Metagenome / Metatranscriptome Family F076961

Basic Information
Family ID	F076961
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	42 residues
Representative Sequence	MVEDYIQDKVRRDIIKEISNLELPNEWKPQQVIDYIIRKIDKK
Number of Associated Samples	63
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.36 %
% of genes near scaffold ends (potentially truncated)	29.91 %
% of genes from short scaffolds (< 2000 bps)	63.25 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (57.265 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater (17.949 % of family members)
Environment Ontology (ENVO)	Unclassified (32.479 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (68.376 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1RCM27_10043681 2RCM40_10266407 3RCM26_12561761 4GOS2236_10031915 5GOS2236_10498744 6GOS2236_10541468 7GOS2236_10760492 8Ga0068877_102710016 9Ga0068877_105804062 10Ga0068876_100135253 11Ga0068876_100210132 12Ga0068872_103053213 13Ga0078894_111651523 14Ga0078117_100969511 15Ga0078117_10236919 16Ga0079957_10557493 17Ga0075473_101212742 18Ga0102976_10259886 19Ga0102977_10222552 20Ga0102978_12261698 21Ga0102689_18142581 22Ga0114340_10102928 23Ga0114340_11131663 24Ga0114347_10102469 25Ga0114347_10194592 26Ga0114347_10859731 27Ga0114350_100176718 28Ga0114350_10179562 29Ga0114350_102002015 30Ga0114350_10436552 31Ga0114350_10477559 32Ga0114350_10883252 33Ga0114350_11909432 34Ga0114351_10588178 35Ga0114355_10203879 36Ga0114355_10435931 37Ga0114355_10588611 38Ga0114355_10647581 39Ga0114355_10721186 40Ga0114355_12172733 41Ga0114840_10102531 42Ga0114974_102648582 43Ga0129333_100699422 44Ga0129333_100705483 45Ga0129333_100900002 46Ga0129333_102524342 47Ga0129333_102701542 48Ga0129333_109963691 49Ga0129333_111448552 50Ga0129335_11802435 51Ga0129337_13774271 52Ga0129338_13802481 53Ga0163212_11116871 54Ga0172367_101035939 55Ga0172367_102299802 56Ga0172373_103274372 57Ga0172373_105032432 58Ga0172372_101732621 59Ga0177922_101684983 60Ga0172376_1005833410 61Ga0172376_102632485 62Ga0172376_106747051 63Ga0169931_1001445723 64Ga0169931_1006981810 65Ga0169931_100733091 66Ga0169931_106632382 67Ga0194113_101390982 68Ga0194113_102255502 69Ga0194113_106075742 70Ga0208091_100047612 71Ga0255147_100026629 72Ga0255147_10171412 73Ga0255148_10642892 74Ga0255142_10193252 75Ga0256330_10962142 76Ga0255228_10837222 77Ga0255283_10279976 78Ga0255288_11201531 79Ga0255276_10799752 80Ga0255271_10241971 81Ga0255272_10242314 82Ga0255272_10335651 83Ga0208048_10661451 84Ga0255285_11004451 85Ga0255277_10446732 86Ga0255274_10700502 87Ga0255270_10056482 88Ga0255269_12198922 89Ga0255146_11191091 90Ga0209972_100159583 91Ga0209972_100290383 92Ga0209972_100980216 93Ga0209972_102086061 94Ga0209229_100267575 95Ga0209990_100961482 96Ga0255172_10749493 97Ga0256335_11827251 98Ga0256331_10545151 99Ga0315907_100128406 100Ga0315907_100423884 101Ga0315907_101272802 102Ga0315907_101736462 103Ga0315907_101831274 104Ga0315907_103427425 105Ga0315900_102402614 106Ga0315900_102627947 107Ga0315909_100315849 108Ga0315909_101180832 109Ga0315909_102036851 110Ga0315909_103610552 111Ga0315909_106594333 112Ga0315904_102979703 113Ga0315904_103252272 114Ga0315904_114618282 115Ga0315903_1000904211 116Ga0315903_103368001 117Ga0315903_111568991
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1RCM27_10043681 2RCM26_12561761 3GOS2236_10031915 4Ga0068877_102710016 5Ga0068876_100135253 6Ga0068876_100210132 7Ga0102977_10222552 8Ga0114347_10194592 9Ga0114350_102002015 10Ga0114350_11909432 11Ga0129333_100699422 12Ga0129333_100900002 13Ga0163212_11116871 14Ga0172367_101035939 15Ga0255228_10837222 16Ga0315900_102627947
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0172376_1005833410 2RCM40_10266407 3RCM26_12561761 4GOS2236_10498744 5Ga0068876_100135253 6Ga0068872_103053213 7Ga0078894_111651523 8Ga0079957_10557493 9Ga0102977_10222552 10Ga0102978_12261698 11Ga0114340_11131663 12Ga0114347_10194592 13Ga0114350_11909432 14Ga0114355_12172733 15Ga0114974_102648582 16Ga0129333_100900002 17Ga0129333_102524342 18Ga0129333_102701542 19Ga0172367_101035939 20Ga0172373_105032432 21Ga0177922_101684983 22Ga0169931_1001445723 23Ga0194113_101390982 24Ga0194113_102255502 25Ga0255288_11201531 26Ga0255270_10056482 27Ga0255172_10749493 28Ga0315907_101272802 29Ga0315909_102036851 30Ga0315904_102979703 31Ga0315904_114618282 32Ga0315903_1000904211 33Ga0315903_103368001
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.25% β-sheet: 0.00% Coil/Unstructured: 57.75%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00085	Thioredoxin	4.27
PF00082	Peptidase_S8	4.27
PF02675	AdoMet_dc	3.42
PF01923	Cob_adeno_trans	1.71
PF13578	Methyltransf_24	1.71
PF02511	Thy1	0.85
PF00011	HSP20	0.85
PF02467	Whib	0.85
PF00534	Glycos_transf_1	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	3.42
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	42.74 %
Unclassified	root	N/A	57.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	7.69 %
Unclassified	root	N/A	57.26 %
Viruses	superkingdom	All Organisms → Viruses	35.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Unclassified	root	N/A	57.26 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	30.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.56 %
Unclassified	root	N/A	57.26 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Unclassified	root	N/A	57.26 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	30.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	30.77 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Unclassified	root	N/A	57.26 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.85 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	30.77 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.85 %
Unclassified	root	N/A	57.26 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.85 %
Unclassified	root	N/A	57.26 %
unclassified Methylophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae	1.71 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Methylophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Unclassified	root	N/A	57.26 %
unclassified Rhodanobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter	0.85 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Methylophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.27 %
Rhodanobacter sp. FW510-R10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp. FW510-R10	0.85 %
Unclassified	root	N/A	57.26 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30.77 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013126\|Ga0172367_10103593	All Organisms → Viruses → Predicted Viral	1995	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10327437	Not Available	978	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10503243	Not Available	737	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10058334	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3010	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10263248	Not Available	1051	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10674705	Not Available	561	Open in IMG/M
3300001836\|RCM27_1004368	Not Available	888	Open in IMG/M
3300001839\|RCM40_1026640	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3553	Open in IMG/M
3300001849\|RCM26_1256176	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	576	Open in IMG/M
3300001968\|GOS2236_1003191	Not Available	1700	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.18%
Marine	Environmental → Aquatic → Marine	12.82%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	9.40%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.42%
Lake	Environmental → Aquatic → Freshwater → Lake	37.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	12.82%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.56%
River	Environmental → Aquatic → Freshwater → River	17.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	16.24%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	37.61%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	17.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	16.24%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	11.97%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.40%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.56%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.42%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	17.95%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	16.24%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.97%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.85%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	10.26%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.27%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	5.98%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	17.09%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.85%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	1.71%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.42%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	2.56%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001836	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3a	Environmental	Open in IMG/M
3300001839	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3b	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005758	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM27_10043681	3300001836	Marine Plankton	VDYIQDHIRDSIIKEIKDLELPYEWKPSEVINYIVRMIDKNGQAPR*
RCM40_10266407	3300001839	Marine Plankton	VDYIQDHIRDSIIKEIENLELPYEWKPSEVINYIVRMIDKNGQAPR*
RCM26_12561761	3300001849	Marine Plankton	MVEDYIQDKVRRDIVKEIRNLELPEEWKTQQVIDYIIRKIEIK*
GOS2236_10031915	3300001968	Marine	KVRRDIIKEIGNLELPEEWKPHQVIDYIIRKIDKK*
GOS2236_10498744	3300001968	Marine	MVEEYLTEKVRRDIIKEIGNLELPEEWKPQQVIDYIIRKIDKK*
GOS2236_10541468	3300001968	Marine	VEEYLIEKVRKDIIKEIGNLELPKEWKPQQVIDYIIRKIDKK*
GOS2236_10760492	3300001968	Marine	MVEDYLQEKVRRDIIKDIRNLELPEEWKPQQVIDYIIRKIDKK*
Ga0068877_102710016	3300005525	Freshwater Lake	VEEYLQEKVRRDVIKEISNLELPDEWKPHQVIDYIIRKINKK*
Ga0068877_105804062	3300005525	Freshwater Lake	MVEEYLQEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKIEIK*
Ga0068876_100135253	3300005527	Freshwater Lake	MQDYIDTKVRQDIVNQISNLELPEDWKPQQVIDYIIRKIDKDNVR*
Ga0068876_100210132	3300005527	Freshwater Lake	MVEDYIDTKIRRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKV*
Ga0068872_103053213	3300005528	Freshwater Lake	MVEDYIDTKIRRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKA*
Ga0078894_111651523	3300005662	Freshwater Lake	NNIVEDYIQEKVRRDIVKEIGNLELPDNWKPQQVIDYIIRKIDKK*
Ga0078117_100969511	3300005758	Lake Water	MVEEYLQEKVRRDVIKEISNLELPNEWKPQQVIDYIIRKIDKK*
Ga0078117_10236919	3300005758	Lake Water	MVEDYLQDKVRRDIIKEIRNLELPNEWKTQQVIDYIIRKIDKK*
Ga0079957_10557493	3300005805	Lake	MEDYLDDKVRRDIVKQISNLELPEEWKPYQVIDYIIRKINKK*
Ga0075473_101212742	3300006875	Aqueous	MVEDYIQDKVRRDVIKEIRNLELPNDWKPQQVIDYIIRKIDKE*
Ga0102976_10259886	3300007169	Freshwater Lake	EDYIQDKVRRDIIKEIRNLELPKEWEPQMVIDYIIRKIDKK*
Ga0102977_10222552	3300007171	Freshwater Lake	VEDYIENKVREEIVKELSNLELPYEWKPKEVINFIIRKIQK*
Ga0102978_12261698	3300007177	Freshwater Lake	MVDDYIDQKVRRDIIKEIRNLELPNEWNPQQVIDYIIRKIDKN*
Ga0102689_18142581	3300007304	Freshwater Lake	DTKIRRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKV*
Ga0114340_10102928	3300008107	Freshwater, Plankton	MVEEYLQEKIRRDVIKEISNLEFPNEWNPQQVIDYIIRKIERQ*
Ga0114340_11131663	3300008107	Freshwater, Plankton	MVEEYLQEKVRRDVVKEISNLELPDNWKPQQVIDYIIRKITK*
Ga0114347_10102469	3300008114	Freshwater, Plankton	VEDYIDNSVRRDIIKDISNLELPDDWKPNQVIDYIIRKIDKK*
Ga0114347_10194592	3300008114	Freshwater, Plankton	MLEEYIENKVRQDIIKEINNLELPHEWKPKEVINFIIRKIDKGNVK*
Ga0114347_10859731	3300008114	Freshwater, Plankton	EEYLQEKVRRDVIKEISNLELPDEWKPHQVIDYIIRKINKK*
Ga0114350_100176718	3300008116	Freshwater, Plankton	MVEDYIDIKIRRDIIKQISDLELPEDWKTQQVIDYIIRKIDKDNVR*
Ga0114350_10179562	3300008116	Freshwater, Plankton	VEEYLDEKVRRDVIKEIGNLELPEEWNPQQVIDYIIRKIEIK*
Ga0114350_102002015	3300008116	Freshwater, Plankton	VEDYIDNSVRRDIIKDIRNLELPEDWKPNQVIDYIIRKIDKK*
Ga0114350_10436552	3300008116	Freshwater, Plankton	VEEYLQEKVRRDVIKEISNLELPEEWKPQQVIDYIIRKINRK*
Ga0114350_10477559	3300008116	Freshwater, Plankton	MVEDYIQEKVRRDIVKDILDLELPETWKPQQVIDYIIRKIDKK*
Ga0114350_10883252	3300008116	Freshwater, Plankton	VEEYLDEKVRRDVIKEIGDLELPEEWKPHQVIDYIIRKINRK*
Ga0114350_11909432	3300008116	Freshwater, Plankton	MVEDYIDSKIRRDLAKQIRDLELPPDWRTKDVINYILRI
Ga0114351_10588178	3300008117	Freshwater, Plankton	KVRRDIIKDILNLELPNDWEPHQVIDYIIRKIDKK*
Ga0114355_10203879	3300008120	Freshwater, Plankton	MEDYIDNSVRRDIIKDIRNLELPDDWKPNQVIDYIIGKIDKK*
Ga0114355_10435931	3300008120	Freshwater, Plankton	MVEEYLIEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKIEKK*
Ga0114355_10588611	3300008120	Freshwater, Plankton	VEEYLDEKVRRDVIKEIGDLELPEEWKPQQVIDYIIRKINRK*
Ga0114355_10647581	3300008120	Freshwater, Plankton	RRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKA*
Ga0114355_10721186	3300008120	Freshwater, Plankton	RRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKV*
Ga0114355_12172733	3300008120	Freshwater, Plankton	MVEEYLEQKIRRDIIKEIGNLELPEEWNPQQVIDYIIRKIEIK*
Ga0114840_10102531	3300008258	Freshwater, Plankton	YIDNSVRRDIIKDISNLELPDDWKPNQVIDYIIRKIDKK*
Ga0114974_102648582	3300009183	Freshwater Lake	VEDYIDNSVRRDIIKDIRNLELPDDWKPNQVIDYIIGKIDKK*
Ga0129333_100699422	3300010354	Freshwater To Marine Saline Gradient	MEDYIQDKVRQDIIKEISNLELPYEWKPREVIAYIIRKIDKK*
Ga0129333_100705483	3300010354	Freshwater To Marine Saline Gradient	VEEYLQEKIRRDVIKEISNLELPEEWKPQQVIDYIIRKINRK*
Ga0129333_100900002	3300010354	Freshwater To Marine Saline Gradient	VRDYIDYKVRADIIKEITDLELPEDWKTKQVIDYIVRKINKDNVR*
Ga0129333_102524342	3300010354	Freshwater To Marine Saline Gradient	VEEYLQEKVRKDIIREIGNLELPKEWEPQMVIDYIIRKIDKK*
Ga0129333_102701542	3300010354	Freshwater To Marine Saline Gradient	MVEEYLQEKVRRDVINEISNLELPEEWKPQQVIDYIIRKINKI*
Ga0129333_109963691	3300010354	Freshwater To Marine Saline Gradient	MLEEYIENKVRQDIIKEINNLELPNEWNPKEVINFIIRKIDKGNVK*
Ga0129333_111448552	3300010354	Freshwater To Marine Saline Gradient	MVEDYIQEKVRRDVIKEISNLELPNDWKPYQVIDYIIRKIDKK*
Ga0129335_11802435	3300012962	Aqueous	EEYLQEKVRKDIIREIGNLELPKEWEPQMVIDYIIRKIDKK*
Ga0129337_13774271	3300012968	Aqueous	YIQDKVRRDIIKDILNLELPNEWEPHQVIDYIIRKINKK*
Ga0129338_13802481	3300012970	Aqueous	DKVRRDIVKQISNLELPEEWKPYQVIDYIIRKINKK*
Ga0163212_11116871	3300013087	Freshwater	VEDYINNKVRQDIIKEISNLELPESWKPKMVIDYII
(restricted) Ga0172367_101035939	3300013126	Freshwater	YTVEDYIQDKVRRDIIKEIRNLELPKEWEPQMVIDYIIRKIDKNNV*
(restricted) Ga0172367_102299802	3300013126	Freshwater	VEDYIENKVRQEIIKELSNLELPYEWKPKEVIDFIIRKIEK*
(restricted) Ga0172373_103274372	3300013131	Freshwater	VEDYIQDKVRRDIIKEIRNLELPKEWEPQMVIDYIIRKIDKNNV*
(restricted) Ga0172373_105032432	3300013131	Freshwater	MVEDYVQEKVRQDIIKDILNLELPETWKPQQVIDYIIRKIDKK*
(restricted) Ga0172372_101732621	3300013132	Freshwater	IENKVRQEIIKELSNLELPYEWKPKEVIDFIIRKIEK*
Ga0177922_101684983	3300013372	Freshwater	MVEEYLQEKIRRDVIKEISNLEFPNDWNPQQVIDYIIRKIERQ*
(restricted) Ga0172376_1005833410	3300014720	Freshwater	MVEDYIQDKVRRDIIKEISNLELPNEWKPQQVIDYIIRKIDKK*
(restricted) Ga0172376_102632485	3300014720	Freshwater	MVEDYIQDKVRRDIIKEIRNLELPEDWKPQMVIDYIIRKIDKK*
(restricted) Ga0172376_106747051	3300014720	Freshwater	MVEDYIQDKVRRDIIKEIRNLELPKEWEPQMVIDYIIRKIDKNNV*
Ga0169931_1001445723	3300017788	Freshwater	VEDYIENKVRQEIIKELSNLELPHEWKPKEVIDFIIRKIKKE
Ga0169931_1006981810	3300017788	Freshwater	MVEDYVQEKVRQDIIKDILNLELPETWKPQQVIDYIIRKIDKK
Ga0169931_100733091	3300017788	Freshwater	MVEDYIQDKVRRDIIKEISNLELPNEWKPQQVIDYIIRKIDKK
Ga0169931_106632382	3300017788	Freshwater	MVEDYIQDKVRRDIIKEIRNLELPEDWKPQMVIDYIIRKIDKK
Ga0194113_101390982	3300020074	Freshwater Lake	VEDYINNKVRQDIIKEISNLELPESWKPKMVIDYIIEKINKK
Ga0194113_102255502	3300020074	Freshwater Lake	VEDYINNKVRRDIIKEIRNLELPEDWKPQMVIDYILRKIDKE
Ga0194113_106075742	3300020074	Freshwater Lake	VEDYINNKVRQDIINEIRNLELPEDWKPQMVIDYILRKIDRE
Ga0208091_100047612	3300020506	Freshwater	VEDYIDNSVRRDIIKDISNLELPDDWKPNQVIDYIIRKIDKK
Ga0255147_100026629	3300024289	Freshwater	MVEEYLQEKVRRDIIKEISNLELPNEWKPQQVIDYIIRKINKK
Ga0255147_10171412	3300024289	Freshwater	MVEEYLIEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKIEKK
Ga0255148_10642892	3300024306	Freshwater	MVEDYIQDKVRRDIIKDILNLELPNEWEPHQVIDYIIRKIDKK
Ga0255142_10193252	3300024352	Freshwater	MVEDYIQDKVRRDIIKEIRNLELPNNWKPEQVIDYIIRKIDKK
Ga0256330_10962142	3300024481	Freshwater	LQEKVRRDIIKEISNLELPNEWKPQQVIDYIIRKINKK
Ga0255228_10837222	3300024531	Freshwater	MVEDYIQDKVRRDIIQEIRDLELPNEWEPQMVIDYII
Ga0255283_10279976	3300024557	Freshwater	EDYIQDKVRRDIINEIRNLELPIEWKPQQVIDYIIRKINKE
Ga0255288_11201531	3300024561	Freshwater	NMVEDYIQDKVRRDIINEIRNLELPIEWKPQQVIDYIIRKINKE
Ga0255276_10799752	3300024570	Freshwater	MVEDYIQDKVRRDIIREIRNLELPKEWEPQIVIDYIIRKIDKK
Ga0255271_10241971	3300024864	Freshwater	EKVRRDIIKEISNLELPNEWKPQQVIDYIIRKINKK
Ga0255272_10242314	3300024866	Freshwater	MVEDYIQDKVIRDIIREIRNLELPKEWEPQIVIDYIIRKIDKK
Ga0255272_10335651	3300024866	Freshwater	DKVRRDIINEIRNLELPIEWKPQQVIDYIIRKINKE
Ga0208048_10661451	3300025283	Freshwater	VVEDYINNKVRQDIIKEISNLELPESWKPKMVIDYII
Ga0255285_11004451	3300026562	Freshwater	IEDKVRRDIIKDILNLELPNEWEPHQVIDYIIRKIDKK
Ga0255277_10446732	3300026569	Freshwater	MVEEYLIEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKI
Ga0255274_10700502	3300026570	Freshwater	VEDYIQDKVRRDIIKDILNLELPNDWEPHQVIDYIIR
Ga0255270_10056482	3300026572	Freshwater	MVEEYLQEKVRRDIIKEISNLEIPNERKPKQVIDYIIRKINKK
Ga0255269_12198922	3300026573	Freshwater	MVEDYIQDKVRRDIIREIRNLELPNEWKPQMVIDYIIRKID
Ga0255146_11191091	3300027396	Freshwater	QDKVRRDIINEIRNLELPIEWKPQQVIDYIIRKINKE
Ga0209972_100159583	3300027793	Freshwater Lake	VEEYLQEKVRRDVIKEISNLELPDEWKPHQVIDYIIRKINKK
Ga0209972_100290383	3300027793	Freshwater Lake	VEEYLQEKVRRDVIKEISNLELPEEWKPQQVIDYIIRKINRK
Ga0209972_100980216	3300027793	Freshwater Lake	YIQDKVRRDIIKDILNLELPNDWEPHQVIDYIIRKIDKK
Ga0209972_102086061	3300027793	Freshwater Lake	VEEYLDEKVRRDVIKEIGDLELPEEWKPQQVIDYIIRKINR
Ga0209229_100267575	3300027805	Freshwater And Sediment	VEEYLEQKVRRDIIKEIGNLELPEEWKPQQVIDYIIRKIEIK
Ga0209990_100961482	3300027816	Freshwater Lake	MVEDYIDTKIRRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKV
Ga0255172_10749493	3300028103	Freshwater	VEEYLTEKVRRDIIKEISNLELPEEWKPHQVIDYIIRKINNVK
Ga0256335_11827251	3300028112	Freshwater	VEDYIQDKVRRDIINEIRNLELPIEWKPQQVIDYIIRKINKE
Ga0256331_10545151	3300028286	Freshwater	VEDYIQDKVRRDIIKDILNLELPNDWEPHQVIDYII
Ga0315907_100128406	3300031758	Freshwater	MQDYIDTKVRQDIVNQISNLELPEDWKPQQVIDYIIRKIDKDNVR
Ga0315907_100423884	3300031758	Freshwater	MVEDYIDIKIRRDIIKQISDLELPEDWKTQQVIDYIIRKIDKDNVR
Ga0315907_101272802	3300031758	Freshwater	VEEYLDEKVRRDVIKEIGDLELPEEWKPQQVIDYIIRKINRK
Ga0315907_101736462	3300031758	Freshwater	MVEEYLQEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKIEIK
Ga0315907_101831274	3300031758	Freshwater	MLEEYIENKVRQDIIKEINNLELPHEWKPKEVINFIIRKIDKGNVK
Ga0315907_103427425	3300031758	Freshwater	MVEDYIDTKIRRDIIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKA
Ga0315900_102402614	3300031787	Freshwater	VEDYIENKVRQEIIKELSNLELPYEWKPSEVIRFIIRKIEK
Ga0315900_102627947	3300031787	Freshwater	IIKQIRNLELPKDWKTQQVIDYIIRKIDKDNVEKA
Ga0315909_100315849	3300031857	Freshwater	MVEDYIQEKVRRDIVKDILDLELPETWKPQQVIDYIIRKIDKK
Ga0315909_101180832	3300031857	Freshwater	VEDYIDNSVRRDIIKDIRNLELPEDWKPNQVIDYIIRKIDKK
Ga0315909_102036851	3300031857	Freshwater	NIVEEYLQEKVRRDIAKEIGNLELPKEWEPQQVIDYIIRKIIK
Ga0315909_103610552	3300031857	Freshwater	MEDYIDNSVRRDIIKDIRNLELPDDWKPNQVIDYIIGKIDKK
Ga0315909_106594333	3300031857	Freshwater	MVEEYLQEKIRRDVIKEISNLEFPNEWNPQQVIDYIIRKIERQ
Ga0315904_102979703	3300031951	Freshwater	MVEDYIDTNIRRDIITQIRNLELPEEWKAQQVIDYIIRKIDKDNVEKV
Ga0315904_103252272	3300031951	Freshwater	VEEYLDEKVRRDVIKEIGDLELPEEWKPHQVIDYIIRKINRK
Ga0315904_114618282	3300031951	Freshwater	NRVMEDYIQDKVRQDIIKEISNLELPYEWKPREVIAYIIRKIDKK
Ga0315903_1000904211	3300032116	Freshwater	MVEDYIQDKVRRDIIREIRDLELPNEWEPQMVIDYIIRKIDKK
Ga0315903_103368001	3300032116	Freshwater	VEDYIQDKVRRDIIKDILNLELPNDWEPHQVIDYIIRKIDKK
Ga0315903_111568991	3300032116	Freshwater	EQKVRRDIIKEIGNLELPEEWNPQQVIDYIIRKIEIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters