Metagenome Family F076433

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076433
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	46 residues
Representative Sequence	MGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS
Number of Associated Samples	98
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.39 %
% of genes near scaffold ends (potentially truncated)	57.63 %
% of genes from short scaffolds (< 2000 bps)	88.14 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.831 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.508 % of family members)
Environment Ontology (ENVO)	Unclassified (44.915 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.627 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.68% β-sheet: 0.00% Coil/Unstructured: 74.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00857	Isochorismatase	11.86
PF01594	AI-2E_transport	5.08
PF00719	Pyrophosphatase	4.24
PF05974	DUF892	3.39
PF01022	HTH_5	2.54
PF03466	LysR_substrate	2.54
PF03737	RraA-like	1.69
PF01925	TauE	0.85
PF05231	MASE1	0.85
PF05532	CsbD	0.85
PF00343	Phosphorylase	0.85
PF02811	PHP	0.85
PF03631	Virul_fac_BrkB	0.85
PF02446	Glyco_hydro_77	0.85
PF01066	CDP-OH_P_transf	0.85
PF03781	FGE-sulfatase	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	11.86
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	11.86
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	5.08
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	4.24
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	3.39
COG0684	RNA degradosome component RraA (regulator of RNase E activity)	Translation, ribosomal structure and biogenesis [J]	1.69
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.85
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.85
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.85
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.85
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.85
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.85
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.85
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.85
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.85
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.85
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.83 %
Unclassified	root	N/A	10.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.83 %
Unclassified	root	N/A	10.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.83 %
Unclassified	root	N/A	10.17 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	65.25 %
Unclassified	root	N/A	10.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	65.25 %
Unclassified	root	N/A	10.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	61.86 %
Unclassified	root	N/A	10.17 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	61.86 %
Unclassified	root	N/A	10.17 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102072161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1400	Open in IMG/M
3300005167\|Ga0066672_10060888	All Organisms → cellular organisms → Bacteria	2201	Open in IMG/M
3300005167\|Ga0066672_10165368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1394	Open in IMG/M
3300005171\|Ga0066677_10449877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300005174\|Ga0066680_10329812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	974	Open in IMG/M
3300005175\|Ga0066673_10176385	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1205	Open in IMG/M
3300005175\|Ga0066673_10276202	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300005179\|Ga0066684_10006299	All Organisms → cellular organisms → Bacteria	5403	Open in IMG/M
3300005179\|Ga0066684_10393033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	930	Open in IMG/M
3300005179\|Ga0066684_10586187	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300005179\|Ga0066684_10762432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300005179\|Ga0066684_10992658	Not Available	542	Open in IMG/M
3300005179\|Ga0066684_11004542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300005180\|Ga0066685_10037611	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300005181\|Ga0066678_10052534	All Organisms → cellular organisms → Bacteria	2329	Open in IMG/M
3300005184\|Ga0066671_10192900	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300005186\|Ga0066676_10651598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300005187\|Ga0066675_10154287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1578	Open in IMG/M
3300005187\|Ga0066675_11319346	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300005354\|Ga0070675_102228878	Not Available	504	Open in IMG/M
3300005434\|Ga0070709_11510054	Not Available	546	Open in IMG/M
3300005435\|Ga0070714_101534451	Not Available	651	Open in IMG/M
3300005436\|Ga0070713_101608797	Not Available	631	Open in IMG/M
3300005440\|Ga0070705_100712242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	790	Open in IMG/M
3300005447\|Ga0066689_10213866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1174	Open in IMG/M
3300005451\|Ga0066681_10136645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1432	Open in IMG/M
3300005454\|Ga0066687_10043027	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2063	Open in IMG/M
3300005545\|Ga0070695_100498155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	942	Open in IMG/M
3300005552\|Ga0066701_10149974	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300005554\|Ga0066661_10651732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300005555\|Ga0066692_10300473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1017	Open in IMG/M
3300005556\|Ga0066707_10026851	All Organisms → cellular organisms → Bacteria	3135	Open in IMG/M
3300005569\|Ga0066705_10818988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300006173\|Ga0070716_100233612	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300006791\|Ga0066653_10138736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1167	Open in IMG/M
3300006791\|Ga0066653_10595720	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	561	Open in IMG/M
3300006794\|Ga0066658_10711050	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006796\|Ga0066665_11613050	Not Available	511	Open in IMG/M
3300006800\|Ga0066660_10910202	Not Available	715	Open in IMG/M
3300006904\|Ga0075424_101348156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300007076\|Ga0075435_100884203	Not Available	779	Open in IMG/M
3300007740\|Ga0104326_133700	All Organisms → cellular organisms → Bacteria	5491	Open in IMG/M
3300009137\|Ga0066709_101913413	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	825	Open in IMG/M
3300009174\|Ga0105241_12272062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300009176\|Ga0105242_10784163	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	942	Open in IMG/M
3300010323\|Ga0134086_10136246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	889	Open in IMG/M
3300010325\|Ga0134064_10071353	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300010326\|Ga0134065_10084602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1031	Open in IMG/M
3300010335\|Ga0134063_10122131	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300010335\|Ga0134063_10769893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300010400\|Ga0134122_11170031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767	Open in IMG/M
3300010400\|Ga0134122_11410545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300010401\|Ga0134121_11851744	Not Available	631	Open in IMG/M
3300012198\|Ga0137364_10528613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	887	Open in IMG/M
3300012199\|Ga0137383_10796644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	690	Open in IMG/M
3300012200\|Ga0137382_10283394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1153	Open in IMG/M
3300012201\|Ga0137365_10255822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1302	Open in IMG/M
3300012201\|Ga0137365_11249353	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300012207\|Ga0137381_10373791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1243	Open in IMG/M
3300012208\|Ga0137376_10253818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1525	Open in IMG/M
3300012208\|Ga0137376_10402565	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300012209\|Ga0137379_10728698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	897	Open in IMG/M
3300012210\|Ga0137378_10038456	All Organisms → cellular organisms → Bacteria	4273	Open in IMG/M
3300012210\|Ga0137378_10173353	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300012211\|Ga0137377_10785613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	885	Open in IMG/M
3300012212\|Ga0150985_107514175	Not Available	515	Open in IMG/M
3300012285\|Ga0137370_10611371	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300012350\|Ga0137372_10017354	All Organisms → cellular organisms → Bacteria	6802	Open in IMG/M
3300012350\|Ga0137372_10163743	All Organisms → cellular organisms → Bacteria	1806	Open in IMG/M
3300012350\|Ga0137372_11202837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300012354\|Ga0137366_10248059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1320	Open in IMG/M
3300012897\|Ga0157285_10097011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300012918\|Ga0137396_10156186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1664	Open in IMG/M
3300012923\|Ga0137359_10223102	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1683	Open in IMG/M
3300012929\|Ga0137404_10101064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2327	Open in IMG/M
3300012955\|Ga0164298_10217954	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1128	Open in IMG/M
3300012957\|Ga0164303_10337080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	905	Open in IMG/M
3300012960\|Ga0164301_10996192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300012975\|Ga0134110_10568067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300012977\|Ga0134087_10059119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1529	Open in IMG/M
3300012977\|Ga0134087_10800229	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300013297\|Ga0157378_12903429	Not Available	531	Open in IMG/M
3300014157\|Ga0134078_10275141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	715	Open in IMG/M
3300015357\|Ga0134072_10072526	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300018000\|Ga0184604_10075486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	994	Open in IMG/M
3300018027\|Ga0184605_10065565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1565	Open in IMG/M
3300018051\|Ga0184620_10143638	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300018066\|Ga0184617_1012831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1717	Open in IMG/M
3300018071\|Ga0184618_10356019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300018431\|Ga0066655_10072771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1848	Open in IMG/M
3300018433\|Ga0066667_10077710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2126	Open in IMG/M
3300018433\|Ga0066667_10125644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1762	Open in IMG/M
3300018468\|Ga0066662_11450140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300018482\|Ga0066669_10135729	All Organisms → cellular organisms → Bacteria	1782	Open in IMG/M
3300019878\|Ga0193715_1067248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	756	Open in IMG/M
3300019879\|Ga0193723_1039650	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1402	Open in IMG/M
3300019882\|Ga0193713_1077085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	940	Open in IMG/M
3300019890\|Ga0193728_1052938	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300020015\|Ga0193734_1025735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1110	Open in IMG/M
3300021411\|Ga0193709_1013089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2051	Open in IMG/M
3300021418\|Ga0193695_1004512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2603	Open in IMG/M
3300025899\|Ga0207642_10888403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300025900\|Ga0207710_10474368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300025918\|Ga0207662_10922379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300026295\|Ga0209234_1102656	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300026300\|Ga0209027_1053722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1508	Open in IMG/M
3300026312\|Ga0209153_1157236	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300026314\|Ga0209268_1030759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1845	Open in IMG/M
3300026316\|Ga0209155_1107646	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300026326\|Ga0209801_1216372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	753	Open in IMG/M
3300026326\|Ga0209801_1354550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300026342\|Ga0209057_1206403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300026538\|Ga0209056_10694979	Not Available	514	Open in IMG/M
3300026548\|Ga0209161_10103951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1707	Open in IMG/M
3300028536\|Ga0137415_10476562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
3300028536\|Ga0137415_10853957	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	720	Open in IMG/M
3300028811\|Ga0307292_10541134	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300028881\|Ga0307277_10043138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1824	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.37%
Host-Associated	Host-Associated	7.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.14%
Plants	Host-Associated → Plants	7.63%
Aquatic	Environmental → Aquatic	4.24%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.93%
Sediment	Environmental → Aquatic → Sediment	4.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.81%
Loam	Environmental → Terrestrial → Soil → Loam	9.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.51%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.47%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.69%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1020721612	3300000956	Soil	MGELHLVLFTNGERADLFGSLGGRPSLALELLDLALAKFQFDLTFS*
Ga0066672_100608881	3300005167	Soil	MGELHLVLFPDGQRACLLRPLGGRPSLGLDLLDLALAEFQFDLTFS*
Ga0066672_101653682	3300005167	Soil	MGELHLVLFPDGERACLLRPLGGRPSPGLDLLDLTLAKFQLDLALS*
Ga0066677_104498772	3300005171	Soil	MGELHLVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFDVTLS*
Ga0066680_103298122	3300005174	Soil	MGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066673_101763851	3300005175	Soil	MGELHLVLFTDGERANLFVSLGGRPSLGLDLLDLTLVKFQLDLTLS*
Ga0066673_102762021	3300005175	Soil	MGELHLVLFPNGERGGLSRSLGGRPSPGLDLLDLTLAKFQ
Ga0066684_100062996	3300005179	Soil	MGELHLVLFTDGERADLFGSMGGRPALGLDLLDLALAKFQFDLTFSEQGL*
Ga0066684_103930332	3300005179	Soil	WTRFTARIGELHLVLFPNRERSCLFDSLGGRTSTGLDLLDLALAEFQFGLTFS*
Ga0066684_105861871	3300005179	Soil	VLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFDVTLS*
Ga0066684_107624321	3300005179	Soil	MGELHLVLFPDSERGDLPGSLGGRPSPGLELLDLALVEFQFDLTFS*
Ga0066684_109926581	3300005179	Soil	ARIGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066684_110045421	3300005179	Soil	MGELHVVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFDVTL
Ga0066685_100376113	3300005180	Soil	MGELHLVLFPDGERACLSRSLGRRTPLGLDLLDLALAKFQFALTFS*
Ga0066678_100525342	3300005181	Soil	MGELHVVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFDVTLS*
Ga0066671_101929003	3300005184	Soil	RIGELHLVLFPNRERACLFAPLVGRPSPGLDLLDFALAKFQFDLTLS*
Ga0066676_106515981	3300005186	Soil	MGELHLVLFPNGERGGLSRSLGGRPSPGLDLLDLTLAKFQFRLTFS*
Ga0066675_101542873	3300005187	Soil	MGELHLVLFIDGERADLFGSMGGRPALGLDLLDLALAKFQFDLTFSEQGL*
Ga0066675_113193461	3300005187	Soil	AARWTRFSSRMGELHLVLFPDGERACLSRSLGRRTPLGLDLLDLALAKFQFALTFS*
Ga0070675_1022288781	3300005354	Miscanthus Rhizosphere	VLFPNSERARLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0070709_115100541	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ELHLVLFPNGERARLFAPLVGRPSLGLDLLDLALVKFQFDLTLS*
Ga0070714_1015344512	3300005435	Agricultural Soil	LVLFPNGERARLFAPLVGRPSLGLDLLDLALVKFQFDLTLS*
Ga0070713_1016087972	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	IGELHLVLFPNGERARLFAPLVGRPSLGLDLLDLALVKFQFDLTLS*
Ga0070705_1007122422	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	IGELHLVLFPNSERARLFAPFVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066689_102138663	3300005447	Soil	MGELHLVLFPDGERACLLRPLGGRPSLGLDLLDLTLAKFQLDLALS*
Ga0066681_101366453	3300005451	Soil	MGELHLVPFPDGECTDLFGSLGGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066687_100430271	3300005454	Soil	FTARIGELHLVLFPNGERACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0070695_1004981551	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKF*
Ga0066701_101499742	3300005552	Soil	MGELHLVLFPDGERGCLSRSLGGRPSLGLDLLDLALAKFQFDLTFS*
Ga0066661_106517322	3300005554	Soil	MGELHVVLFTDGERACLLRPLGGRPSPGLDLLDLTLAKFQLDLALS*
Ga0066692_103004731	3300005555	Soil	VLFPDGERTDLFGSLGGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066707_100268515	3300005556	Soil	MGELHLVLFPDGECTDLFGSLGGRPSPGLDLLDLA
Ga0066705_108189881	3300005569	Soil	MGELHLVLFADGERACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0070716_1002336123	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGELHLVLFPDGERACLFAPLVGRPSPGLELLDLALAKFQFDLTFS*
Ga0066653_101387362	3300006791	Soil	MGELHLVLFPDGECTDLFGSLGGRPSPGLDLLDLALAKFQFDLTLS*
Ga0066653_105957201	3300006791	Soil	HLVLFTDGERANLFVSLGGRPSLGLDLLDLTLVKFQLDLTLS*
Ga0066658_107110501	3300006794	Soil	TRLSSRMGELHLVLFPDGQRACLLRPLGGRPSLGLDLLDLALAEFQFDLTFS*
Ga0066665_116130501	3300006796	Soil	LVLFPNRERSCLFDSLGGRTSTGLDLLDLALAEFQFGLTFS*
Ga0066660_109102022	3300006800	Soil	AGWTRFTARIGELHLVLFPNRERSCLFDSLGGRTSTGLDLLDLALAQFQFGLTFS*
Ga0075424_1013481561	3300006904	Populus Rhizosphere	CDAGWTRFTSRIDELHLVLFPNGERACLFAPLDGRPSAGLDLLDVALAKFQFDLTLS*
Ga0075435_1008842031	3300007076	Populus Rhizosphere	RIGELHLVLFPNGERACLFGPLVGRPSPGLDLLDLALAKFQFHLTLS*
Ga0104326_1337005	3300007740	Soil	MDELHLVLFANGKRGCLFCSLGGRPSPGLDLLDLALAKFQFDLTFSE*
Ga0066709_1019134132	3300009137	Grasslands Soil	GQRACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0105241_122720622	3300009174	Corn Rhizosphere	WTRFTARIGELHLVLFPNGERARLFAPLVGRPSLGLDLLDLALVKFQFDLTLS*
Ga0105242_107841631	3300009176	Miscanthus Rhizosphere	TRFTARIGELHLVLFPNSERARLFAPLVGRPSPGLDLLDPALAKFQFDLTLS*
Ga0134086_101362461	3300010323	Grasslands Soil	GHFRAFSKRDARWTRFTPRIGELHLVLFSNGQRACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0134064_100713531	3300010325	Grasslands Soil	TRISELHLVLFPNRERACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0134065_100846021	3300010326	Grasslands Soil	MGELHLVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFD
Ga0134063_101221312	3300010335	Grasslands Soil	KRDARWTRFTPRIGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0134063_107698932	3300010335	Grasslands Soil	NRERSCLFDSLGGRTSTGLDLLDLALAEFQFGLTFS*
Ga0134122_111700311	3300010400	Terrestrial Soil	VLFPNGERACLFALLVGRPSPELDLLDLALAKFQFDLTL
Ga0134122_114105451	3300010400	Terrestrial Soil	HLVLFPNGERACLFALLVGRPSPELDLLDLALAKFQFDLTLR*
Ga0134121_118517442	3300010401	Terrestrial Soil	ERARLFAPLVGRPSLGLDLLDLALVKFQFDLTLS*
Ga0137364_105286132	3300012198	Vadose Zone Soil	MGELHVVFFPNGQRADLFGSLGGRSSFGLDLLDLALAKFQFDLTFS*
Ga0137383_107966441	3300012199	Vadose Zone Soil	MGELHLVLFTDGERANLFGSLGGRPSLGLDLLDLALAKFQLDLTLS*
Ga0137382_102833942	3300012200	Vadose Zone Soil	MGEPHLVFFPNGQRADLFGSLGGRSSFGLDLLDLALAEFQFDLTFG*
Ga0137365_102558222	3300012201	Vadose Zone Soil	MGELHLMLFPNGERACLSHSLGGRASLRLDLLDLALAEFQFDLTFS*
Ga0137365_112493532	3300012201	Vadose Zone Soil	MGELHLVLFANGERADLFGSLGGRPSLGLDLLDLALVKFQLELTFS*
Ga0137381_103737911	3300012207	Vadose Zone Soil	MGELHLVLFANGERADLFGSLGGRPSLGLDLLDLALAKFQFDLTLS*
Ga0137376_102538184	3300012208	Vadose Zone Soil	ARIGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKF*
Ga0137376_104025652	3300012208	Vadose Zone Soil	MGELHLVFFPNGQRADLFGSLGGRSSFGLDLLDLALAKFQFDLTFS*
Ga0137379_107286982	3300012209	Vadose Zone Soil	MGELHLVLFTDGERANLFGSLGGRPSLGLDLLDLTLVKFQLDLTLS*
Ga0137378_100384567	3300012210	Vadose Zone Soil	MGELHLVLFANGERADLFGSLGGRPSLGLDLLDLALAKFQLDLTLS*
Ga0137378_101733533	3300012210	Vadose Zone Soil	MGELHLVLFANGERADLFGSLGGRPSLQLDLLDLALAKFQFDLTFS*
Ga0137377_107856132	3300012211	Vadose Zone Soil	MDELHLVLFTDGERADLFGSLGGRPSLGLDLLDLTLVKFQLDLTLS*
Ga0150985_1075141753	3300012212	Avena Fatua Rhizosphere	PNGERACLFGSLGRRTSPGLELLDLALAKFQFDLTLS*
Ga0137370_106113713	3300012285	Vadose Zone Soil	LVLFIDGERADLFGSMGGRPALGLDLLDLALAKFQFDLTFSEQGL*
Ga0137372_100173544	3300012350	Vadose Zone Soil	MGELHLVLFPNGERACLSHSLGGRASLRLDLLDLALAEFQFDLTFS*
Ga0137372_101637433	3300012350	Vadose Zone Soil	VLFANGERADLFGSLGGRPSLQLDLLDLALAKFQFDLTFS*
Ga0137372_112028371	3300012350	Vadose Zone Soil	MGELHLVLFTDGERARLFRSLGGRPSLGLDLLDLTLAKFQFHLTLS*
Ga0137366_102480593	3300012354	Vadose Zone Soil	MGELHLVLFANGECADLFGSLGGRPWLGLDLLDLALAKFQLDLTLS*
Ga0157285_100970112	3300012897	Soil	IGELHLVLFPNSERARLFAPLVGRPSPGLDLLDLALVKFQFDLTLS*
Ga0137396_101561863	3300012918	Vadose Zone Soil	TGELHLVLFLNGKRARLFAPLVRRPSPGLDLLDFTLAKFQFDLTLS*
Ga0137359_102231025	3300012923	Vadose Zone Soil	HLVLFPNGERARLFALLVGRPSPGLDLLDLALAKFQFDLPLS*
Ga0137404_101010642	3300012929	Vadose Zone Soil	MGELHLVLFPDGGRACLFRPLGGRPSLGLELLDLALAKFQFDLTFS*
Ga0164298_102179543	3300012955	Soil	GELHLVLFPNSERARLFAPFVGRPSPGLDLLGLALATFQFDLTFS*
Ga0164303_103370801	3300012957	Soil	ELHLVLFSNGECACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0164301_109961921	3300012960	Soil	RDAGWTRFTARIGELHLVLFPNGERACLFAPLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0134110_105680671	3300012975	Grasslands Soil	LHLVLFSNGQRACLFAPLVGRPSPGLGLLDLALAKFQFDLTLS*
Ga0134087_100591191	3300012977	Grasslands Soil	RIGELHLVLFPNRERACLFALLVGRPSPGLDLLDLALAKFQFDLTLS*
Ga0134087_108002292	3300012977	Grasslands Soil	GELHLVLFPDGECTDLFGSLGGRPSPGLDLLDLALAKFQFDLTLS*
Ga0157378_129034292	3300013297	Miscanthus Rhizosphere	VLFPNGERACLFALLVGRPSPGLELLDLALVKFQFDFTLG*
Ga0134078_102751412	3300014157	Grasslands Soil	RARMGELHLVLFTDGERANLFGSLGGRPSLGLDLLDLTLVKFQLDLTLS*
Ga0134072_100725261	3300015357	Grasslands Soil	MGELHVVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQ
Ga0184604_100754863	3300018000	Groundwater Sediment	MGELHLVLFPDGERARLLRPLGGRPSLGLELLDLALVKFQFDLTFS
Ga0184605_100655652	3300018027	Groundwater Sediment	MGELHLVLFPNGERADLFGSLGGRPSLGLELLDLALAKLQFDLTVS
Ga0184620_101436381	3300018051	Groundwater Sediment	MGELHLVLFPNGERADLFGSLGGRPSFGLDLLDLALAKFQFDLTFS
Ga0184617_10128312	3300018066	Groundwater Sediment	MGELHLVLFPDGERACLLGPLGGWPSLGLELLDLALAEFQFHLTFS
Ga0184618_103560191	3300018071	Groundwater Sediment	MGELHLVLFPNGERACLFRSVGGGTSPGLDLLDLALVKLQFDVTLG
Ga0066655_100727712	3300018431	Grasslands Soil	MGELHLVLFTDGERACLLRPLGGRPSLGLELLDLALAKFQFDVTLS
Ga0066667_100777102	3300018433	Grasslands Soil	MGELHLVLFTDGERADLFGSMGGRPALGLDLLDLALAKFQFDLTFSEQGL
Ga0066667_101256441	3300018433	Grasslands Soil	MGELHLVLFPDGERACLSRSLGRRTPLGLDLLDLALAKFQFALTFS
Ga0066662_114501402	3300018468	Grasslands Soil	TRFTSLIGELHMVVFPNRERACLFVLLVGRPSPVLDLLDLALAKFQFDLTLI
Ga0066669_101357291	3300018482	Grasslands Soil	MGELHLVLFPDGERACLLRPLGGRPSPGLDLLDLTLAKFQLDLALS
Ga0193715_10672483	3300019878	Soil	PNGERADLSGSLGGRPSFGLDLLDLALAKFQFDLTFS
Ga0193723_10396504	3300019879	Soil	ELHLVLFPNGERARLFAPLVGRPSPGLDLLDLALAKFQFDLTLG
Ga0193713_10770851	3300019882	Soil	GERACLFALLVGRPSPGLDLLDLALAKFQFDLTLS
Ga0193728_10529383	3300019890	Soil	MGELHLVLFPNGERARLFRSVGGRPSLGLELLDLALAKLQFDLTVS
Ga0193734_10257351	3300020015	Soil	NGERACLFALLVGRPSPGLDLLDLALAKFQFDLTLS
Ga0193709_10130894	3300021411	Soil	VLFSNGERARLFGPLVGRSSPGLDLLDLALAKFQFDLTLS
Ga0193695_10045124	3300021418	Soil	DAGWTRFTARIGELHLVLFPNGQRSCLFDPLVGRPSPGLGLLDLALAKFQFDLTLS
Ga0207642_108884031	3300025899	Miscanthus Rhizosphere	RAVSQRDAGWTRFTARIGELHLVLFPNSERACLFAPFVGRPSPGLDLLDLALAKFQFDLTLS
Ga0207710_104743682	3300025900	Switchgrass Rhizosphere	LVLFPNSERARLFAPLVGRPSPGLDLLDLALVKFQFDLTLS
Ga0207662_109223791	3300025918	Switchgrass Rhizosphere	PNSERACLFAPFVGRPSPGLDLLDLALAKFQFDLTLS
Ga0209234_11026562	3300026295	Grasslands Soil	MGELHLVLFPDGERGCLSRSLGGRPSLGLDLLDLALAKFQFDLTFS
Ga0209027_10537223	3300026300	Grasslands Soil	MGELHVVFFPNGQRADLFGSLGGRSSFGLDLLDLALAKFQFDLTFS
Ga0209153_11572361	3300026312	Soil	VLFPNGERACLFAPLVGRPSPGLGLLDLALAKFQFDVTLS
Ga0209268_10307591	3300026314	Soil	MGELHLVLFPDGECTDLFGSLGGRPSPGLDLLDVALA
Ga0209155_11076463	3300026316	Soil	MGELHLVLFPNGERGGLSRSLGGRPSPGLDLLDLTLAKFQFRLTFS
Ga0209801_12163721	3300026326	Soil	MGELHLVLFPDGERACLLRPLGGRPSLGLDLLDLTLAKFQLDLALS
Ga0209801_13545501	3300026326	Soil	MGELHLVLFPDGQRACLLRPLGGRPSLGLDLLDLALAEFQFDLTFS
Ga0209057_12064032	3300026342	Soil	RWTRFSSRMGELHLVLFPDGERACLLRPLGGRPSPGLDLLDLALAKFQFDLTLS
Ga0209056_106949791	3300026538	Soil	HLVLFPNRERSCLFDSLGGRTSTGLDLLDLALAEFQFGLTFS
Ga0209161_101039512	3300026548	Soil	MGELHLVLFPDGECTDLFGSLGGRPSPGLDLLDLALAKFQFDLTLS
Ga0137415_104765621	3300028536	Vadose Zone Soil	GWTRFTARIAELHLVLFPNRERACLFALLVGRSSPGLDLLDLALAKFQFDLTLS
Ga0137415_108539571	3300028536	Vadose Zone Soil	TAGHIRAFSECAARWTRFTSRISELHLVLFPNRERACLFAPLVGRPSPGADLLDLALAKLQFDLTLS
Ga0307292_105411341	3300028811	Soil	WTRFTSRIGELHLVLFPNGERACLFGPLVGRSSPGLDLLDLALAKFQFDLTLS
Ga0307277_100431381	3300028881	Soil	RFTARIGELYLVLFPNGERARLFGPLVGRSSPGLDLLDLALAKFQFDLTLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076433

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences