Basic Information | |
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Family ID | F076858 |
Family Type | Metagenome |
Number of Sequences | 117 |
Average Sequence Length | 37 residues |
Representative Sequence | MSEIAEFLRALNGALGLIAIAFCVYFLACIISGGGDK |
Number of Associated Samples | 62 |
Number of Associated Scaffolds | 117 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 88.89 % |
% of genes near scaffold ends (potentially truncated) | 12.82 % |
% of genes from short scaffolds (< 2000 bps) | 63.25 % |
Associated GOLD sequencing projects | 58 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (56.410 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (28.205 % of family members) |
Environment Ontology (ENVO) | Unclassified (64.103 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (64.103 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 49.23% β-sheet: 0.00% Coil/Unstructured: 50.77% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Sediment Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Freshwater Lake Lake Freshwater Freshwater To Marine Saline Gradient Estuarine Water Soil Deep Subsurface Sediment |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0068876_100136165 | 3300005527 | Freshwater Lake | MSEIAEVLRALNGALGLICIAFCVYFLACIISGGDK* |
Ga0049081_100265713 | 3300005581 | Freshwater Lentic | MTEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDK* |
Ga0049081_100300132 | 3300005581 | Freshwater Lentic | MDEIAEFLRLLNSALGLIAIAFCVYFLACMIIGRGDDK* |
Ga0049080_100160588 | 3300005582 | Freshwater Lentic | EIAEFLRALNGALGLIVVAICVYFLACMIIGRGDK* |
Ga0049080_100817225 | 3300005582 | Freshwater Lentic | MTEIAEFLRALNGALGLIAIAFCVYFLASMFMGKGDK* |
Ga0078894_1001076611 | 3300005662 | Freshwater Lake | MSVIAEVLKGLNAALGLICIAFCVYFLACIISGGDDK* |
Ga0078894_100340026 | 3300005662 | Freshwater Lake | MSEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK* |
Ga0078894_107485571 | 3300005662 | Freshwater Lake | MSEIAEFLRALNGALGLIAIAFCVYFLACILTSKGDKE* |
Ga0079957_10132896 | 3300005805 | Lake | MDEIAEFLRALNGALGLIAIAFCVYFLACMFIGRNDK* |
Ga0079957_10695304 | 3300005805 | Lake | MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGDKE* |
Ga0114340_100049536 | 3300008107 | Freshwater, Plankton | MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGDGE* |
Ga0114340_10234032 | 3300008107 | Freshwater, Plankton | MVEIAEFLRALNGALGLICIAFCVYFLACLLSGGDDK* |
Ga0114344_12037903 | 3300008111 | Freshwater, Plankton | GKMAEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK* |
Ga0114350_100446112 | 3300008116 | Freshwater, Plankton | MSEIAEFLRALNGALGLIAIAFCVYFLACMFIGRGDKE* |
Ga0114350_10076424 | 3300008116 | Freshwater, Plankton | MAEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK* |
Ga0114350_10077925 | 3300008116 | Freshwater, Plankton | MREFAEFLRMFNDALGLILIAFCVYFLACLFMGRSNDNE* |
Ga0114350_10856363 | 3300008116 | Freshwater, Plankton | MNEIAEFLRALNGALGLICIAIAVYFLACIVMGKGGDK* |
Ga0114350_10952933 | 3300008116 | Freshwater, Plankton | MDEIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDK* |
Ga0114350_11160723 | 3300008116 | Freshwater, Plankton | MDEIAEFLRSLNGALGLIVVAICVYFLACMIMVRGDK* |
Ga0114350_11656254 | 3300008116 | Freshwater, Plankton | MEEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDE* |
