFSDDAWKRLVEDYRIFNCQHASH*
Ga0114944_11462552	3300009691	Thermal Springs	YNMSPLLLVVESEEGKLFELSLKELKGAGYTFSDAAWKSLVEDYRIFTCQHASR*
Ga0126380_119533011	3300010043	Tropical Forest Soil	MIIDKVLAVYNIAPLLLVVESDEGKLFELSLKDLKAAGHIFS
Ga0126384_100268221	3300010046	Tropical Forest Soil	MIIDKVLAVYKLSPLLLVVESDEGKVFELALKDLKTAGHIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0126384_108173042	3300010046	Tropical Forest Soil	MRIDKVLAVYSISPLLFVVESEEGKLLELSLQELRDAGYIFSDAAWKSLVEDYRIFHCQHASR*
Ga0126382_124736741	3300010047	Tropical Forest Soil	MKINKVLAVYRVSPLLLVVESEEGQLLELPLKELKDAGYNLCDAVWKSLSEEYQIFNCWPAPR*
Ga0127456_11177092	3300010140	Grasslands Soil	PSMIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR*
Ga0126319_13640782	3300010147	Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLRDLKTSGYIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0126377_101152742	3300010362	Tropical Forest Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWRSLVEDYRIFNSQHARR*
Ga0126377_104962772	3300010362	Tropical Forest Soil	KMSKSLIWRFSSMVIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKMAGYIFSDVAWKSLVEDYRIFNSQHAPR*
Ga0126383_114090082	3300010398	Tropical Forest Soil	MRIDKVLAVYSISPLLFVVESEEGKLLELSLQELRDAGYIFSDAAWKSLVEDYRIFHCQYASR*
Ga0137383_104415341	3300012199	Vadose Zone Soil	VLAVYNTSPLLLVVESEEGKLVELSLQELRDAGYIFGDAAWKSLVEDYRIFHCQPASP*
Ga0137374_102225142	3300012204	Vadose Zone Soil	MTIDKVLAVYNTSPLLLVVESAEGKLVELSLQELRDAGYIFSDAAWKSLVDDYRIFHCQHASR*
Ga0137376_113085481	3300012208	Vadose Zone Soil	IDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR*
Ga0137378_113213461	3300012210	Vadose Zone Soil	MKIDKVLAVYNTSPLLLVVESEEGKLVELSLQELRDAGYIFGDAAWKSLV
Ga0137377_118480791	3300012211	Vadose Zone Soil	VYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR*
Ga0150985_1084406721	3300012212	Avena Fatua Rhizosphere	KSLTRRFPSMIIDKVLAVYNLSPLLLVVESDEGKLFELSLKDLKAAGHIFSDVAWKSLVEDYRIFNCQHATR*
Ga0137372_103748091	3300012350	Vadose Zone Soil	MTIDKVLAVYNTSPLLLVVESAEGKLVELSLQELRDAGYIFS
Ga0137369_104393792	3300012355	Vadose Zone Soil	MTIDKVLAVYNTSPLLLVVESAEGKLVELSLQELRDAGYIFSDAARKSLVEDYRIFHCQHASR*
Ga0150984_1036093181	3300012469	Avena Fatua Rhizosphere	SLTRRFPSMIIDKVLAVYNLSPLLLVVESDEGKLFELSLKDLKAAGHIFSDVAWKSLVEDYRIFNCQHATR*
Ga0137397_112539022	3300012685	Vadose Zone Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFN
Ga0137404_100322623	3300012929	Vadose Zone Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDTAWKSLVEDYRIFNSQHAPR*
Ga0137409_109021392	3300015245	Vadose Zone Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLRDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR*
Ga0184610_10228302	3300017997	Groundwater Sediment	MKINKVLAVYNTSPVLLVVESEEATLLELSLKELKGAGHTFSDAVWKSLVEDYRIFSCQHAPR
Ga0184626_102878902	3300018053	Groundwater Sediment	MQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0184623_101669002	3300018056	Groundwater Sediment	MKIDKVLAVYNISPLLLVVESEEGKLFELSLKDLKAGGHNFSDAAWKSLVEDYRIFYAQHASR
Ga0184623_104043802	3300018056	Groundwater Sediment	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDAAWKSLVEDYGIFNSQ
Ga0184637_100767122	3300018063	Groundwater Sediment	MQIDKVLAVYKTSPLVLVVESDEGKLCELSFKDLKAAGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0184609_100023113	3300018076	Groundwater Sediment	MQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0184633_103614052	3300018077	Groundwater Sediment	MKIDRVLAVYKVSPLLLVVESDEGKLFEVSLKGLKNAGYTFSDAAWKSLVEDYRIFNPQPASH
