Basic Information | |
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Family ID | F076627 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 118 |
Average Sequence Length | 46 residues |
Representative Sequence | GSVSGDLSSEVPLGSDPGSAEGYGPTLVVRGKTVSGDFRVFRAS |
Number of Associated Samples | 105 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.85 % |
% of genes near scaffold ends (potentially truncated) | 99.15 % |
% of genes from short scaffolds (< 2000 bps) | 94.92 % |
Associated GOLD sequencing projects | 100 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (91.525 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (9.322 % of family members) |
Environment Ontology (ENVO) | Unclassified (26.271 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.915 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 18.06% Coil/Unstructured: 81.94% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Peatland Freshwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Glacier Forefield Soil Grasslands Soil Surface Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Arctic Peat Soil Permafrost Soil Soil Grasslands Soil Grass Soil Soil Hardwood Forest Soil Soil Soil Rice Paddy Soil Tropical Peatland Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Corn Rhizosphere Populus Rhizosphere Corn Rhizosphere Corn Rhizosphere Rhizosphere Simulated |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
P3_DRAFT_00782260 | 2088090008 | Soil | TNLDVDAGSVSGDLSSEVPLGSDRADEAGPTLIVRGKTVSGDFRVFRAA |
A2_c1_00492010 | 2124908043 | Soil | VDAGSVSGDLASEVPLGSDPDAAGGDGPALVVRGKTVSGDFRVFRGL |
KansclcFeb2_06069540 | 2124908045 | Soil | EVGVAAGSNLDVDAGSVSGDLSSEVPLGSDPGAGVAEGPTLVVRGKTVSGDFRVYRA |
A_all_C_01982170 | 2140918007 | Soil | AAGTNLDVDAGSVSGDLASEVPLGSDPDAAGGDGPALVVRGKTVSGDFRVFRGL |
cont_0611.00006550 | 2166559005 | Simulated | RRFRPGDLTSEVPLGSDPGSGGCSWPVLVVRGKTVSGDFRVFRAV |
L01_06784920 | 2170459006 | Grass Soil | SEVPLADTPDRSDDGGPTVVVRGKTVSGDFRVFRAA |
JGI20188J14859_10061111 | 3300001418 | Arctic Peat Soil | GSVSGDLSSEVALGSDIGNIGGGGPTLVVRGKTVSGDFKVFRAA* |
C688J18823_106479852 | 3300001686 | Soil | DIEVGVAAGTNLDVDAGSVSGDLASEVPLGDTPGGNGGEGPVLVLRGKTVSGDFRVFRGQ |
Ga0066679_107597751 | 3300005176 | Soil | VAAGTNLDVDAGSVSGDLASEVPLGSDPSAIGGDGPALVVRGKTVSGDFRVFRGL* |
Ga0066688_109544182 | 3300005178 | Soil | DVDAGSVSGDLTSEVALGSDIGNIGPEGPMLVVRGKTVSGDFKVFRAA* |
Ga0070709_116342742 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | GDIEVGVETGTNLDVDAGSVSGDLSSEVPLGSDSASAVGEGPTLVVRGKSVSGDFRVFRAG* |
Ga0070714_1022810951 | 3300005435 | Agricultural Soil | GVAAGTNVDVDANSVSGDLDSEVPLGSDSGGLAPGPTLVVRGKTVSGDFRLVRAS* |
Ga0070711_1017262351 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | LDVDANSVSGDLDSEVALGGELEGLEEGGPTLVVRGKTVSGDFRIVRA* |
Ga0070706_1015980491 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VAPGSNLDVDAGSVSGDLASEVPLGSEPATGGDGPTVVVRGRTVSGDFKVFRAA* |
Ga0070706_1020076442 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | TNLDVDAGSVSGELSSEVPLGSEPGEAGGDGPFLVVRGKTVSGDFRVFRAG* |
Ga0070741_103377241 | 3300005529 | Surface Soil | APGTNLDVDAGSVSGDLSSEVPLGSDPSYNGGEGPTLVVRGKTVSGDFRVFRAA* |
Ga0068853_1025009731 | 3300005539 | Corn Rhizosphere | VSGDLDSAVALGSEAGFEEGGPTLVVRGKTVSGDFRIVRA* |
Ga0070732_108258241 | 3300005542 | Surface Soil | SEVPLGSEPGAANGDGPVLVVRGKTVSGDFRVFRGQ* |
Ga0066695_108874422 | 3300005553 | Soil | LDVDAGSVSGDLSSEVPLGSEPGETEDAGPTLVLRGKTVSGDFRVFRA* |
Ga0066700_101582833 | 3300005559 | Soil | GTNLDVDAGSVSGDLTSEVPLASDPGFVGDGPTLVARGKTVSGDFRVFRAV* |
Ga0066670_108125211 | 3300005560 | Soil | AAGTNLDVDANSVSGDLNSEIPLGDDVGGLEPGPTLRVRGKTVSGDFRLVRAS* |
Ga0066670_110120861 | 3300005560 | Soil | TNLDVDAGSVSGDLDSEVALGSDIGNIGPDGPMLVVRGKTVSGDFKVFRAA* |
Ga0068855_1018863442 | 3300005563 | Corn Rhizosphere | DVDANSVSGDLDSAVALGSEAGFEEGGPTLVVRGKTVSGDFRIVRA* |
Ga0068857_1008057432 | 3300005577 | Corn Rhizosphere | HLGVAEGTNVDVDANSVSGDLSSDVPLGADPTGVHTDGPTLVVRGKTVSGDFKLVRA* |
Ga0068854_1022914092 | 3300005578 | Corn Rhizosphere | NLDVDAGSVSGDLSSDVPLGSDAGNVGDGPTLVVRGKTVSGDFKVFRAA* |
Ga0066654_104583571 | 3300005587 | Soil | TNLDVDAGSVSGDLDSEVALGSDAGNLGDGPVLVVRGKTVSGDFKVFRAA* |
Ga0068852_1004274031 | 3300005616 | Corn Rhizosphere | NSVSGDLDSEVPLGSDIGLAPGPTLVVRGKTVSGDFRLVRAGS* |
Ga0066903_1017603752 | 3300005764 | Tropical Forest Soil | AGTNLDVDAGSVSGDLASEVPLGAEPGEAGDGPTLVVRGKTVSGDFKVFRAA* |
Ga0066903_1046859501 | 3300005764 | Tropical Forest Soil | VDVDAGSASGTLSSEVPLSDSPSGDPGPTLVVRSKTVSGDFRVVRAA* |
Ga0075278_10858572 | 3300005893 | Rice Paddy Soil | SGDLTSEVPLGSEPGSATGEGPTLVVRGKTVSGDFRVFRAS* |
Ga0075282_10655481 | 3300005896 | Rice Paddy Soil | TSEVPLGSDSSAGGDDLAPLVVRGKTVSGDFRVYRAA* |
Ga0066652_1016014962 | 3300006046 | Soil | EVPLGSEPGSADGDGPTLVVRGKTVSGDFRVFRAS* |
Ga0074062_116419072 | 3300006606 | Soil | EVPLGSDPGALAVEGGPTLVVRGKTVSGDFRVFRAA* |
Ga0075425_1025145431 | 3300006854 | Populus Rhizosphere | VSGDLSSEVPLGSDPGAGMAEGPTLVVRGKTVSGDFRVYRA* |
Ga0079219_108213222 | 3300006954 | Agricultural Soil | APGTNLDVDAGSVSGDLSSDVPLGSDPGAGVAEGPALVVRGKTVSGDFRVFRA* |
Ga0104323_1196343 | 3300007821 | Soil | ELGVAAGTNLDVDAGSVSGDLASEVPLGSDPDAAGGDGPALVVRGKTVSGDFRVFRGL* |
Ga0104323_1208923 | 3300007821 | Soil | ELGVAAGTNLDVDAGSVSGDLASEVPLGSDPGALGSDGPALIVRGKTVSGDFRVFRGV* |
Ga0066710_1008260112 | 3300009012 | Grasslands Soil | EAGTSLDVDAGSVSGDLSSEVPLGSEPGSADGDGSTLVVRGKTVSGDFRVFRAS |
Ga0066710_1010475372 | 3300009012 | Grasslands Soil | AGTNLDVDAGSVSGDLDSEVPLDNDPGAAGDGPLLVVRGKTVSGDFRVFRGQ |
Ga0066709_1007705731 | 3300009137 | Grasslands Soil | GTNLDVDAGSVSGDLSSEVPLGSDAASAAGHGPTLVVRGKSVSGDFRVFRAG* |
Ga0105238_119771842 | 3300009551 | Corn Rhizosphere | GDLESEVALGSDPSGTGDGPTLVVRGKTVSGDFRLVRAS* |
Ga0126379_111946251 | 3300010366 | Tropical Forest Soil | EVPLGSEASSISDDGPTLVVRGKTVSGDFRVRRAL* |
Ga0134128_110123712 | 3300010373 | Terrestrial Soil | SGELSSEVPLGSEPCEAGGDGPVLVVRGKTVSGDFRVFRAG* |
Ga0136449_1036112931 | 3300010379 | Peatlands Soil | GSNVDVDANTVSGELSSDVPLVSVPGEGGGGPTVVVRGKTVSGDFKVLRAATPEASPAKAG* |
Ga0134124_130120801 | 3300010397 | Terrestrial Soil | LDVDAGSVSGDLASDVALGSDAAAVGEGPTVVVRGKTVSGDFKLFRAA* |
Ga0137392_107119962 | 3300011269 | Vadose Zone Soil | DAGSVSGDLTSEVPLASDPGFVGDGPTLVVRGKTVSGDFRVFRAV* |
Ga0137393_112013591 | 3300011271 | Vadose Zone Soil | NLDVDAGSVSGELASEVPLGSDPDAAGEGPMLVVRGKTVSGDFRVFRGP* |
Ga0120161_10980622 | 3300012005 | Permafrost | IELGVPTGTNLDVDAGSVSGDLASEVPLGSDPDAAAGDGPALVVRGKTVSGDFRVFRGI* |
Ga0137382_102879442 | 3300012200 | Vadose Zone Soil | VSGDLSSEVPLGSDAGSAGGDGPMLVVRGKSVSGDFRVFRAS* |
Ga0137365_107654551 | 3300012201 | Vadose Zone Soil | VSGDLSSEVPLGSEPGSADGDGPTLVVRGKTVSGDFRVFRAS* |
Ga0137376_112260581 | 3300012208 | Vadose Zone Soil | SLDVDAGSVSGDLSSEVPLGSEPGSADGDGPTLVVRGKTVSGDFRVFRAS* |
Ga0137369_103863352 | 3300012355 | Vadose Zone Soil | GVEAGTNLDVDAGSVSGDLASEVPLGSEPGGAADGPTLVVRGKTVSGNFRVIRAS* |
Ga0137361_106676581 | 3300012362 | Vadose Zone Soil | TNLDVDAGSVSGELASEVPLGSDPDAAGEGPMLVVRGKTVSGDFRVFRGP* |
Ga0137394_106914671 | 3300012922 | Vadose Zone Soil | DLTSEVPLGSEPGGEPGGPMLVVRGKTVSGDFKVFRAA* |
Ga0137413_114528212 | 3300012924 | Vadose Zone Soil | DLASEAPFGSDPDVIGGGGPALVVRGKTVSGDFRVFRGL* |
Ga0134087_104553692 | 3300012977 | Grasslands Soil | TNVDVDANSVSGDLGSDVPLGSDPDGVHGEGPTLVVRGKTVSGDFRLIRAS* |
Ga0134087_107071392 | 3300012977 | Grasslands Soil | VDAGSVSGDLSSEVPLGSDAASAAGHGPTLVVRGKSVSGDFRVFRAG* |
Ga0164305_117774541 | 3300012989 | Soil | TNLDVDAGSVSGDLSSEVPLGSDPGSAEGYGPTLVVRGKTVSGDFRVFRAS* |
Ga0157373_107285681 | 3300013100 | Corn Rhizosphere | PGTSLDVDAGSVSGDLSSEVPLGSDPGAAIAAGGPTLVVRGKTVSGDFRVFRAA* |
Ga0157369_115826592 | 3300013105 | Corn Rhizosphere | VDVDANSVSGDLSSDVPLSSDPGSAGGDGPVVVVRGKTVSGDFRITRAYAA* |
Ga0157369_116280591 | 3300013105 | Corn Rhizosphere | LDSAVALGSEAGFEEGGPTLVVRGKTVSGDFRLVRAG* |
Ga0120150_11129672 | 3300013294 | Permafrost | LDVDAGSVSGDLSSEVPLGSDAASAVGDGPTLVVRGKSVSGDFRVFRAS* |
Ga0157372_102491553 | 3300013307 | Corn Rhizosphere | DAGSVSGDLSSEVPLGSEPGVADGDGPALVVRGKTVSGDFRVFRAG* |
Ga0120179_10313032 | 3300013763 | Permafrost | VDAGSVSGDLASEVPLGSDPDAAGGDGPALVVRGKTVSGDFRVFRGL* |
Ga0120158_101116841 | 3300013772 | Permafrost | VDAGSVSGDLSSEVPLGSEPGAHEGGPSLVVRGKTVSGDFRVFRAA* |
Ga0167652_10106621 | 3300015164 | Glacier Forefield Soil | DLASEVPLGSDPDAIGGSGPALVVRGKTVSGDFRVFRGL* |
Ga0187812_11300142 | 3300017821 | Freshwater Sediment | SASGDLSSEVPLSDTPGGDVGPTVVVRGNTVSGDFRVFRAA |
Ga0187824_101877922 | 3300017927 | Freshwater Sediment | TNLDVDAGSVSGDLSSEVALGSDVGEIGDGPTLVVRGKTVSGDFRVFRAA |
Ga0187819_103652872 | 3300017943 | Freshwater Sediment | DLSSEVPLSDTPGGDVGPTVVVRGNTVSGDFRVFRAA |
Ga0187785_100763561 | 3300017947 | Tropical Peatland | GSVSGDLTSEVPLGSDFGSMGDGPTLVVRGKTVSGDFKVFRAA |
Ga0187779_106157562 | 3300017959 | Tropical Peatland | VSGDLSSEVALGDSPDSTGGGPTVVVRGKTVSGDFRVFRAA |
Ga0187779_110230042 | 3300017959 | Tropical Peatland | SVSGELTSEVPLADAPVEAGDGPTVVVRGKTVSGDFRVFRAA |
Ga0187780_104993271 | 3300017973 | Tropical Peatland | TAVSGELSSEVPLASTPELVGEGDGPTVVVRGKTVSGDFHVFRAA |
Ga0187869_101722291 | 3300018030 | Peatland | AAGSSVDVDASSVSGDLSSDVPLANVPGEGESGPTVVVRGKTVSGDFKVARAA |
Ga0184618_102359392 | 3300018071 | Groundwater Sediment | NLDVDAGSVSGDLSSEVPLGSDAASAVGDGPTLVVRGKSVSGDFRVFRAG |
Ga0066667_116357992 | 3300018433 | Grasslands Soil | DAGSVSGDLTSEVPLGSDAASAAGEGPTLVVRGKSVSGDFRVFRAG |
Ga0206354_107295082 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VSGDLSSDVPLSSDPGSAGGDGPVVVVRGKTVSGDFRITRAYAA |
Ga0179589_105052461 | 3300024288 | Vadose Zone Soil | SVSGDLSSEVPLGSDPGSAEGYGPMLVVRGKTVSGDFRVFRGQ |
Ga0208563_10287272 | 3300025501 | Peatland | GSSVDVDASSVSGDLSSDVPLANVPGEGESGPTVVVRGKTVSGDFKVARAA |
Ga0209584_101524152 | 3300025878 | Arctic Peat Soil | SGDLTSEVPLGSEPGVTHDGGPMLVVRGKTISGDFRVFRAA |
Ga0207699_104907262 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | LTSEVPLGSDPDGFDNGDGPTLVVRGKTVSGDFRVFRG |
Ga0207699_107454591 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | GTSLDVDANSVSGDLDSEVALGGELEGIEGDGPTLVVRGKTVSGDFRIGRA |
Ga0207684_114183831 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | AGSVSGDLSSEVPLGSEPATGGNGPTVVVRGRTVSGDFKVFRAA |
Ga0207660_111056972 | 3300025917 | Corn Rhizosphere | SGELSSEVPLGSEPGEAGGDGPVLVVRGKTVSGDFRVFRAG |
Ga0207660_111510321 | 3300025917 | Corn Rhizosphere | VSGDIHLGVAEGTNVDVDANSVSGDLSSDVPLGADPTGVHTDGPTLVVRGKTVSGDFKLVRA |
Ga0207652_101959301 | 3300025921 | Corn Rhizosphere | GSVSGDLSSEVPLGSDPGSAEGYGPTLVVRGKTVSGDFRVFRAS |
Ga0207646_115512011 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | SVSGDLSSEVPLGSERGPASDGPTLVVRGKTVSGDFRVFRAL |
Ga0207667_121033832 | 3300025949 | Corn Rhizosphere | EPGTTLDVDANSVSGDLDSAVALGSEAGFEEGGPTLVVRGKTVSGDFRIVRA |
Ga0207702_118549952 | 3300026078 | Corn Rhizosphere | LSSEVPLGSDPGSAEGYGPTLVVRGKTVSGDFRVFRAS |
Ga0207698_101483923 | 3300026142 | Corn Rhizosphere | NSVSGDLDSEVPLGSDIGLAPGPTLVVRGKTVSGDFRLVRAGS |
Ga0209474_102021732 | 3300026550 | Soil | EVPLGSDAAAAAGEGPTLVVRGRSVSGDFRVVRAG |
Ga0208988_11581262 | 3300027633 | Forest Soil | NLDVDAGSVSGDLASEVPLGSDPDALGGDGPALVVRGKTVSGDFRVFRGL |
Ga0209580_105464531 | 3300027842 | Surface Soil | GSVSGDLTSEVPLGSEPNGFDNGDGPMLVVRGKTVSGDFRVFRG |
Ga0209701_103044881 | 3300027862 | Vadose Zone Soil | LDVDAGSVSGDLTSEVPLASDPGFVGDGPTLVVRGKTVSGDFRVFRAV |
Ga0209579_106766892 | 3300027869 | Surface Soil | DLTSEVPLGSDAGAVGDGPTLVVRGKTVSGDFKVFRAA |
Ga0265318_102418562 | 3300028577 | Rhizosphere | SDVPLASAPGESDGGGPVVIVRGKTVSGDFKVARAA |
Ga0265322_100139884 | 3300028654 | Rhizosphere | DLSSDVPLASAPDESEGGGPVVIVRGKTVSGDFKVARAA |
Ga0307280_101245962 | 3300028768 | Soil | APGTTLDVDAGSVSGDLSSEVPLGSDPGAVAVDGGPTLVVRGKTVSGDFRVFRAA |
Ga0265338_101399061 | 3300028800 | Rhizosphere | LTSEVPLGSEPGATHDGGPTLVVRGKTISGDFRVFRAA |
Ga0307305_104803142 | 3300028807 | Soil | AGSVSGDLSSEVPLGSDVASAAGDGPTLVVRGKSVSGDFRVFRAG |
Ga0307312_111852712 | 3300028828 | Soil | NLDVDAGSVSGDLDSEVPLGSEPGVGDGSGPTLVVRGKTVSGDFRVFRA |
Ga0265328_103424141 | 3300031239 | Rhizosphere | IAAGSNVDVDANSVSGDLSSEVALATDPGVAGVGDGPTVVVRGKTVSGDFRVFRAA |
Ga0265320_102510043 | 3300031240 | Rhizosphere | DLTSEVPLANDMGTLGGGPTLVVRGNTVSGDFRVFRAA |
Ga0265329_100038689 | 3300031242 | Rhizosphere | SSDVPLASAPGESDGGGPVVIVRGKTVSGDFKVARAA |
Ga0265340_100340043 | 3300031247 | Rhizosphere | AGSVSGDLTSEVPLGSEPGATHDGGPTLVVRGKTISGDFRVFRAA |
Ga0265339_103740962 | 3300031249 | Rhizosphere | DLSSDVPLASAPGESDGGGPVVIVRGKTVSGDFKVARAA |
Ga0265331_101341091 | 3300031250 | Rhizosphere | DVPLASAPGESDGGGPVVIVRGKTVSGDFKVARAA |
Ga0265316_107829021 | 3300031344 | Rhizosphere | GDLSSDVPLASAPGESDGGGPVVIVRGKTVSGDFKVARAA |
Ga0306917_111327301 | 3300031719 | Soil | LSSEVPLSGTRNDGPGPTLVVRSKTVSGDFRVVRAA |
Ga0307477_103519742 | 3300031753 | Hardwood Forest Soil | PGTNLDVDAGSVSGDLTSEVPLGSDAGAVGDGPTLVVRGRTVSGDFKVFRAA |
Ga0307477_106789272 | 3300031753 | Hardwood Forest Soil | DVDAASASGELSSEVPLSGTPGDNAGPTVVVRGNTVSGDFRVFRAA |
Ga0308175_1006484181 | 3300031938 | Soil | ANSVSGDLESDVPLASDPSGANGEGPTLVVRGKTVSGDFRLVRG |
Ga0308174_104275422 | 3300031939 | Soil | SGDIRVGVAAGTNVDVDANSVSGDLDSEVPLGTDIGLAPGPTLVVRGKTVSGDFRLVRAG |
Ga0306920_1042696622 | 3300032261 | Soil | LSSEVPLSGERSEGPGPTLVVRSKTVSGDFRVVRAA |
Ga0306920_1043299292 | 3300032261 | Soil | GDLTSEVPLSAVPSGEADPTLVVRGKTVSGDVRLVRAG |
Ga0335080_102597983 | 3300032828 | Soil | SGELSSEVPLASSPELAGAGDGPTVVVRGKTVSGDFHVFRAA |
Ga0335083_103205071 | 3300032954 | Soil | SSDVPLTSDPGEGGDGPTVILRGKTVSGDLKVFRSI |
Ga0335083_108073272 | 3300032954 | Soil | TSEVALADTPGAAGAGPTVVVRGKTVSGDFRVFRAA |
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