Metagenome / Metatranscriptome Family F076869

Basic Information
Family ID	F076869
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	52 residues
Representative Sequence	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVSA
Number of Associated Samples	86
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	29.06 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (73.504 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (29.915 % of family members)
Environment Ontology (ENVO)	Unclassified (64.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (71.795 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1LWAeNNiAF_1297060 2BS_KBB_SWE26_205mDRAFT_10295361 3JGI12421J11937_101097351 4BS_KBA_SWE02_21mDRAFT_100218243 5JGI25908J49247_1000214113 6JGI25908J49247_100118082 7JGI25920J50251_100802062 8JGI25911J50253_100119939 9JGI25911J50253_101152271 10Ga0063232_101465972 11Ga0066182_101252133 12Ga0007758_111488932 13Ga0074212_1176591 14Ga0074212_1449323 15Ga0049083_100098522 16Ga0049083_100782072 17Ga0049083_102577031 18Ga0049081_100062292 19Ga0049081_100543461 20Ga0049081_102506452 21Ga0049081_102535791 22Ga0049080_100049331 23Ga0049085_100068022 24Ga0049082_1000225415 25Ga0049084_100146806 26Ga0049084_100157582 27Ga0079957_11882392 28Ga0105747_13302022 29Ga0114340_10066634 30Ga0114343_100043262 31Ga0114973_105872811 32Ga0114918_100190393 33Ga0114918_102004741 34Ga0114968_101100161 35Ga0114966_106689682 36Ga0114971_100736584 37Ga0114971_101223271 38Ga0133913_129946425 39Ga0139557_10050274 40Ga0151515_1073021 41Ga0153697_133713 42Ga0153700_1082912 43Ga0153799_10319003 44Ga0153801_100063221 45Ga0177922_101242231 46Ga0181338_10162322 47Ga0181338_10174831 48Ga0181338_10445511 49Ga0181339_100018317 50Ga0181339_10290331 51Ga0181364_10179131 52Ga0181350_11418131 53Ga0181347_11527761 54Ga0181365_10522012 55Ga0181356_10785171 56Ga0181357_11700811 57Ga0181346_12727881 58Ga0181348_12762241 59Ga0181348_12778132 60Ga0181355_10481161 61Ga0181355_11194204 62Ga0181360_1082752 63Ga0181360_1085953 64Ga0181361_1052514 65Ga0181361_1206212 66Ga0181359_10401414 67Ga0181359_10613715 68Ga0181359_11237272 69Ga0181359_11988282 70Ga0211729_104240395 71Ga0207934_10324081 72Ga0194045_10635272 73Ga0194048_100763093 74Ga0194059_10047964 75Ga0222712_1002014111 76Ga0181354_11046132 77Ga0214919_1001425419 78Ga0214919_104414911 79Ga0210003_11158432 80Ga0210003_11555301 81Ga0208966_10006597 82Ga0208974_10781145 83Ga0208974_11606221 84Ga0208951_10063897 85Ga0208951_10974422 86Ga0208942_10018421 87Ga0208960_100322311 88Ga0208960_10169591 89Ga0208975_11170613 90Ga0209442_12902881 91Ga0209355_11385625 92Ga0209597_10178201 93Ga0209597_10268926 94Ga0209107_100067309 95Ga0209400_12212481 96Ga0307380_100999082 97Ga0307380_108876541 98Ga0307378_104071682 99Ga0307378_106119774 100Ga0307377_105535631 101Ga0315291_101119358 102Ga0315290_105414514 103Ga0315290_112378511 104Ga0315909_1000312026 105Ga0315285_108484062 106Ga0315278_115038261 107Ga0315289_101482676 108Ga0315292_104935272 109Ga0315292_109040283 110Ga0315283_108549724 111Ga0315268_112511162 112Ga0315276_120000151 113Ga0315270_111743122 114Ga0334989_0003516_1822_1974 115Ga0335020_0318568_7_159 116Ga0335029_0757630_57_209 117Ga0335031_0437484_651_812
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1LWAeNNiAF_1297060 2BS_KBB_SWE26_205mDRAFT_10295361 3JGI25908J49247_1000214113 4Ga0063232_101465972 5Ga0105747_13302022 6Ga0114968_101100161 7Ga0114971_100736584 8Ga0307380_100999082 9Ga0315285_108484062
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1LWAeNNiAF_1297060 2BS_KBB_SWE26_205mDRAFT_10295361 3JGI25908J49247_1000214113 4Ga0063232_101465972 5Ga0105747_13302022 6Ga0114968_101100161 7Ga0114971_100736584 8Ga0307380_100999082 9Ga0315285_108484062
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 69.09% β-sheet: 0.00% Coil/Unstructured: 30.91%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF04851	ResIII	5.13
PF11753	DUF3310	3.42
PF00850	Hist_deacetyl	3.42
PF13532	2OG-FeII_Oxy_2	1.71
PF01541	GIY-YIG	0.85
PF07603	DUF1566	0.85
PF02617	ClpS	0.85
PF01391	Collagen	0.85
PF01832	Glucosaminidase	0.85
PF00583	Acetyltransf_1	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	6.84
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	26.50 %
Unclassified	root	N/A	73.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	17.95 %
Unclassified	root	N/A	73.50 %
Viruses	superkingdom	All Organisms → Viruses	8.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.95 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Unclassified	root	N/A	73.50 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.85 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.84 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	1.71 %
Unclassified	root	N/A	73.50 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Unclassified	root	N/A	73.50 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.85 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	1.71 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.84 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.56 %
Pandoravirus	genus	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pandoravirus	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.71 %
Unclassified	root	N/A	73.50 %

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	3.42 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	2.56 %
Pandoravirus celtis	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pandoravirus → Pandoravirus celtis	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.71 %
Unclassified	root	N/A	73.50 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3.42 %
Bacteroidetes bacterium ADurb.Bin028	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	2.56 %
Pandoravirus celtis	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pandoravirus → Pandoravirus celtis	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.71 %
Unclassified	root	N/A	73.50 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes bacterium ADurb.Bin028	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	2.56 %
Pandoravirus celtis	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pandoravirus → Pandoravirus celtis	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.71 %
Unclassified	root	N/A	73.50 %
unclassified Bacteroidales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales	3.42 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.56 %

Name	Rank	Taxonomy	Distribution
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	3.42 %
Bacteroidetes bacterium ADurb.Bin028	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	2.56 %
Pandoravirus celtis	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pandoravirus → Pandoravirus celtis	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.13 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1.71 %
Unclassified	root	N/A	73.50 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.56 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2046860005\|LWAeNNiAF_GBUVFP102HPFGU	Not Available	543	Open in IMG/M
3300000126\|BS_KBB_SWE26_205mDRAFT_c1029536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	877	Open in IMG/M
3300000756\|JGI12421J11937_10109735	Not Available	738	Open in IMG/M
3300000792\|BS_KBA_SWE02_21mDRAFT_10021824	All Organisms → Viruses → Predicted Viral	2046	Open in IMG/M
3300003277\|JGI25908J49247_10002141	All Organisms → cellular organisms → Bacteria	6308	Open in IMG/M
3300003277\|JGI25908J49247_10011808	All Organisms → Viruses → Predicted Viral	2703	Open in IMG/M
3300003404\|JGI25920J50251_10080206	Not Available	783	Open in IMG/M
3300003411\|JGI25911J50253_10011993	Not Available	3284	Open in IMG/M
3300003411\|JGI25911J50253_10115227	Not Available	803	Open in IMG/M
3300004054\|Ga0063232_10146597	Not Available	686	Open in IMG/M

Showing 1 to 10 of 117 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.73%
Terrestrial	Environmental → Terrestrial	4.27%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	88.89%
Marine	Environmental → Aquatic → Marine	6.84%
Soil	Environmental → Terrestrial → Soil	4.27%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	4.27%
Coastal	Environmental → Aquatic → Marine → Coastal	0.85%
Ice	Environmental → Aquatic → Freshwater → Ice	0.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.85%
Lake	Environmental → Aquatic → Freshwater → Lake	32.48%
Lentic	Environmental → Aquatic → Freshwater → Lentic	52.99%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.71%
Oceanic	Environmental → Aquatic → Marine → Oceanic	3.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.85%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.71%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.26%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	3.42%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.56%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.85%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	47.86%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	22.22%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	4.27%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	2.56%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	3.42%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.85%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.13%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.27%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.85%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.71%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.69%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	17.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment	0.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.71%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.85%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine	0.85%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	10.26%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	1.71%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	4.27%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2046860005	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from SIP 13C-methane aerobic no nitrate additional fraction	Environmental	Open in IMG/M
3300000126	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300000792	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300004054	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2)	Environmental	Open in IMG/M
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Showing 1 to 10 of 86 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LWAeNNiAF_1297060	2046860005	Freshwater Sediment	NNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
BS_KBB_SWE26_205mDRAFT_10295361	3300000126	Marine	MITQFMITEITKLISSAQKQNVKLSQEYVDALYXLXIXXIIMLRNSYESEKIFS*
JGI12421J11937_101097351	3300000756	Freshwater And Sediment	MITTFMINEITKLISSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS*
BS_KBA_SWE02_21mDRAFT_100218243	3300000792	Marine	MITQFMITEITKLISSAQKQNVKLSQEYVDALYDLNIQDIIMLRNSYESEKIFS*
JGI25908J49247_1000214113	3300003277	Freshwater Lake	MITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA*
JGI25908J49247_100118082	3300003277	Freshwater Lake	MITMFMITEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS*
JGI25920J50251_100802062	3300003404	Freshwater Lake	MITMFMITEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEK
JGI25911J50253_100119939	3300003411	Freshwater Lake	EITKLISSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS*
JGI25911J50253_101152271	3300003411	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYXAXKLVSA*
Ga0063232_101465972	3300004054	Freshwater Lake	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLRESYIAEKIVSA*
Ga0066182_101252133	3300004125	Freshwater Lake	IYMITMFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVSA*
Ga0007758_111488932	3300004790	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVSA*
Ga0074212_1176591	3300005491	Sediment	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYMLPIEEIVELQKSYSAEKLVSA*
Ga0074212_1449323	3300005491	Sediment	KLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVTA*
Ga0049083_100098522	3300005580	Freshwater Lentic	MITMFMITEITKLVASAQKQNVKLTQEYVDALYNLNINDIIMLRNSYESEKILS*
Ga0049083_100782072	3300005580	Freshwater Lentic	MITQFMITEITKLISSAQKQNVKLSQEYIDALYELNIQDIVMLRNSYESEKILS*
Ga0049083_102577031	3300005580	Freshwater Lentic	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0049081_100062292	3300005581	Freshwater Lentic	MITTFMINEITKLISSAQKQNVKLSAEYVDALYELNIQDIVMLRNSYESEKILS*
Ga0049081_100543461	3300005581	Freshwater Lentic	KLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVTA*
Ga0049081_102506452	3300005581	Freshwater Lentic	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVTA*
Ga0049081_102535791	3300005581	Freshwater Lentic	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLKESYNAEKLVSA*
Ga0049080_100049331	3300005582	Freshwater Lentic	ASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVTA*
Ga0049085_100068022	3300005583	Freshwater Lentic	MITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLRNSYESEKILS*
Ga0049082_1000225415	3300005584	Freshwater Lentic	MITMFMINEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA*
Ga0049084_100146806	3300005585	Freshwater Lentic	QFMINEITKLVKSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS*
Ga0049084_100157582	3300005585	Freshwater Lentic	MITLFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYTAEKLVSA*
Ga0079957_11882392	3300005805	Lake	MITQFMIAEITKLVTSAQKQNVFLTQEYIDALYELDIQTIVMLRESYIAEKIVSA*
Ga0105747_13302022	3300007974	Estuary Water	MITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYIAEKIVSA*
Ga0114340_10066634	3300008107	Freshwater, Plankton	MITLFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0114343_100043262	3300008110	Freshwater, Plankton	MITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0114973_105872811	3300009068	Freshwater Lake	MITMFMITEITKLINSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS*
Ga0114918_100190393	3300009149	Deep Subsurface	MITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRDSYNAEKLITA*
Ga0114918_102004741	3300009149	Deep Subsurface	MITQFMITEITKLISSAQKQNVKLSQEYVDALYELNIQDIIMLRNSYESEKILS*
Ga0114968_101100161	3300009155	Freshwater Lake	LFLYCNQLKFIYMITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0114966_106689682	3300009161	Freshwater Lake	MITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA*
Ga0114971_100736584	3300009185	Freshwater Lake	SAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS*
Ga0114971_101223271	3300009185	Freshwater Lake	MITEVTKLVASAQKNNITFSQEYIDALYDLPINIIVELRESYNAEKLVSA*
Ga0133913_129946425	3300010885	Freshwater Lake	LVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0139557_10050274	3300011010	Freshwater	MINEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELQKSYNAEKLVSA*
Ga0151515_1073021	3300011114	Freshwater	MITLFMITEVTKLVASAQKNNITFSQEYIDALYMLDIQDIVMLKESYSAEKLVSA*
Ga0153697_133713	3300011334	Freshwater	MITQFMITEITKLVTSAQKQNVFLTQEYIDALYELDIQDIVMLRESYIAEKLVSA*
Ga0153700_1082912	3300011339	Freshwater	MITQFMITEITKLVTSAQKQNVFLTQEYIDALYELDIQTIVMLRESYIAEKLVSA*
Ga0153799_10319003	3300012012	Freshwater	MITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0153801_100063221	3300012017	Freshwater	CNQLKFIYMITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA*
Ga0177922_101242231	3300013372	Freshwater	CNQLKFIYMITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINIIVELRESYNAEKLVSA*
Ga0181338_10162322	3300015050	Freshwater Lake	MITQFMINEITKLISSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS*
Ga0181338_10174831	3300015050	Freshwater Lake	MITEVTKLVASAQKNNITFSQEYIDALYDLPINVIIELRESYSAEKLVSA*
Ga0181338_10445511	3300015050	Freshwater Lake	MITEVTKLVASAQKQNVKLTQEYVDALYNLNINDIIMLRNSYESEKILS*
Ga0181339_100018317	3300017700	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSVEKLVSA
Ga0181339_10290331	3300017700	Freshwater Lake	MITQFMINEITKLISSAQKQNVKLTQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0181364_10179131	3300017701	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYIAEKIVSA
Ga0181350_11418131	3300017716	Freshwater Lake	MITMFMITEVTKLVASAQKNGVIFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0181347_11527761	3300017722	Freshwater Lake	LKFIYMITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYSAEKLVSA
Ga0181365_10522012	3300017736	Freshwater Lake	SAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0181356_10785171	3300017761	Freshwater Lake	MITQFMINEITKLVKSAQKQNVKLTQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0181357_11700811	3300017777	Freshwater Lake	TEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYSAEKLVSA
Ga0181346_12727881	3300017780	Freshwater Lake	VASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0181348_12762241	3300017784	Freshwater Lake	EVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0181348_12778132	3300017784	Freshwater Lake	MITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNA
Ga0181355_10481161	3300017785	Freshwater Lake	MFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYIAEKIVSA
Ga0181355_11194204	3300017785	Freshwater Lake	MITQFMITESTKLVTSAQKQNVFLTQEYIDALYMLPIEEIVELQKSYNSEKLVSA
Ga0181360_1082752	3300019781	Freshwater Lake	MITMFMITEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0181360_1085953	3300019781	Freshwater Lake	MITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLISA
Ga0181361_1052514	3300019783	Freshwater Lake	MITMFMITEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0181361_1206212	3300019783	Freshwater Lake	MITQFMINEITKLISSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS
Ga0181359_10401414	3300019784	Freshwater Lake	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLRESYIAEKIVSA
Ga0181359_10613715	3300019784	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVSA
Ga0181359_11237272	3300019784	Freshwater Lake	MITMFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYIAEKIVSA
Ga0181359_11988282	3300019784	Freshwater Lake	MFMITEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0211729_104240395	3300020172	Freshwater	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLKESYNAEKLVSA
Ga0207934_10324081	3300020561	Freshwater	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0194045_10635272	3300021516	Anoxic Zone Freshwater	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0194048_100763093	3300021519	Anoxic Zone Freshwater	MITMFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYIAEKIVTA
Ga0194059_10047964	3300021600	Anoxic Zone Freshwater	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLKESYIAEKLVSA
Ga0222712_1002014111	3300021963	Estuarine Water	MITQFMITEITKLVKSAQKQNVYLTQEYIDALYELDIQDIVMLKESYNAEKLVSA
Ga0181354_11046132	3300022190	Freshwater Lake	MITEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0214919_1001425419	3300023184	Freshwater	MITTFMINEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0214919_104414911	3300023184	Freshwater	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYMLPIEEIVELQKSYNAEKLVSA
Ga0210003_11158432	3300024262	Deep Subsurface	MITQFMITEITKLISSAQKQNVKLSQEYVDALYELNIQDIIMLRNSYESEKILS
Ga0210003_11555301	3300024262	Deep Subsurface	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRDSYNAEKLITA
Ga0208966_10006597	3300027586	Freshwater Lentic	MITMFMINEVTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0208974_10781145	3300027608	Freshwater Lentic	EVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVTA
Ga0208974_11606221	3300027608	Freshwater Lentic	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYNAEKLVTA
Ga0208951_10063897	3300027621	Freshwater Lentic	MITQFMITEITKLISSAQKQNVKLSQEYIDALYELNIQDIVMLRNSYESEKILS
Ga0208951_10974422	3300027621	Freshwater Lentic	MITMFMITEITKLVASAQKQNVKLTQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0208942_10018421	3300027627	Freshwater Lentic	MITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLRNSYESEKILS
Ga0208960_100322311	3300027649	Freshwater Lentic	MITLFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYTAEKLVSA
Ga0208960_10169591	3300027649	Freshwater Lentic	QFMINEITKLVKSAQKQNVKLSQEYVDALYDLNINDIIMLRNSYESEKILS
Ga0208975_11170613	3300027659	Freshwater Lentic	MITTFMINEITKLISSAQKQNVKLSAEYVDALYELNIQDIVMLRNSYESEKILS
Ga0209442_12902881	3300027732	Freshwater Lake	FIYMITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0209355_11385625	3300027744	Freshwater Lake	ITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0209597_10178201	3300027746	Freshwater Lake	MITQFMINEITKLISSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0209597_10268926	3300027746	Freshwater Lake	MITMFMINEVTKLVASAQKNNITFSQEYIDALYDLPINIIVELRESYNAEKLVSA
Ga0209107_100067309	3300027797	Freshwater And Sediment	MITTFMINEITKLISSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0209400_12212481	3300027963	Freshwater Lake	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINIIVELRESYNAEKLVSA
Ga0307380_100999082	3300031539	Soil	MITMFMITEVTKLVASAQKNNITFSQEYIDALYMLEIQDIVMLKESYNAEKILS
Ga0307380_108876541	3300031539	Soil	MITQFMITEITKLISSAQKQNVKLSQEYVDALYELNIKDIIMLRNSYESEKIFS
Ga0307378_104071682	3300031566	Soil	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLKES
Ga0307378_106119774	3300031566	Soil	NITFSQEYIDALYDLPINVIVELRDSYNAEKLITA
Ga0307377_105535631	3300031673	Soil	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIVELRDSYNAEKLVSA
Ga0315291_101119358	3300031707	Sediment	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLKESYNAEKLVTA
Ga0315290_105414514	3300031834	Sediment	EITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLKESYNAEKLVTA
Ga0315290_112378511	3300031834	Sediment	ITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLRESYSAEKLVSA
Ga0315909_1000312026	3300031857	Freshwater	MITLFMITEITKLVASAQKNNITFSQEYIDALYDLPINVIVELRESYSAEKLVSA
Ga0315285_108484062	3300031885	Sediment	NQLKFIYMITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLRN
Ga0315278_115038261	3300031997	Sediment	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLRESYSAEKLVSA
Ga0315289_101482676	3300032046	Sediment	MITMFMITEVTKLVASAQKNNITFSQEYIDALYDLPINVIIELRESYSAEKLVSA
Ga0315292_104935272	3300032143	Sediment	MITQFMITEITKLISSAQKQNVILSAEYIDALYELNIQDIVMLKNSYESEKILS
Ga0315292_109040283	3300032143	Sediment	MITMFMITEVTKLVASAQKNGVSFSNEYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0315283_108549724	3300032164	Sediment	VTKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0315268_112511162	3300032173	Sediment	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLKESYSAEKLVSA
Ga0315276_120000151	3300032177	Sediment	ILTNMITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLRESYSAEKLVSA
Ga0315270_111743122	3300032275	Sediment	MITMFMITEVNKLVASAQKNGVSFSNDYIDALYELPIEEIVELQKSYNAEKLVSA
Ga0334989_0003516_1822_1974	3300033984	Freshwater	MITEITKLVTSAQKQNVFLTQEYIDALYELDIQTIVMLRESYIAEKLVSA
Ga0335020_0318568_7_159	3300034082	Freshwater	MITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLKESYNAEKLVSA
Ga0335029_0757630_57_209	3300034102	Freshwater	MITEITKLVTSAQKQNVFLTQEYIDALYELDIQTIVMLRESYIAEKIVSA
Ga0335031_0437484_651_812	3300034104	Freshwater	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQDIVMLKESYNAEKLVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076869

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences