Metagenome / Metatranscriptome Family F076343

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076343
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	97 residues
Representative Sequence	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPGQD
Number of Associated Samples	91
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.75 %
% of genes near scaffold ends (potentially truncated)	24.58 %
% of genes from short scaffolds (< 2000 bps)	74.58 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.305 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.898 % of family members)
Environment Ontology (ENVO)	Unclassified (28.814 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.085 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 9.52% Coil/Unstructured: 79.37%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00011	HSP20	7.63
PF00487	FA_desaturase	4.24
PF12697	Abhydrolase_6	4.24
PF00561	Abhydrolase_1	4.24
PF04434	SWIM	3.39
PF00211	Guanylate_cyc	2.54
PF07992	Pyr_redox_2	1.69
PF02436	PYC_OADA	1.69
PF12872	OST-HTH	1.69
PF13468	Glyoxalase_3	0.85
PF07519	Tannase	0.85
PF06146	PsiE	0.85
PF08448	PAS_4	0.85
PF00313	CSD	0.85
PF01757	Acyl_transf_3	0.85
PF00691	OmpA	0.85
PF14329	DUF4386	0.85
PF02082	Rrf2	0.85
PF05875	Ceramidase	0.85
PF13343	SBP_bac_6	0.85
PF00563	EAL	0.85
PF00005	ABC_tran	0.85
PF04264	YceI	0.85
PF00440	TetR_N	0.85
PF13488	Gly-zipper_Omp	0.85
PF08281	Sigma70_r4_2	0.85
PF01734	Patatin	0.85
PF05524	PEP-utilisers_N	0.85
PF07452	CHRD	0.85
PF00364	Biotin_lipoyl	0.85
PF00072	Response_reg	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	7.63
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	4.24
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	4.24
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	3.39
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	3.39
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	3.39
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.54
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.85
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.85
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.85
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.85
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.85
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.85
COG3223	Phosphate starvation-inducible membrane PsiE (function unknown)	General function prediction only [R]	0.85
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.85
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.85
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.85
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.85
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.85
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.85
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.85
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.85
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.85
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.39 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	24.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.39 %
Unclassified	root	N/A	1.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	24.58 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.39 %
Unclassified	root	N/A	1.69 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	14.41 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.39 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	3.39 %
Unclassified	root	N/A	1.69 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	14.41 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.39 %
Chloroflexi bacterium 13_1_40CM_2_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	3.39 %
Unclassified	root	N/A	1.69 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10017097	All Organisms → cellular organisms → Bacteria	2597	Open in IMG/M
3300002558\|JGI25385J37094_10196044	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300002908\|JGI25382J43887_10108180	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300002912\|JGI25386J43895_10054211	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300005167\|Ga0066672_10005690	All Organisms → cellular organisms → Bacteria	5534	Open in IMG/M
3300005171\|Ga0066677_10215019	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300005171\|Ga0066677_10727108	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005177\|Ga0066690_10138873	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300005330\|Ga0070690_101120923	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005438\|Ga0070701_10541559	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005440\|Ga0070705_100981331	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005445\|Ga0070708_100000540	All Organisms → cellular organisms → Bacteria	28468	Open in IMG/M
3300005445\|Ga0070708_100055493	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300005445\|Ga0070708_100155663	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2128	Open in IMG/M
3300005445\|Ga0070708_101141322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	729	Open in IMG/M
3300005447\|Ga0066689_10124958	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300005447\|Ga0066689_10326200	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300005467\|Ga0070706_100387654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1301	Open in IMG/M
3300005518\|Ga0070699_101450565	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005536\|Ga0070697_100014410	All Organisms → cellular organisms → Bacteria → Proteobacteria	6209	Open in IMG/M
3300005536\|Ga0070697_100999734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	743	Open in IMG/M
3300005552\|Ga0066701_10474382	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	777	Open in IMG/M
3300005555\|Ga0066692_10523664	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005598\|Ga0066706_10213775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1487	Open in IMG/M
3300006046\|Ga0066652_100036839	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3569	Open in IMG/M
3300006046\|Ga0066652_100512834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1116	Open in IMG/M
3300006175\|Ga0070712_100539041	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	982	Open in IMG/M
3300006175\|Ga0070712_100853703	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300006796\|Ga0066665_10035084	All Organisms → cellular organisms → Bacteria	3333	Open in IMG/M
3300006797\|Ga0066659_10499055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	975	Open in IMG/M
3300006800\|Ga0066660_10227795	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300006852\|Ga0075433_10135030	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300006854\|Ga0075425_100052262	All Organisms → cellular organisms → Bacteria → Proteobacteria	4576	Open in IMG/M
3300006881\|Ga0068865_101256843	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657	Open in IMG/M
3300006954\|Ga0079219_10532087	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300007076\|Ga0075435_101253589	Not Available	649	Open in IMG/M
3300007255\|Ga0099791_10037411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2146	Open in IMG/M
3300007265\|Ga0099794_10004997	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5280	Open in IMG/M
3300007265\|Ga0099794_10363783	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300007788\|Ga0099795_10124467	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300007788\|Ga0099795_10522930	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300009098\|Ga0105245_10575862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1150	Open in IMG/M
3300009137\|Ga0066709_100163103	All Organisms → cellular organisms → Bacteria	2872	Open in IMG/M
3300009143\|Ga0099792_10338890	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	904	Open in IMG/M
3300009143\|Ga0099792_11033588	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300009176\|Ga0105242_12137116	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010159\|Ga0099796_10047861	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300010159\|Ga0099796_10476466	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300010321\|Ga0134067_10051208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1331	Open in IMG/M
3300010397\|Ga0134124_10305823	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300010401\|Ga0134121_13195763	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300010403\|Ga0134123_10680958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1002	Open in IMG/M
3300012198\|Ga0137364_10096885	All Organisms → cellular organisms → Bacteria → Proteobacteria	2070	Open in IMG/M
3300012202\|Ga0137363_10012648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5448	Open in IMG/M
3300012203\|Ga0137399_10281230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1371	Open in IMG/M
3300012203\|Ga0137399_10399899	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300012377\|Ga0134029_1229386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300012469\|Ga0150984_103804786	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012469\|Ga0150984_108732467	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300012582\|Ga0137358_10136081	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300012683\|Ga0137398_10167003	All Organisms → cellular organisms → Bacteria → Proteobacteria	1437	Open in IMG/M
3300012683\|Ga0137398_10782085	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300012685\|Ga0137397_10007911	All Organisms → cellular organisms → Bacteria	7393	Open in IMG/M
3300012685\|Ga0137397_10021499	All Organisms → cellular organisms → Bacteria	4535	Open in IMG/M
3300012685\|Ga0137397_10433061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	980	Open in IMG/M
3300012918\|Ga0137396_10396808	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300012922\|Ga0137394_10382231	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300012922\|Ga0137394_10664995	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300012923\|Ga0137359_10566918	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300012923\|Ga0137359_10837394	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300012929\|Ga0137404_11596589	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300012930\|Ga0137407_10583289	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1048	Open in IMG/M
3300012944\|Ga0137410_10045192	All Organisms → cellular organisms → Bacteria	3120	Open in IMG/M
3300012944\|Ga0137410_11743345	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012975\|Ga0134110_10114172	Not Available	1099	Open in IMG/M
3300012986\|Ga0164304_11325034	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300014150\|Ga0134081_10144513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	777	Open in IMG/M
3300015241\|Ga0137418_10574039	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300015241\|Ga0137418_11155406	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300015245\|Ga0137409_10076990	All Organisms → cellular organisms → Bacteria	3120	Open in IMG/M
3300018061\|Ga0184619_10001231	All Organisms → cellular organisms → Bacteria	8989	Open in IMG/M
3300018431\|Ga0066655_10089720	All Organisms → cellular organisms → Bacteria → Proteobacteria	1696	Open in IMG/M
3300018468\|Ga0066662_10030144	All Organisms → cellular organisms → Bacteria	3206	Open in IMG/M
3300021478\|Ga0210402_11575438	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300024347\|Ga0179591_1065223	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300025910\|Ga0207684_10216675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	1652	Open in IMG/M
3300025910\|Ga0207684_10482805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1063	Open in IMG/M
3300025915\|Ga0207693_10965721	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	652	Open in IMG/M
3300026118\|Ga0207675_102012768	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300026285\|Ga0209438_1122478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	723	Open in IMG/M
3300026300\|Ga0209027_1079190	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300026301\|Ga0209238_1018548	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
3300026305\|Ga0209688_1001997	All Organisms → cellular organisms → Bacteria → Proteobacteria	3389	Open in IMG/M
3300026309\|Ga0209055_1242540	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300026315\|Ga0209686_1072251	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300026322\|Ga0209687_1021141	All Organisms → cellular organisms → Bacteria	2132	Open in IMG/M
3300026325\|Ga0209152_10019520	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300026524\|Ga0209690_1201736	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300026550\|Ga0209474_10019920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5206	Open in IMG/M
3300026550\|Ga0209474_10214380	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1217	Open in IMG/M
3300026555\|Ga0179593_1116849	All Organisms → cellular organisms → Bacteria	3392	Open in IMG/M
3300026557\|Ga0179587_11045565	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	538	Open in IMG/M
3300027643\|Ga0209076_1031680	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300027655\|Ga0209388_1224951	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300027671\|Ga0209588_1228059	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300027678\|Ga0209011_1161303	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300027903\|Ga0209488_10248120	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300027903\|Ga0209488_10465093	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	930	Open in IMG/M
3300028536\|Ga0137415_10021220	All Organisms → cellular organisms → Bacteria → Proteobacteria	6434	Open in IMG/M
3300030990\|Ga0308178_1094014	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300030997\|Ga0073997_12216676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	933	Open in IMG/M
3300030998\|Ga0073996_10075089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_2_68_14	941	Open in IMG/M
3300031421\|Ga0308194_10131548	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300031720\|Ga0307469_10272453	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1377	Open in IMG/M
3300031720\|Ga0307469_10751252	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300031720\|Ga0307469_11357445	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031820\|Ga0307473_10078703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1682	Open in IMG/M
3300032205\|Ga0307472_100045525	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.37%
Host-Associated	Host-Associated	7.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.53%
Plants	Host-Associated → Plants	7.63%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.58%
Loam	Environmental → Terrestrial → Soil → Loam	16.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.37%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.47%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012377	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100170973	3300002558	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSEATTERCSFTLSAVEPYQD*
JGI25385J37094_101960441	3300002558	Grasslands Soil	MKRMIAIVDLKTGEVLLRPSDTSTLDVPADLDRDTGVALLIKSHAHYFSTFGRNVSGTTFPRPLSWRVRGEECLLAEPAEGRTGEVTYTLV
JGI25382J43887_101081802	3300002908	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVVSLLKSHAHYFSTTGKSATKATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPYQD*
JGI25386J43895_100542111	3300002912	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSEATTERCSFTLSA
Ga0066672_100056904	3300005167	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDKGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD*
Ga0066677_102150192	3300005171	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0066677_107271081	3300005171	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAVEATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD*
Ga0066690_101388731	3300005177	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD*
Ga0070690_1011209231	3300005330	Switchgrass Rhizosphere	MKRMISIVDLQTGLVSDRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMAERCSFTLAAVEPSQH*
Ga0070701_105415591	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMISIVDLQTGLVSVRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANISGEMTERCSFTLAAVEPSQH*
Ga0070705_1009813311	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMISIVDLQTGLVSDRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMAE
Ga0070708_1000005405	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIAIVDLKSGEVSVRSSDTSTLDVPLDLDRGRGVASLLRSYAHYFSTTGKSAIRAMVPRPLSRRERGEECLVANLSEAMTERCSFTLSVVEPRQH*
Ga0070708_1000554932	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTRMIPIVNLKTGEVSVRSSDTSTLDVPLDLDRGRGVASLLKSYAHYLSTTGKSAIKAALPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPGQD*
Ga0070708_1001556634	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGEVLLRSSDTSTLDVPADLDRDTGVALLVKSHAHYFSTAGKSVIGTTFPRPLSWRVRGEECLLADPGAGRMDGSSYTLVAVEPARS*
Ga0070708_1011413221	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVVSLVSSHAHYLSTAGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESG
Ga0066689_101249582	3300005447	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPGQD*
Ga0066689_103262001	3300005447	Soil	MKRMIAIVDLKTGEVLLRPSDTSTLDVPADLDRDTGVALLIKSHAHYFSTFGRNVSGTTFPRPLSWRVRGEECLLAEPAEGRTGEVTYTLVAVDPGQA*
Ga0070706_1003876541	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYVSTSGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQF*
Ga0070699_1014505652	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIAIVDLKTGEVSLRPSDTSTLDVPADFDRDAGVASLLNARVHYSSTAGKGVSKATYPRPLSWRTRGEECLIASEALTE
Ga0070697_1000144102	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMISIVDLKTGEVSVRSSDTSTLDVPGDLDRDAGVASFVSSHAHYLSTAGKNVSGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQF*
Ga0070697_1009997342	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYVSTSGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQ
Ga0066701_104743822	3300005552	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECMVANLSEAMTERCSFTLSAVEPGQE*
Ga0066692_105236641	3300005555	Soil	GGTMKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECMVANLSEAMTERCSFTLSAVEPGQD*
Ga0066706_102137753	3300005598	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD*
Ga0066652_1000368395	3300006046	Soil	MKRMIPIVDLKTGVVSLRSSDTSTLDVPADFDRDLGVASLIKSQAHYHSTAGRNVTGTTFPRPLSWRVRGEECLVADAVHAAAERASYTLMAVDPGLD*
Ga0066652_1005128341	3300006046	Soil	IVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0070712_1005390411	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGQVSDRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPGPHD*
Ga0070712_1008537032	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIAIVDLKSGEVSLRRSDTSTLDVPADFDRDAGVASLLNARVHYSSTGGKGVSKATYPRPLSWRIRGEECLVACEALTEEPSYSLSAIDPTEE*
Ga0066665_100350846	3300006796	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPGQD*
Ga0066659_104990552	3300006797	Soil	IPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASHLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0066660_102277952	3300006800	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDKGVASLLKSHAHYFSTTGKSAVEATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD*
Ga0075433_101350303	3300006852	Populus Rhizosphere	MKRMIPIVDLKTGEVSARSSDTSTLDVPVDLDRGKGVATLLKSYTHYLATTGKNAVTASFLRPLSWRVRGEECLVANLSEAMRERCSFTLAVVEPFQD*
Ga0075425_1000522626	3300006854	Populus Rhizosphere	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYVSTSGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQY*
Ga0068865_1012568431	3300006881	Miscanthus Rhizosphere	MKRMISIVDLQTGLVSDRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMAERCSFTLAAVEPSRH*
Ga0079219_105320871	3300006954	Agricultural Soil	AILASSFRLPFGRQAGIAAGAPKRSTMKRMISIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTNGKSVATASFARPLSWRVHGEECLVANLSEAMTERCSFTLSAVEPPQD*
Ga0075435_1012535892	3300007076	Populus Rhizosphere	MKRMIAIVDLKSGEVSVRSSDTSTLDVPLDLDRGRGVASLLRSYAHYFSTTGKSAIRAMVPRPLSRRERGEECLVANLSEAMTERCSFTLSVVEPHQH*
Ga0099791_100374112	3300007255	Vadose Zone Soil	MMKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPAPQD*
Ga0099794_100049974	3300007265	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPNDLDRDRGVASLLKSYTHYFSTAGKSAIRATVPRPLSWRVRGEECLVANLSEAMTERCSFTLSVVEPGQH*
Ga0099794_103637832	3300007265	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVVSLVSSHAHYVSTSGKNIIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVEPGQF*
Ga0099795_101244672	3300007788	Vadose Zone Soil	MKRLIAIVDLKTGEVSLRPSDTSTLDVPADFDRDAGVASLLNARVHYASTGGKGVSKATYPRPLSWRIRGEECLVASDALTEEPSYCLSAIDPTEE*
Ga0099795_105229302	3300007788	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPNDLDRDRGVASLLKSYAHYFSRAGKSAIQATFPRPLSWRVRGEECLVANLSEAMTERCSFTLSVVEPG
Ga0105245_105758622	3300009098	Miscanthus Rhizosphere	MKRMISIVDLQTGVVSVRPSNTSTLDVPVDLDRARGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANISGEMTERCSFTLAAVEPSQH*
Ga0066709_1001631033	3300009137	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECPVANLSEAMTERCSFTLSAVEPGQD*
Ga0099792_103388902	3300009143	Vadose Zone Soil	MKRMIPIVDLKTGQVSARWSDTSTLDVPSDLDRDAGVASLLKSQAHYRSTIGRNVNGPTFPRPLSWRVRGEECLVADPAQAGTKLARYTLMAVDPAPRN*
Ga0099792_110335881	3300009143	Vadose Zone Soil	MKRMISIVDLQTGEVSVRSSETSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTHPRPLSWRVRGEECLVANRLEGFRESGYTLSAVEPGQF*
Ga0105242_121371161	3300009176	Miscanthus Rhizosphere	MKRMISIVDLQTGLVSDRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANISGEMTERCSFTLAAVEPSQH*
Ga0099796_100478612	3300010159	Vadose Zone Soil	MKRLIAIVDLKTGEVSLRPSDTSTLDVPADFDRDAGVASLLNARVHYSSTAGKGVSKATYPRPLSWRIRGEECLVANDALTEEPSYCLSAIDPTEE*
Ga0099796_104764662	3300010159	Vadose Zone Soil	LKTGQVSARLSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPAPQD*
Ga0134067_100512082	3300010321	Grasslands Soil	MIPIVDLKTGEVSIRSSDTSTLDVPLDLDRDKGVASLLKSYAHYFSTTGKSAIRATFPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0134124_103058233	3300010397	Terrestrial Soil	MKRMISIVDLQTGLVSVRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMAERCSFTLAAVEPSQH*
Ga0134121_131957632	3300010401	Terrestrial Soil	FIDAIVEFVFSPPFRAPNWNRCWRNGGTMKRMISIVDLQTGLVSDRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMTERCSFTLAAVEPSQH*
Ga0134123_106809582	3300010403	Terrestrial Soil	MKRMISIVDLQTGLVSVRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANISGEMTERCSFTLAAVEPSRH*
Ga0137364_100968854	3300012198	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDIPVDFDRDRGVASLLKSYAHYFSTTGKSAVRATLPRPLSWRVRGEECLVANLSEGMTERCSFTLSAVEPRQD*
Ga0137363_100126483	3300012202	Vadose Zone Soil	MKRMISIVDLKTGEVSVRSSDTSTLDVPGDLDRDAGVVSFESSHAHYLSTAGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVEPGQF*
Ga0137399_102812301	3300012203	Vadose Zone Soil	MKRLIAIVDLKTGEVSLRPSDTSTLDVPADFDRDAGVASLLNARVHYSSTAGKGVSKATYPRPLSWRIRGEECLVATAALTEEPSYSLSAIDPTE*
Ga0137399_103998993	3300012203	Vadose Zone Soil	MISIVDLKTGVVSIRPSDTSTLDVPLDLDRDRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRAHGEECLVANLSEAMTERCSFTLSAVESSQD*
Ga0134029_12293861	3300012377	Grasslands Soil	GGTMKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLHRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0150984_1038047861	3300012469	Avena Fatua Rhizosphere	MKRMISIVDLNTGVVSIRPSNTSTLDVPVDLDRDKGVASFLKSHTHYFSTTGKSLTKASLPRPLSWRVHGEECLVANLSEEMTERCSFTLAAVEPSQY*
Ga0150984_1087324671	3300012469	Avena Fatua Rhizosphere	MKRMISIVDLQTGVVSIRPSNTSTLDVPVDLDRDRGVASFLKSHAHYFSTTGKSITKASLPRPLSWRVHGEECLVANLSDAMTERCSFTLSAVEPSQH*
Ga0137358_101360812	3300012582	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPAPQD*
Ga0137398_101670032	3300012683	Vadose Zone Soil	MKRMISIVDLQTGEVSVRSSETSTLDVPGDLDRDTGVASLVSSHAHYVSTSGKNIIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVEPGQF*
Ga0137398_107820852	3300012683	Vadose Zone Soil	MKRMISIVDLKTGVVSIRPSDTSTLDVPLDLDRDRGVASLLRSHAHYFSTTGKSVTKASSPRPLSWRVHGEECLVANLSEAMTER
Ga0137397_100079116	3300012685	Vadose Zone Soil	MIAIVDLKTGEVLLRSSDTSTLDVPADLDRDAGVAQLIKSHAHYFSTSGKSVSGSTFPRPLSWRVRGEECLLAEPGDTRVDGSSYTLVAVDPTEA*
Ga0137397_100214993	3300012685	Vadose Zone Soil	MISIVDLKTGVVSIRPSDTSTLDVPLDLDRGRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRVHGEECLVANLSEAMTERCSFTLSAVESSQD*
Ga0137397_104330612	3300012685	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAG
Ga0137396_103968082	3300012918	Vadose Zone Soil	MKRMISIVDLKTGVVSIRPSDTSTLDVPLDLDRDRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRAHGEECLVANLSEAMTERCSFTLSAVESSQD*
Ga0137394_103822314	3300012922	Vadose Zone Soil	MIAIVDLKSGEVLLRSSDTSTLDVPADLDRDAGVAQLIKSHAHYFSTSGKSVSGSTFPRPLSWRVRGEECLLAEPGDTRVDGSSYTLVAVDPTEA*
Ga0137394_106649951	3300012922	Vadose Zone Soil	MKRMISIVDLQTGEVSVRSSETSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTYPRPLSWRVRGEECLVANRLEGFRESGYTLSAVDPGQY*
Ga0137359_105669181	3300012923	Vadose Zone Soil	MKRMISIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTYPRPLSWRVRGEECLVANHLEGFSESGYTLSAVDPGQS*
Ga0137359_108373942	3300012923	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPNDLDRDRGVASLLKSYTHYFSTAGKSAIRATVPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPYQD*
Ga0137404_115965891	3300012929	Vadose Zone Soil	ARSPNRPWRASGGAMKRMISIVDLQTGEVSVRSSETSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTYPRPLSWRVRGEECLVANRLEGFRESGYTLSAVEPGQF*
Ga0137407_105832891	3300012930	Vadose Zone Soil	MKRMISIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTHPRPLSWRVRGEECLVANRLEGFRESGYTLSAVEPGQF*
Ga0137410_100451924	3300012944	Vadose Zone Soil	MISIVDLKTGVVSIRPSDTSTLDVPLDLDRDRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRVHGEECLVANLSEAMTERCSFTLSAVESSQD*
Ga0137410_117433451	3300012944	Vadose Zone Soil	MKRMISIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYLSTSGKNVIGVTYPRPLSWRVRGEECLVANRLEGFRESGYTLSAVDPGQY*
Ga0134110_101141721	3300012975	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSLTLSAVEPRQD*
Ga0164304_113250341	3300012986	Soil	RNGGTMKRMISIVDLQTGVVSVRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKESLPRPLSWRVQGEECLVANLSGEMAERCSFTLAAVEPSQH*
Ga0134081_101445131	3300014150	Grasslands Soil	VDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD*
Ga0137418_105740392	3300015241	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVANPAQAGTKLAGYTLMAVDPAPQD*
Ga0137418_111554061	3300015241	Vadose Zone Soil	IVDLKTGEVSLRPSDTSTLDVPADFDRDAGVASLLNARVHYSSTAGKGVSKATYPRPLSWRIRGEECLVATAALTEEPSYSLSAIDPTE*
Ga0137409_100769905	3300015245	Vadose Zone Soil	MISIVDLKTGVVSIRPSDTSTLYVPLDLDRDRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRVHGEECLVANLSEAMTERCSFTLSAVESSQD*
Ga0184619_100012318	3300018061	Groundwater Sediment	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAIRATLARPLSWRVRGEECMVANLSEAMTERCSFSLSAVEPGQD
Ga0066655_100897202	3300018431	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAMTERCSFTLSAVEPRQD
Ga0066662_100301444	3300018468	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSEATTERCSFTLSAVEPYQD
Ga0210402_115754381	3300021478	Soil	MKRMIPIVDLKTGQVSDRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPAPRD
Ga0179591_10652234	3300024347	Vadose Zone Soil	MKRMISIVDLKTGVVSIRPSDTSTLDVPVDLDRARGVASLLRSHAHYFSTTGKSVTKASFPSPLSRRVHGEECLVANLSEAMTERCSFTLSAVEPSRD
Ga0207684_102166753	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIAIVDLKSGEVSVRSSDTSTLDVPLDLDRGRGVASLLRSYAHYFSTTGKSAIRAMVPRPLSRRERGEECLVANLSEAMTERCSFTLSVVEPRQH
Ga0207684_104828053	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	TGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYVSTSGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQF
Ga0207693_109657212	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIPIVDLKTGQVSDRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPGPHD
Ga0207675_1020127682	3300026118	Switchgrass Rhizosphere	MKRMISIVDLQTGLVSVRPSNTSTLDVPVDLDRERGVASFLKSHAHYFSTTGKSIAKEILPRPLSWRVQGEECLVANISGEMTERCSFTLAAVEPSQH
Ga0209438_11224782	3300026285	Grasslands Soil	MKRMISIVDLKTGVVSIRPSDTSTLDVPLDLDRDRGVASLLRSYAHYFSTTGKSVTKASLPKPLSWRVHGEECLVANLSEAMTERCSFTLSAVESSQD
Ga0209027_10791903	3300026300	Grasslands Soil	IVDLKTGEVSVRSSDTSTLDVPVDLDRDKGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD
Ga0209238_10185484	3300026301	Grasslands Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD
Ga0209688_10019973	3300026305	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSHAHYFSTTGKSAITATFARPLSLRVRGEECLVANLSEAM
Ga0209055_12425401	3300026309	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPRQD
Ga0209686_10722511	3300026315	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAIEATLPRPLSWRVRGEECLVANLSETMTERC
Ga0209687_10211412	3300026322	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVASLLKSHAHYFSTTGKSAVEATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD
Ga0209152_100195201	3300026325	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDKGVASLLKSHAHYFSTTGKSAIKATLPRPLSWRVRGEECLVANLSETMTERCSFTLSAVEPYQD
Ga0209690_12017362	3300026524	Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAISATLPRPLSWRVRGEECMVANLSEAMTERCSFTLSAVEPGQE
Ga0209474_100199207	3300026550	Soil	MKRMISIVDLKTGEVSVRSSDTSTLDVPVDLDRGRGVASLLKSYAHYFSTTGKSAIRTTLPRPLSWRVRGEECLVANLSEAMTERCTFTLSAVDPGQD
Ga0209474_102143802	3300026550	Soil	MKRMIPIVDLKTGEVSIRSSDTSTLDVPLDLDRDKGVASLLKSYAHYFSTTGKSAIRATFPRPLSWRVRGEECLVANLSEAMTERCSFTLSAIEPGQD
Ga0179593_11168494	3300026555	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQAGTKLAGYTLMAVDPAPQD
Ga0179587_110455652	3300026557	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDVDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVAHPAQARTKLAGYTL
Ga0209076_10316803	3300027643	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVVSLLKSHAHYFSTTGKSATKATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPYQD
Ga0209388_12249511	3300027655	Vadose Zone Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVASLVKSQAHYRSTIGRNVNGPTYPRPLSWRVRGEECLVADPAQA
Ga0209588_12280591	3300027671	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVVSLVSSHAHYVSTSGKNIIGATYPRPLSWRVRGEECLVANRPEGFRES
Ga0209011_11613031	3300027678	Forest Soil	MKRMIPVVDLKSGEVSLRWSDTSTLDVPGDLDRDTGNLSLVKSHAHYFSTLGKSVVGATFPRPLSWRARGEECMVANPPEALTDLPGYTLSAVDPVRD
Ga0209488_102481202	3300027903	Vadose Zone Soil	MKRMIPVVDLKTGEVSVRSSETSTLDVPVDLDRDRGVASLLKSYAHYFSTAGKSAIKATFPRPLSWRVRGEECLVANLTQAMTERCSFSLSVVEPRQH
Ga0209488_104650931	3300027903	Vadose Zone Soil	MKRMIPIVDLKTGQVSARWSDTSTLDVPSDLDRDAGVASLLKSQAHYRSTIGRNVNGPTFPRPLSWRVRGEECLVADPAQAGTKLARYTLMAVDPAPRN
Ga0137415_100212202	3300028536	Vadose Zone Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRDRGVVSLLKSHAHYFSTTGKSATKATLPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVESSQD
Ga0308178_10940142	3300030990	Soil	MKRMIPIVDLKTGEVFLRSSDTSTLDVPGDFDREKGAVELVKSHAHYFSVGGKNVSASTFPRPLSWRVRGEECLVADAAKALSYNLSEVEPA
Ga0073997_122166763	3300030997	Soil	MKRMIPVVDLNSGEVSLRWSDTSTLDVPGDLDRDTGNLSLVKTHAHYFSTLGKSVVGATFPRPLSWRARGEECMVANPPEALTAALSGYTLSAVDPRQD
Ga0073996_100750891	3300030998	Soil	MKRMIPVVDLKSGEVSLRWSDTSTLDVPGDLDRDTGNFSLVKSHAHYFSTMGKSVVGATFPRPLSWRARGEECMVANPPEALTDLSGYTLSAVDPVRD
Ga0308194_101315481	3300031421	Soil	TMKRMIPIVDLKTGEVSVRSSDTSTLDVPFDLDRGRGVASLLKSYAHYFSTTGKSAIRATLARPLSWRVRGEECMVANLSEAMTERCSFSLSAVEPGQD
Ga0307469_102724531	3300031720	Hardwood Forest Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPVDLDRGKGVASLLRSYAHYFSTTGKSVIRATFPRPLSWRVRGEECLVANLSEAMTERCSFTLSAVEPRQD
Ga0307469_107512522	3300031720	Hardwood Forest Soil	MKRMIPIVDLKTGEVSVRSSDTSTLDVPGDLDRDTGVASLVSSRAHYVSTSGKNVIGATYPRPLSWRVRGEECLVANRPEGFRESGYTLSAVDPGQY
Ga0307469_113574451	3300031720	Hardwood Forest Soil	MKRMIPIVDLKTGQVSVRWSDTSTLDVPSDLDRDAGVATLVKSQAHYRSTIGRNVIGPTYPRPLSWRVRGEECMVANPAPAATKLAGYTLMAVDPAPRD
Ga0307473_100787032	3300031820	Hardwood Forest Soil	MKRMIPIVDLKTGEVSSRWSDTATFDVPRDLDRDAGVASLVKSQAHYRSTIGRNVSEPTFPRPLSWRVRGEECMVANPLQAATKLAGYTLMAVDPAPQN
Ga0307472_1000455256	3300032205	Hardwood Forest Soil	MKRMIAIVDLKTGEVLLRPSDTSTLDVPVDLDRDAGVAQLIKSQAHYFSTSGKSVSGSTFPRPLSWRVRGEECLLADLGNSRVDGSSYTLVAVDPTES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076343

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences