Basic Information | |
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Family ID | F076534 |
Family Type | Metagenome |
Number of Sequences | 118 |
Average Sequence Length | 40 residues |
Representative Sequence | LNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.85 % |
% of genes near scaffold ends (potentially truncated) | 98.31 % |
% of genes from short scaffolds (< 2000 bps) | 94.92 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (67.797 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.051 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.508 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (39.831 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 44.93% β-sheet: 0.00% Coil/Unstructured: 55.07% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Freshwater Sediment Iron-Sulfur Acid Spring Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Grass Soil Surface Soil Agricultural Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Palsa Arabidopsis Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FE1_06959070 | 2189573002 | Grass Soil | PPILDHKHSIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAH |
Ga0062387_1011729132 | 3300004091 | Bog Forest Soil | ILSQKFSIADPMFWSNSVAGGVLIALAAVALAAVAMRRPARR* |
Ga0066388_1029282713 | 3300005332 | Tropical Forest Soil | PILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0070709_115107521 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | ILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0070714_1011111651 | 3300005435 | Agricultural Soil | ILNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR* |
Ga0070713_1005584373 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | TRKHPIADSMYWSNSWAGGVLIALAAASLAVVALRWPARR* |
Ga0070706_1006856711 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | SHKHPIADSMYWSNSWAGGVLIALAAASLAAVVLRWPTRG* |
Ga0070706_1009305701 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | HKHPIADSMYWSNSWAGGVLIALAAASLAAIAPRRPARR* |
Ga0070706_1009785441 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | ILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRPAR* |
Ga0070699_1010235001 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | LDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRPAR* |
Ga0070730_105706051 | 3300005537 | Surface Soil | LSQKFSIADPMFWSNSWAGGVLIALAALGLTAVAMRRPARR* |
Ga0070733_111013111 | 3300005541 | Surface Soil | ILSQKHPIADAMYWSNSWAGGLLIVVAAAGLAAVALRRPARR* |
Ga0070665_1017493312 | 3300005548 | Switchgrass Rhizosphere | GPILNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR* |
Ga0070762_107271283 | 3300005602 | Soil | AGPILSQKFSIADPMFWSNSVAGGVLIAVAALGLTAVAMRRPARR* |
Ga0070762_111020631 | 3300005602 | Soil | FTIADPMFWSNSWAGGVLIALAAAGLAAVGLRRPARR* |
Ga0068856_1004074494 | 3300005614 | Corn Rhizosphere | DHKHPIAHAMYWSNSFSGGVLIALTAAGLGFAALRRTAR* |
Ga0068866_107739561 | 3300005718 | Miscanthus Rhizosphere | DHKHPIAHAMYWSNSFSGGVLIAVAAAGLGFAALRRTAR* |
Ga0066903_1075096031 | 3300005764 | Tropical Forest Soil | SPPILDHKHPIAPAMYWSNSFSGGALIALAAAGLGFAALRRTAR* |
Ga0070717_110258461 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | LDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0070715_107154221 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | PPILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0070716_1013313411 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | NHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR* |
Ga0070712_1011294491 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | ADSMYWSNSWAGGVLIALAAASLAAIALRWPARR* |
Ga0070765_1005587383 | 3300006176 | Soil | IADPMFWSNSWAGGVLIALAAAGLAAVGLRRPARR* |
Ga0070765_1008837123 | 3300006176 | Soil | KHPIADSMYWSNSWAGGVLIALAAASLAAITITLRRPARR* |
Ga0070765_1012447263 | 3300006176 | Soil | PILSQKFSIADPMFWSNSVAGGVLIAVAALGLTAVAMRRPARR* |
Ga0075425_1002267501 | 3300006854 | Populus Rhizosphere | KHSIAHAMYWSNSFSGGVLIALAAADLGFAALRRTAR* |
Ga0073928_109529491 | 3300006893 | Iron-Sulfur Acid Spring | KHPIADSMFWSNSWTGGVLIALAILGLAAAATRRPARS* |
Ga0075426_100947271 | 3300006903 | Populus Rhizosphere | MPSFSDSMYWPNSLAGGVLIALAAASLAVVALRRP |
Ga0099829_113137711 | 3300009038 | Vadose Zone Soil | ADSMYWSNSWAGGVLIALAAASLAAVALRGPARR* |
Ga0105240_116536241 | 3300009093 | Corn Rhizosphere | IAHAMYWSNSFSGGVLIAVAAAGLGFAALRRTAR* |
Ga0105245_114070521 | 3300009098 | Miscanthus Rhizosphere | ADSMYWSSSWAGGVLIALAAASLAVVALRWPARR* |
Ga0126384_106777023 | 3300010046 | Tropical Forest Soil | HPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAL* |
Ga0126373_119093112 | 3300010048 | Tropical Forest Soil | QKDAIADPMYWSNSWAGGLLIALAAAGLAAVALRRPARR* |
Ga0134080_106357861 | 3300010333 | Grasslands Soil | ILDHKHPIAHAMYWSNSFSGGVLITLAAAGLGFAALRRTAR* |
Ga0126370_100660925 | 3300010358 | Tropical Forest Soil | KFPIAHPMYWSNSWSGGVLMALALAGLAVLLRPAR* |
Ga0126372_107698891 | 3300010360 | Tropical Forest Soil | HPIAHAMYWSNSFSGGVLIALAAAGLGFAALRLTAR* |
Ga0126378_127843641 | 3300010361 | Tropical Forest Soil | IICPPILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0134128_116749891 | 3300010373 | Terrestrial Soil | IADSMYWSNSWAGGVLIALAAASLAAVALRRSAHR* |
Ga0134128_118207471 | 3300010373 | Terrestrial Soil | IADSMYWSNSWAGGVLIALAAASLAAVALRRPARR* |
Ga0137379_113122841 | 3300012209 | Vadose Zone Soil | IAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAH* |
Ga0137384_100183031 | 3300012357 | Vadose Zone Soil | PIADPMYWSNSWAGAVLIALAAAGLAAVALPRPARR* |
Ga0137398_108133431 | 3300012683 | Vadose Zone Soil | ILNHKHPIADSMYWSDSWAGGVLIALAAASLAAVALRRPARR* |
Ga0137398_109647541 | 3300012683 | Vadose Zone Soil | ADPMFWSNSVAGGVLIVLAATGLGAVALRRPVGR* |
Ga0137407_116887101 | 3300012930 | Vadose Zone Soil | KHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0126375_103052781 | 3300012948 | Tropical Forest Soil | APPILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR* |
Ga0163163_117932212 | 3300014325 | Switchgrass Rhizosphere | DHKHPIAHAMYWSNSFSGGVLIALAAAGLGFATLRRTAR* |
Ga0132258_129148743 | 3300015371 | Arabidopsis Rhizosphere | MISPPILYHKHPIAHAMHWSDSFSGGVLIALTAAGLGFAALRRTAR* |
Ga0182033_117160171 | 3300016319 | Soil | LDHKHPIAHAMYWSNGFSGGVLIALAAAGLGFAALRRTAR |
Ga0182035_115059312 | 3300016341 | Soil | LNHKHPIADSMYWSNSWAGGALIALAAASLAAIAPRRPARR |
Ga0182032_110817921 | 3300016357 | Soil | DHKHPIAHAMYWSNGFSGGVLIALAAAGLGFAALRRTAR |
Ga0182039_119885041 | 3300016422 | Soil | PIADPMFWSNSWAGGVLIAVAAAGLAAVAMRRPARR |
Ga0187812_11501591 | 3300017821 | Freshwater Sediment | LDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0066662_125684871 | 3300018468 | Grasslands Soil | LDHKHPIAHAMYWSNSFSGGVLIALATAGLGFAALRRTGR |
Ga0179592_102604892 | 3300020199 | Vadose Zone Soil | LNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Ga0210407_103257053 | 3300020579 | Soil | ILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAL |
Ga0210396_109665871 | 3300021180 | Soil | LNRKHPIADSMYWSNSWAGGVLIALAAVTLRWPAPR |
Ga0210393_112228592 | 3300021401 | Soil | AGPILSSKFTIADPMFWSNSLAGGVLIVLAAAGLGAVALRRPAGR |
Ga0210385_108431563 | 3300021402 | Soil | PILSQKFSIADPMFWSNSVAGGVLIAVAALGLTAVAMRRPARR |
Ga0210397_101577063 | 3300021403 | Soil | IADSMFWSNSWAGGVLIALAILGLAAAAMRRPARS |
Ga0210389_110113151 | 3300021404 | Soil | KHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0210387_109049633 | 3300021405 | Soil | GPILNRKHPIADSMYWSNSWAGGVLIALAAVTLRWPAPR |
Ga0210383_107053983 | 3300021407 | Soil | GPILSQKFSIADPMFWSNSVAGGVLIAVAAVGLAAVAMRRPARR |
Ga0210402_108960561 | 3300021478 | Soil | PAIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0210410_105161213 | 3300021479 | Soil | ILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0126371_128081692 | 3300021560 | Tropical Forest Soil | WLIISSPILDHKHPIAHAMYWSNSFSGGVLIAVAAAGLGFAALRRTAR |
Ga0207692_103416711 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | LSQKFAITDSMYWSNSWAGGALIVLAAASLAAIALRRPARR |
Ga0207705_112095281 | 3300025909 | Corn Rhizosphere | HKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0207663_104430382 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | QKFAITDSMYWSNSWAGGALIVLAAASLAAIALRRPARR |
Ga0207646_102715901 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | HILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRPAR |
Ga0207646_104106743 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | PVLNQKHPVADSMYWSNSWAGAVLIALAAAGLAAVALRRPVRR |
Ga0207700_103761071 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | PIAHAMYWSNSFSGGVLIALTAAGLGFAALRRTAR |
Ga0207667_120199972 | 3300025949 | Corn Rhizosphere | YRHAIADSMYWSNSWAGGVLIALAAASLAVVTLRWSDRR |
Ga0257160_10665302 | 3300026489 | Soil | LGVWLIVAGPILSQKFSIADPMFWSNSVAGGVLIAVAAIGLAAVAMRRPARR |
Ga0209648_105958531 | 3300026551 | Grasslands Soil | VLNQKHPIADPMYWSNSWAGAVLIALAAAGLAAVALPRPARR |
Ga0209525_10744043 | 3300027575 | Forest Soil | LAGPILAQKFSIADPMFWSNSVAGGVLIAVAALGLTAVAMRRPARR |
Ga0209178_13724341 | 3300027725 | Agricultural Soil | LTRKHPIADSMYWSNSWAGGVLIALAAASLAAIALRRPVRR |
Ga0209180_105564863 | 3300027846 | Vadose Zone Soil | KHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Ga0209167_107496431 | 3300027867 | Surface Soil | ILSQKHPIADAMYWSNSWAGGLLIVVAAAGLAAVALRRPARR |
Ga0209488_101736541 | 3300027903 | Vadose Zone Soil | ILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFATLRRTAR |
Ga0308309_106949903 | 3300028906 | Soil | LIADSMYWSNSVAGAVLIAVAAAGLAAVAMRRPARR |
Ga0308309_109146431 | 3300028906 | Soil | HPITDSMFWSNSWAGALLIALAAIGLATVAMRRPARR |
Ga0302182_103970802 | 3300030054 | Palsa | KNPITDSMFWSNSWAGGVLIAVAAIGLAAAAMRRPARR |
Ga0318534_106201062 | 3300031544 | Soil | PILSQKHPIADPMFWSNSWAGGVLIAVAAAGLAAVAMRRPARR |
Ga0318571_100252884 | 3300031549 | Soil | ILHHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Ga0318574_107554412 | 3300031680 | Soil | ILNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Ga0318572_105992181 | 3300031681 | Soil | LSQKYPIADPMYWSNSWAGGVLIAVAIAGLAAVAMRRPARR |
Ga0318496_105286242 | 3300031713 | Soil | VSPPILDQKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0307474_104101991 | 3300031718 | Hardwood Forest Soil | SKFTIADPMFWSNSVAGGVLIVLAAAGLGAVALRRPAGR |
Ga0318502_104286751 | 3300031747 | Soil | IAGPILNHKHPIADSMYWSNSWAGGVLIALAAASLAAIALRRPARR |
Ga0318492_105147501 | 3300031748 | Soil | ILNHKHPIAGSMYWSNSWAGGALIALAAASLAAVALRRPARR |
Ga0318543_103238612 | 3300031777 | Soil | PILNQKHPIADPMYWSNSWAGGVLIAVAIAGLAAVAMRRPARR |
Ga0318498_100594824 | 3300031778 | Soil | PIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0318497_100504781 | 3300031805 | Soil | LIISPPILDHKHPIAHAMYWSNSFSGGALIALAAAGLGFAALRRTAR |
Ga0307473_105800983 | 3300031820 | Hardwood Forest Soil | LIISPPILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0318564_101438473 | 3300031831 | Soil | NHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRRPARR |
Ga0318564_101584601 | 3300031831 | Soil | CPPILDHKHPIAHAMYWSNSFSGGALIALAAAGLGFAALRRTAR |
Ga0318564_102560923 | 3300031831 | Soil | EPILNHKHPIADSMYWSNSWAGGVLIALAAASLAAIALRRPARR |
Ga0318517_102946281 | 3300031835 | Soil | KHAIADSMYWSNSWAGGALIALAAASLAAVALRRPARR |
Ga0318511_103275401 | 3300031845 | Soil | AGPILNQKHPIADPMYWSNSWAGGVLIAVAIAGLAAVAMRRPARR |
Ga0318512_102863203 | 3300031846 | Soil | ILDHKYPIAHAMYWSNSFSGGVLIALAAAGLGLAALARTAR |
Ga0318551_105998642 | 3300031896 | Soil | LNHKHAIADSMYWSNSWAGGALIALAAASLAAVALRRPARR |
Ga0318520_104244533 | 3300031897 | Soil | NHKHPIADSMYWSNSWAGGVLIALAAASLAAIALRRPARR |
Ga0318520_108234731 | 3300031897 | Soil | GPILSQKHAIADSMYWSNSWAGAVLIALAATSVAAIALRRPARR |
Ga0306926_116377473 | 3300031954 | Soil | PIAHAMYWSNSFSGGALIALAAAGLGFAALRRTAR |
Ga0307479_115414672 | 3300031962 | Hardwood Forest Soil | KHPVADSMYWSNSWAGGVLVALAAASLTAVALRRPARR |
Ga0318562_106859262 | 3300032008 | Soil | HPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0318562_107205172 | 3300032008 | Soil | ILSQKHAIADSMYWSNSWAGAVLIALAAASVAAIALRRPARR |
Ga0318569_100948834 | 3300032010 | Soil | IAGPILNHKHPIADSMYWSNSWAGGVLIALAAASLAAVALRPARR |
Ga0318569_103123953 | 3300032010 | Soil | PIAHAMYRSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0318556_100905991 | 3300032043 | Soil | IISPPILDHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAAPRRNAR |
Ga0318524_101193643 | 3300032067 | Soil | ILDQKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0318524_107198501 | 3300032067 | Soil | ILNQKHPIADPMYWSNSWAGGVLIALAVAGLAAAALSRPARR |
Ga0318553_100227493 | 3300032068 | Soil | IIAGPILSQKHPIADPMFWSNSWAGGVLIAVAAAGLAAVAMRRPARR |
Ga0318553_101719323 | 3300032068 | Soil | ILNQKHPIADPMYWSNSWAGGVLIAVAIAGLAAVAMRRPARR |
Ga0306924_105635761 | 3300032076 | Soil | KHPIAHAMYWSNSFSGGALIALAAAGLGFAALRRTAR |
Ga0306920_1025343631 | 3300032261 | Soil | LSQKYSIADPLYWSNSWAGGVLIAVAAVGLAVVAMRRPARR |
Ga0306920_1027960982 | 3300032261 | Soil | DHKHPIAHAMYWSNSFSGGVLIALAAAGLGFAALRRTAR |
Ga0335074_112252111 | 3300032895 | Soil | TIADPMFWSNSVAGGVLIVLAAAGLGAVALRRPAAR |
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