Ga0114355_12183404 | 3300008120 | Freshwater, Plankton | MSEIVEILRALNGALGVICIAFCVYFLACIISGGDK* |
Ga0114841_10267198 | 3300008259 | Freshwater, Plankton | MDEIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDDK* |
Ga0114363_100198522 | 3300008266 | Freshwater, Plankton | MREFAEFLRMLNDALGLIAIAFCVYFLACILTSKGDKE* |
Ga0114363_100541814 | 3300008266 | Freshwater, Plankton | MSEIAEFLRALNGALGLIAIAFCVYFLACMFIGRGDDK* |
Ga0114363_10126427 | 3300008266 | Freshwater, Plankton | MSEIAEALRMLNGALGLICIAFCVYFLACMLMGRGDDE* |
Ga0114363_10137975 | 3300008266 | Freshwater, Plankton | MSEIAEFLRALNGALGLICIAFCVYFLACIISGGDDK* |
Ga0114363_10393408 | 3300008266 | Freshwater, Plankton | MSEIAEFLRALNGALGLICIAFCVYFLACLISGGDDK* |
Ga0114363_10463687 | 3300008266 | Freshwater, Plankton | MDEIAEFLRALNGALGLIVVAICVYFLACIIIGRGDDK* |
Ga0114363_11700174 | 3300008266 | Freshwater, Plankton | MSEIAEILRALNGALGLICIAFCVYFLACIISGGDK* |
Ga0114364_11877192 | 3300008267 | Freshwater, Plankton | MNEIAEFLRALNGALGLICIAVAVYFLACIVMGKGDDK* |
Ga0114876_10909842 | 3300008448 | Freshwater Lake | MSEIAEFLRALNGALGLICIAFCVYFLACLISGGGDE* |
Ga0114880_12432391 | 3300008450 | Freshwater Lake | MDEIAEFLRALNGALGLIAIAFCVYFLACIIIGRGDDK* |
Ga0105103_100704106 | 3300009085 | Freshwater Sediment | MSEIAEFLRALNGALGLICIAFCVYFLACIVMGRGDKE* |
Ga0105104_100155197 | 3300009168 | Freshwater Sediment | MSEIAEFLRALNGALGLIAIAFCVYFLACIISGGGDK* |
Ga0105104_100297853 | 3300009168 | Freshwater Sediment | MDEIAEFLRLLNSALGLIAIAFCVYFLACMIIGRGDKE* |
Ga0129333_106486244 | 3300010354 | Freshwater To Marine Saline Gradient | MREFAELLRMFNDALGLILIAFCVYFLACIVMGRGDKE* |
Ga0129333_106967723 | 3300010354 | Freshwater To Marine Saline Gradient | MSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDKE* |
Ga0129333_107000272 | 3300010354 | Freshwater To Marine Saline Gradient | MNEVAEFLRALNGALGLIAIAFCVYFLACMFIGRGDK* |
Ga0129333_110871273 | 3300010354 | Freshwater To Marine Saline Gradient | MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGEDK* |
Ga0129336_1000491913 | 3300010370 | Freshwater To Marine Saline Gradient | MAEFLRLLNSALGLIAIAFCVYFLACMIIGRGDDK* |
Ga0164292_103681622 | 3300013005 | Freshwater | MREFAEFLRMLNEALGLIAIAFCVYFLACMFIGRGDKE* |
(restricted) Ga0172367_100129039 | 3300013126 | Freshwater | MNEIAEVLKGLNAALGLICIAFCVYLIACILSGGDDK* |
(restricted) Ga0172367_100205842 | 3300013126 | Freshwater | MVEIAEFLRALNGALGLICIAIAVYFLACIVIGKGGDK* |
(restricted) Ga0172367_106943272 | 3300013126 | Freshwater | MVEIAEFLRALNGALGLICIAFCVYLLACILSGGKDK* |
(restricted) Ga0172372_101803041 | 3300013132 | Freshwater | MVEIAEFLRALNGALGLICIAFCVYFLACLLSGGKDK* |
Ga0181338_10345244 | 3300015050 | Freshwater Lake | MDEIAEFLRSLNGALGLIVVAICVYFLACMIIGRGEK* |
Ga0181363_10712103 | 3300017707 | Freshwater Lake | MDEIAEFLRLLNGALGLIVVAICVYFLACIIIGRGDDK |
Ga0181352_10268405 | 3300017747 | Freshwater Lake | MSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDKE |
Ga0181352_10351052 | 3300017747 | Freshwater Lake | MSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDK |
Ga0181352_10578563 | 3300017747 | Freshwater Lake | MSEIAEVLRALNGALGLICIAFCVYFLACIVMGRGDKE |
Ga0181352_11750712 | 3300017747 | Freshwater Lake | MSEIAEFLRMFNDALGLILIAFCVYFLACIVMGRGGDE |
Ga0181352_12062341 | 3300017747 | Freshwater Lake | MREFAEFLRMLNDALGLIAIAFCVYFLACILTSRGDKE |
Ga0181344_10122085 | 3300017754 | Freshwater Lake | MSEVAEFLQKLNGALGLIVVAICVYFLACMIIGRGDKE |
Ga0181344_11049521 | 3300017754 | Freshwater Lake | GPVSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDDK |
Ga0181344_11602081 | 3300017754 | Freshwater Lake | LYRCPCDRRGRRTMREFAEFLQMLNSALGLIAIAFCVYFLACILTSKGDKE |
Ga0181344_12084333 | 3300017754 | Freshwater Lake | MSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDE |
Ga0181356_10872767 | 3300017761 | Freshwater Lake | NEVAEFLQKLNGALGLIVVAICVYFLACMVIGRGDK |
Ga0181358_10552651 | 3300017774 | Freshwater Lake | MDDIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDK |
Ga0181357_10595502 | 3300017777 | Freshwater Lake | MSEVAEFLQKLNGALGLIVVAICVYFLACMIIGRGDKK |
Ga0181346_10712105 | 3300017780 | Freshwater Lake | MDEIAEFLRALNGALGLIAVAFCVYFLACMIIGRGDK |
Ga0181355_10137924 | 3300017785 | Freshwater Lake | MSEIAEILRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0181355_10995902 | 3300017785 | Freshwater Lake | MSAIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDK |
Ga0181355_13231452 | 3300017785 | Freshwater Lake | MDEIAEFLRLLNSALGLIAIAFCVYFLACMIIGRGDKE |
Ga0181359_10322133 | 3300019784 | Freshwater Lake | MSEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0222714_100688965 | 3300021961 | Estuarine Water | MSEIAEFLRALNGALGLICIAFCVYFLACILSGGDDK |
Ga0222714_101108443 | 3300021961 | Estuarine Water | MSEIVEILRALNGALGLICIAFCVYFLACIISGGDK |
Ga0222712_101063188 | 3300021963 | Estuarine Water | MSEIAEFLRALNGALGLICIAFCVYFLACLLTGGDDK |
Ga0181353_10476733 | 3300022179 | Freshwater Lake | MSEIAEFLRALNGALGLIAIAFCVYFLACMFIGRGDKK |
Ga0181353_10623393 | 3300022179 | Freshwater Lake | MNEIAEFLRSLNGALGLICIAIAVYFLACIVMGKGGDK |
Ga0181353_10776952 | 3300022179 | Freshwater Lake | MNEVAEFLQKLNGALGLIVVAICVYFLACMIIGRGDK |
Ga0181353_11180001 | 3300022179 | Freshwater Lake | MVDIAEFLRALNGALGLICIAFCVYFLACILSGGDDK |
Ga0181354_11496672 | 3300022190 | Freshwater Lake | MSAIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDKE |
Ga0181351_10851875 | 3300022407 | Freshwater Lake | MDEIAEFLRALNGALGLIAIAFCVYFLACMIIGRGDK |
Ga0208974_10364761 | 3300027608 | Freshwater Lentic | MDEIAEFLRALNGALGLIVVAICVYFLACMIIGRGDK |
Ga0208974_10378754 | 3300027608 | Freshwater Lentic | MDEIAEFLRLLNSALGLIAIAFCVYFLACMIIGRGDDK |
Ga0208975_11310663 | 3300027659 | Freshwater Lentic | MDEIAEFLRSLNGALGLIVVAICVYFLACIIIGRGDK |
Ga0209033_12192272 | 3300027697 | Freshwater Lake | MVEIAEFLRALNGALGLICIAFCVYFLACILSGGDDK |
(restricted) Ga0247836_12804633 | 3300027728 | Freshwater | PMSEIAEVLRALNGALGLICIAICVYFLACIVIGRGDKE |
(restricted) Ga0247833_10493164 | 3300027730 | Freshwater | MSEIAEILRALNGALGLICIAFCVYFLACIVIGRGDK |
(restricted) Ga0247833_11176543 | 3300027730 | Freshwater | MSEIAEVLRALNGALGLICIAICVYFLACIVIGRGDKE |
Ga0209593_101566911 | 3300027743 | Freshwater Sediment | MSEIAEFLRALNGALGLIAIAFCVYFLACIISGGG |
Ga0209358_102710004 | 3300027804 | Freshwater Lake | YRRGMRMAEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDE |
Ga0209990_1000129334 | 3300027816 | Freshwater Lake | MAEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0209990_100056066 | 3300027816 | Freshwater Lake | MSEIAEVLRALNGALGLICIAFCVYFLACIISGGDK |
(restricted) Ga0247837_11383092 | 3300027970 | Freshwater | MSEIAEILRALNGALGLICIAICVYFLACIVIGRGDKE |
Ga0247723_10549682 | 3300028025 | Deep Subsurface Sediment | MSEVAEVLRALNGALGLICIAFCVYFLACIISGGDK |
(restricted) Ga0247839_11267413 | 3300028553 | Freshwater | MSEIAEILRALNGALGLICIAFCVYFLACIISGGGK |
(restricted) Ga0247843_10475847 | 3300028569 | Freshwater | MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGEDK |
Ga0315907_1000744210 | 3300031758 | Freshwater | MSEIAEFLRALNGALGLIAIAFCVYFLACMFIGRGDDK |
Ga0315907_100124856 | 3300031758 | Freshwater | MSEIAEFLRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0315909_100064505 | 3300031857 | Freshwater | MEEIAEFLRALNGALGLIAIAFCVYFLACMFMGRGDE |
Ga0315909_100566249 | 3300031857 | Freshwater | MREFAEFLRMFNDALGLILIAFCVYFLACLFMGRSNDNE |
Ga0315909_101091624 | 3300031857 | Freshwater | MVEIAEFLRALNGALGLICIAFCVYFLACLLSGGDDK |
Ga0315909_101142294 | 3300031857 | Freshwater | MSEIVEILRALNGALGVICIAFCVYFLACIISGGDK |
Ga0315909_102423044 | 3300031857 | Freshwater | MSEIAEFLRALNGALGLICIAFCVYFLACLISGGDDK |
Ga0315909_103032075 | 3300031857 | Freshwater | MSEIAEALRMLNGALGLICIAFCVYFLACMLMGRGDDE |
Ga0315909_104643343 | 3300031857 | Freshwater | MREIAEFLRMFNDALGLILIAFCVYFLACIVMGRGDKE |
Ga0315909_104676201 | 3300031857 | Freshwater | MREFAEFLRMLNEALGLIAIAFCVYFLACIVMGRGDKE |
Ga0315909_105406364 | 3300031857 | Freshwater | VSEIAEFLRALNGALGLIAIAFCVYFLACMFMGRG |
Ga0315909_105779833 | 3300031857 | Freshwater | MSEIAEALRMLNGALGLICIAVAVYFLACIVMGKGDDE |
Ga0315904_108838462 | 3300031951 | Freshwater | MSEIAEFLRALNGALGLIAIAFCVYFLACMFIGRGDKE |
Ga0315904_109011133 | 3300031951 | Freshwater | MDEIAEFLRALNGALGLIVVAICVYFLACIIIGRGDK |
Ga0315904_109353582 | 3300031951 | Freshwater | MDEIAEFLRALNGALGLIAIAFCVYFLACIIIGRGDDK |
Ga0315901_106565743 | 3300031963 | Freshwater | MDEIAEFLRSLNGALGLIVVAICVYFLACIIIGRGDDK |
Ga0315903_104075394 | 3300032116 | Freshwater | MREFAEFLRMLNDALGLIAIAFCVYFLACIVMGRGDKE |
Ga0316621_101224093 | 3300033488 | Soil | MSVIAEVLKGLNAALGLICIAFCVYFLACIISGGDDK |
Ga0334982_0033611_1662_1778 | 3300033981 | Freshwater | MREFAEFLRMLNEALGLIAIAFCVYFLACIIIGRGDKE |
Ga0334986_0056197_432_548 | 3300034012 | Freshwater | MSEVAEFLRALNGALGLIAIAFCVYFLACMIIGRGDKE |
Ga0335021_0161554_588_701 | 3300034023 | Freshwater | MSEIAEFLRALNGALGLIAIAFCVYFLACILSGGDDK |
Ga0334987_0636824_3_110 | 3300034061 | Freshwater | MDEIAEFLRSLNGALGLIVVAICVYFLACIIIGRGD |
Ga0334995_0037727_1102_1218 | 3300034062 | Freshwater | MNWIAEALQTLNGALGLIVIAFCVYFLACMIIGKGDKK |
Ga0335010_0056162_3_131 | 3300034092 | Freshwater | HGESMNWIAEALQTLNGALGLIVIAFCVYFLACMIIGKGDKK |
Ga0335036_0002476_6253_6369 | 3300034106 | Freshwater | MSEIAEFLRMLNEALGLIAIAFCVYFLACIVMGRGDKE |
Ga0335036_0078973_1760_1873 | 3300034106 | Freshwater | MSVIAEVLRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0335036_0321910_208_324 | 3300034106 | Freshwater | MSEIAEFLRALNGALGLIAIAFCVYFLACILTSKGDKE |
Ga0335036_0429116_2_112 | 3300034106 | Freshwater | AEIAEVLRALNGALGLICIAFCVYFLACIISGGDDK |
Ga0335068_0194573_2_109 | 3300034116 | Freshwater | MREFAEFLRMFNDALGLILIAFCVYFLACIVMGRGD |
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