Ga0184612_100160544	3300018078	Groundwater Sediment	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0184612_101367651	3300018078	Groundwater Sediment	MQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSD
Ga0184639_101432992	3300018082	Groundwater Sediment	MKIDRVLAVYKVSPLLLVVESDEGKLFEVSLKGLKNAGYTFS
Ga0190265_104296372	3300018422	Soil	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0190265_137626432	3300018422	Soil	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFHSQHAPR
Ga0190269_103513902	3300018465	Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVENYRIFNSQHAPR
Ga0190268_100141042	3300018466	Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0190270_129362942	3300018469	Soil	MKIDKVLAVYKTAPLLLVVESEEGKLFELSLKDLKLAGYIFSDAAWKSLVEDFRIFSCQHASR
Ga0180116_11999882	3300019229	Groundwater Sediment	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKKAGYIFSDAAWKSLVEDYRIFHSQHAPR
Ga0184645_13491271	3300019233	Groundwater Sediment	LIWRFPSMIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKMAGYIFSDAAWKSLVEDYRIFNSQHARR
Ga0184648_14408342	3300019249	Groundwater Sediment	SPLLLVVESDEGKLFELSLKDLKMAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0184641_11500171	3300019254	Groundwater Sediment	RKHPDWRFHNMQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0184646_11982011	3300019259	Groundwater Sediment	PHMKINKVLAVYNTSPVLLVVESEEATLLELSLKELKGAGHTFSDAVWKSLVEDYRIFSCQHAPR
Ga0184646_12545581	3300019259	Groundwater Sediment	MKINKVLAVYNTSPVLLVAESEEATLLELSLKELKGAGHTFSDAVWKSLVEDYR
Ga0184646_14634811	3300019259	Groundwater Sediment	HATLHRRLADMKIDKVLAVYNISPLLLVVESEEGKLFELSLKDLKAGGHNFSDAAWKSLVEDYRIFYAQHASR
Ga0184646_15954621	3300019259	Groundwater Sediment	IDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHAS
Ga0137408_12649902	3300019789	Vadose Zone Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDTAWKSLVEDYRIFNSQHAPR
Ga0179594_100274552	3300020170	Vadose Zone Soil	MIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDTAWKSLVEDYRIFNSQHAP
Ga0179594_101240662	3300020170	Vadose Zone Soil	MNITKVLAVYIVSPRLLVVESEEGELFELSLKELKNAGHSFSDTVWKSLIE
Ga0210378_101195382	3300021073	Groundwater Sediment	MQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVEDYRIFNSQHASR
Ga0222625_11194322	3300022195	Groundwater Sediment	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDAAWKNLVEDYGIFNSQHASR
Ga0222625_12326352	3300022195	Groundwater Sediment	MQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVE
Ga0222625_13367191	3300022195	Groundwater Sediment	KSLIWRFPSMIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKMAGYIFSDAAWKSLVEDYRIFNSQHARR
Ga0212128_100267782	3300022563	Thermal Springs	MKIDKVLAVYNLAPLLLVVESDDGKLFELSLKELKAAGHTFSEVAWKSLVEDYRIFNCQHASR
Ga0212128_100903742	3300022563	Thermal Springs	MKIEKVLAVYNMSPLLLVVESEEGKLFELSLKELKGAGYTFSDAAWKSLVEDYRIFTCQHASR
Ga0212128_101688112	3300022563	Thermal Springs	MKIDKVLALYKTSPLWLVVESEEGKLFELSLTELKAAGHTFSDPAWKSLVGDYRIFDCALAPR
Ga0212128_102693262	3300022563	Thermal Springs	MNIDRVLAVYKVSPLLLVVESEEGELLELSFVDLKRAGYRFSDTAWKSLVEDYRIFTCQPASR
Ga0212128_103593002	3300022563	Thermal Springs	MKIDKVLAVYNTSPLLLVVESEEGKLFDLSLTELKSAGHTFSDDAWKRLVEDYRIFNCQHASH
Ga0209827_104906672	3300025149	Thermal Springs	YNMSPLLLVVESEEGKLFELSLKELKGAGYTFSDAAWKSLVEDYRIFTCQHASR
Ga0209827_112028041	3300025149	Thermal Springs	YYTKGDNPSIGWRLVPMKIERVLAVYKVSPLLLVVESEEGELLELSFVDLKKAGYRFSDAAWKSLVEDYRIFTCQPASR
Ga0209399_103684401	3300025157	Thermal Springs	MKIEKVLAVYNMSPLLLVVESEEGKLFELSLKELKGAGYTFSDAAWKSLVEDYRIFNCQHAPR
Ga0209172_1000485312	3300025310	Hot Spring Sediment	MKIDKILAVYKSSPLLLVVESEEGKLCELSFKDLKDAGHNFSDAAWKSLVEDYQIFDCQHASR
Ga0209485_11224601	3300027691	Agricultural Soil	AVYKTSPLLLVVESEEGKLFELSLRDLKASGYVFSDAAWKSLVEDYRIFTCQPASR
Ga0209382_101438742	3300027909	Populus Rhizosphere	MQIEKVLAVYKTSPLVLVVESDEGKLCELSLKELKAAGHIFSDTAWKSLVEDFGIFNSQHASR
Ga0209382_101573702	3300027909	Populus Rhizosphere	MKIDKVLAVYKTAPLLLVVESEEGKLFELSLKDLKLAGYIFSDAAWKSLVEDFRIFSCQHVSR
Ga0209382_114554312	3300027909	Populus Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLCELSFKDLKAAGHIFSDTAWKSLVEEYGIFNSQHASR
Ga0209382_118337551	3300027909	Populus Rhizosphere	MQIDKVLAVYKTSPLILVVESDEGKLCELPLKDLKAAGHIFSDTAWKSLVEGFGIFNSQHASR
Ga0209820_12423461	3300027956	Freshwater Sediment	RFPSMIIDKVLAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0299907_107949282	3300030006	Soil	MKIDKVLAVYNTSPLLLVVESDEGQLCEISFKDLKAAGHIFSDTAWKSLVEDYRIFNSQHASR
Ga0247659_11420251	3300030600	Soil	PGMTIDKVLAVYNISPLLLVVESDEGKLCELSLKDLKTAGYIFSDAAWKSLVEDYRIFHSQHAPR
Ga0268386_104032642	3300030619	Soil	MKIDKVLAVYNTSPLILVVESDEGKLFEISFKDLKAAGHIFSDTAWKSLVEDYRIFNSQHASR
Ga0268386_105532181	3300030619	Soil	MTIDKVLAVYKMSPLLLVVESDEGKLFELSLKDLKAAGYIFSEAAWKSLVEDFRIFNSQHAPR
Ga0302046_102806212	3300030620	Soil	MTIDKVLAVYKMSPLLLVVESDEGKLFELSLKDLKAAGYIFSDAAWKSLVEDYRIFHSQHAPR
Ga0308203_10119961	3300030829	Soil	LIWRFPSMIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0308203_10131571	3300030829	Soil	KHPDWRFHNMQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308203_10398951	3300030829	Soil	FPNMQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308205_10354681	3300030830	Soil	AVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0308152_1109101	3300030831	Soil	KHPDWRFPNMQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308202_10257312	3300030902	Soil	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKRLVEDYRIFNSQHAPR
Ga0308202_10605621	3300030902	Soil	LDWRFHNMQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308206_10184801	3300030903	Soil	PDWRFHNMQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308206_11096641	3300030903	Soil	PDRRFPNMQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKAAGHIFSDAAWKSLVEDYGIFNSQPASR
Ga0308178_10251891	3300030990	Soil	LIWRFPSMIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKRLVEDYRIFNSQHAPR
Ga0102746_110548621	3300031054	Soil	LAVYNMSPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0308204_100064431	3300031092	Soil	MLIDKVLAVYNLSPLLLVVESDEGKLFELSFKDLKTAGYIFSDAAWKSLVEDYRIFNSQHAPR
Ga0308204_100995811	3300031092	Soil	PDWRFPNMQIDRVLAVYKTSPLVLVVESDEGKLCELSLKDLKATGHIFSDAAWKSLVEDYGIFNSQHASR
Ga0308187_100779742	3300031114	Soil	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLKDLKTDGHIFGDAAWKSLVEDYGIFNSQHASR
Ga0308194_103117352	3300031421	Soil	ISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKRLVEDYRIFNSQHAPR
Ga0307408_1017241572	3300031548	Rhizosphere	MQIDKVLAVYKTSPLVLVVESDEGKLCELSLRDLKAAGHIFSDAAWKSLVEDYRIFNSQHASR
Ga0326597_111123022	3300031965	Soil	MKIDRVLAVYKVSPLLLVVESEEGKLFEVSLKGLKNAGYTFSDAAWKSLVEDYRIFNPQPASH
Ga0370545_161577_27_218	3300034643	Soil	MIIDKVLAVYNISPLLLVVESDEGKLFELSLKDLKTAGYIFSDAAWKSLVEDYRIFNSQHASR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076996

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences