Metagenome / Metatranscriptome Family F076340

Basic Information
Family ID	F076340
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	52 residues
Representative Sequence	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR
Number of Associated Samples	96
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.09 %
% of genes near scaffold ends (potentially truncated)	36.44 %
% of genes from short scaffolds (< 2000 bps)	84.75 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Bacteria (61.864 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.254 % of family members)
Environment Ontology (ENVO)	Unclassified (33.051 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.390 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.51% β-sheet: 0.00% Coil/Unstructured: 79.49%
Feature Viewer

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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12728	HTH_17	33.05
PF04417	DUF501	11.86
PF03009	GDPD	7.63
PF02887	PK_C	4.24
PF04977	DivIC	0.85
PF08544	GHMP_kinases_C	0.85
PF03819	MazG	0.85
PF05702	Herpes_UL49_5	0.85
PF00113	Enolase_C	0.85
PF00578	AhpC-TSA	0.85
PF02737	3HCDH_N	0.85
PF13490	zf-HC2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1507	Uncharacterized conserved protein, DUF501 family	Function unknown [S]	11.86
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	7.63
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	4.24
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.85
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.85
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.85
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.85
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.85
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	0.85
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.86 %
Unclassified	root	N/A	38.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.86 %
Unclassified	root	N/A	38.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.86 %
Unclassified	root	N/A	38.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.02 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.02 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.02 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.85 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.02 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.85 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.02 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.85 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.02 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	0.85 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0661526	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300000956\|JGI10216J12902_103224127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1660	Open in IMG/M
3300001535\|A3PFW1_10950671	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300004114\|Ga0062593_100047094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2649	Open in IMG/M
3300004114\|Ga0062593_100642722	Not Available	1022	Open in IMG/M
3300004114\|Ga0062593_103023199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300004157\|Ga0062590_102130324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300004479\|Ga0062595_100187808	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300004479\|Ga0062595_100433324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300004479\|Ga0062595_101289531	Not Available	656	Open in IMG/M
3300004643\|Ga0062591_100341164	Not Available	1205	Open in IMG/M
3300005093\|Ga0062594_100069865	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300005093\|Ga0062594_100541652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1000	Open in IMG/M
3300005328\|Ga0070676_10262438	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300005329\|Ga0070683_101657545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300005332\|Ga0066388_100039067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	4651	Open in IMG/M
3300005338\|Ga0068868_100847855	Not Available	827	Open in IMG/M
3300005340\|Ga0070689_101344113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644	Open in IMG/M
3300005345\|Ga0070692_11227204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005347\|Ga0070668_101369554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300005364\|Ga0070673_100407985	Not Available	1216	Open in IMG/M
3300005366\|Ga0070659_101933712	Not Available	529	Open in IMG/M
3300005437\|Ga0070710_10782099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300005445\|Ga0070708_100606530	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300005456\|Ga0070678_101530354	Not Available	625	Open in IMG/M
3300005529\|Ga0070741_10012617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15216	Open in IMG/M
3300005529\|Ga0070741_10034550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6829	Open in IMG/M
3300005535\|Ga0070684_100562135	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300005535\|Ga0070684_100968310	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005764\|Ga0066903_100089870	All Organisms → cellular organisms → Bacteria	4073	Open in IMG/M
3300005764\|Ga0066903_100499297	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300005764\|Ga0066903_103610926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	833	Open in IMG/M
3300006032\|Ga0066696_10853354	Not Available	580	Open in IMG/M
3300006046\|Ga0066652_100367013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1301	Open in IMG/M
3300006175\|Ga0070712_100654967	Not Available	892	Open in IMG/M
3300006904\|Ga0075424_101313446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	769	Open in IMG/M
3300006954\|Ga0079219_10363394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300009094\|Ga0111539_13476897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300009098\|Ga0105245_10002441	All Organisms → cellular organisms → Bacteria	16824	Open in IMG/M
3300009098\|Ga0105245_10696575	Not Available	1049	Open in IMG/M
3300009147\|Ga0114129_10818551	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300009147\|Ga0114129_13236212	Not Available	529	Open in IMG/M
3300009174\|Ga0105241_12497665	Not Available	517	Open in IMG/M
3300009553\|Ga0105249_11418000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300010154\|Ga0127503_10801548	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300010358\|Ga0126370_11480934	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010362\|Ga0126377_10143755	All Organisms → cellular organisms → Bacteria	2233	Open in IMG/M
3300010371\|Ga0134125_10334474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1681	Open in IMG/M
3300010373\|Ga0134128_10788249	Not Available	1054	Open in IMG/M
3300010373\|Ga0134128_11270159	Not Available	812	Open in IMG/M
3300010375\|Ga0105239_10470816	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300010400\|Ga0134122_11274154	Not Available	741	Open in IMG/M
3300012204\|Ga0137374_10038442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5104	Open in IMG/M
3300012211\|Ga0137377_11446286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300012350\|Ga0137372_10024609	All Organisms → cellular organisms → Bacteria	5588	Open in IMG/M
3300012355\|Ga0137369_10000842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29307	Open in IMG/M
3300012358\|Ga0137368_10192364	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300012360\|Ga0137375_10010498	All Organisms → cellular organisms → Bacteria	10959	Open in IMG/M
3300012912\|Ga0157306_10235058	Not Available	637	Open in IMG/M
3300012955\|Ga0164298_10053984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1946	Open in IMG/M
3300012960\|Ga0164301_10238979	Not Available	1185	Open in IMG/M
3300012961\|Ga0164302_10756268	Not Available	728	Open in IMG/M
3300012988\|Ga0164306_10217944	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300012988\|Ga0164306_11058227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300013296\|Ga0157374_11445159	Not Available	711	Open in IMG/M
3300013297\|Ga0157378_10421464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1319	Open in IMG/M
3300013307\|Ga0157372_10430060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1539	Open in IMG/M
3300013307\|Ga0157372_11691084	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300013307\|Ga0157372_12126016	Not Available	645	Open in IMG/M
3300014058\|Ga0120149_1246865	Not Available	501	Open in IMG/M
3300014157\|Ga0134078_10506176	Not Available	562	Open in IMG/M
3300014314\|Ga0075316_1172180	Not Available	558	Open in IMG/M
3300014827\|Ga0120171_1032731	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300015201\|Ga0173478_10408644	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300015371\|Ga0132258_10296754	All Organisms → cellular organisms → Bacteria	3973	Open in IMG/M
3300015371\|Ga0132258_13516796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300015373\|Ga0132257_102700788	Not Available	646	Open in IMG/M
3300017944\|Ga0187786_10032160	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300017947\|Ga0187785_10020503	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300017974\|Ga0187777_10145056	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300018060\|Ga0187765_10093009	Not Available	1629	Open in IMG/M
3300018073\|Ga0184624_10173279	Not Available	956	Open in IMG/M
3300019356\|Ga0173481_10284378	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300020070\|Ga0206356_10997718	Not Available	508	Open in IMG/M
3300024055\|Ga0247794_10028204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1439	Open in IMG/M
3300024055\|Ga0247794_10149718	Not Available	728	Open in IMG/M
3300025907\|Ga0207645_11197622	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300025911\|Ga0207654_10954062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623	Open in IMG/M
3300025915\|Ga0207693_10380556	Not Available	1104	Open in IMG/M
3300025927\|Ga0207687_10293619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1307	Open in IMG/M
3300025931\|Ga0207644_10608393	Not Available	908	Open in IMG/M
3300025961\|Ga0207712_10953243	Not Available	760	Open in IMG/M
3300026067\|Ga0207678_11888706	Not Available	521	Open in IMG/M
3300026118\|Ga0207675_100795438	Not Available	959	Open in IMG/M
3300027821\|Ga0209811_10047015	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300027875\|Ga0209283_10711520	Not Available	626	Open in IMG/M
3300028281\|Ga0247689_1020582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	875	Open in IMG/M
3300028281\|Ga0247689_1070508	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300028587\|Ga0247828_10174590	Not Available	1099	Open in IMG/M
3300028596\|Ga0247821_11095181	Not Available	537	Open in IMG/M
3300028744\|Ga0307318_10199252	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300028744\|Ga0307318_10269271	Not Available	595	Open in IMG/M
3300028771\|Ga0307320_10147245	Not Available	910	Open in IMG/M
3300028771\|Ga0307320_10432708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300028787\|Ga0307323_10045910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1535	Open in IMG/M
3300028791\|Ga0307290_10313848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	574	Open in IMG/M
3300028802\|Ga0307503_10855613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300028814\|Ga0307302_10351505	Not Available	727	Open in IMG/M
3300028828\|Ga0307312_10541031	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300028889\|Ga0247827_10154295	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300029999\|Ga0311339_11090698	Not Available	740	Open in IMG/M
3300030336\|Ga0247826_10100220	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300030336\|Ga0247826_10433698	Not Available	979	Open in IMG/M
3300032770\|Ga0335085_10018163	All Organisms → cellular organisms → Bacteria	10114	Open in IMG/M
3300033004\|Ga0335084_10609301	Not Available	1117	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.73%
Host-Associated	Host-Associated	26.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.03%
Plants	Host-Associated → Plants	26.27%
Aquatic	Environmental → Aquatic	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.93%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Peat	Environmental → Terrestrial → Peat	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.41%
Loam	Environmental → Terrestrial → Soil → Loam	11.02%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.54%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.39%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.39%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.54%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.69%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028281	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06615262	3300000033	Soil	VRPLILLIAIVAVFAVGLALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRXG*
JGI10216J12902_1032241274	3300000956	Soil	RGWARPLLWLAAIVVVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTTGR
A3PFW1_109506711	3300001535	Permafrost	VLVVTFLAGLGLGQSLDDNPSPGHTQTLVRTLKPLEVPPAVETVTVTAPR*
Ga0062593_1000470944	3300004114	Soil	VLAAIVVVFAVGLALGQALHDNPSGGSQTVVRTLKPLALPPARETVTVTRPG*
Ga0062593_1006427222	3300004114	Soil	VLLVVFAAGLALGQALDDNHSSGDTQTLVRTLKPLEVPPVRETVTVTATR*
Ga0062593_1030231991	3300004114	Soil	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVT
Ga0062590_1005233813	3300004157	Soil	GLALGQALHDNPSGGSQTVVRTLKPLALPPARETVTVTRPG*
Ga0062590_1021303241	3300004157	Soil	VLFWAIGLVVIFGAGLAIGQALDDNPSAGDTQTVVRTLKPLELPPVRETITVTVRR*
Ga0062595_1001878084	3300004479	Soil	LIVVAVVFALGLALGEALHDNPSGGGTQTLVRTLKPLPLPPARETVTVRK*
Ga0062595_1004333242	3300004479	Soil	VLVVVFGVGLALGQALDDNPSSGDTHTLVRTLRPLELPPARETVTVTVTR*
Ga0062595_1012895312	3300004479	Soil	VLVALIVVFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVTVSK*
Ga0062591_1003411642	3300004643	Soil	VLVVVFGVGLALGHALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0062594_1000698652	3300005093	Soil	VRPLIWLIAIVAVFAVGVALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG*
Ga0062594_1005416523	3300005093	Soil	VLVALIVVFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARE
Ga0070676_102624381	3300005328	Miscanthus Rhizosphere	VVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTR
Ga0070683_1016575451	3300005329	Corn Rhizosphere	VLVVLIVVFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVTVSK*
Ga0066388_1000390676	3300005332	Tropical Forest Soil	VIAGIVVVFAAGLALGEALHDNPSGGTETLVRTLKPRPLPPARETVTVTVSR*
Ga0068868_1008478551	3300005338	Miscanthus Rhizosphere	LAGAIVLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR*
Ga0070689_1013441132	3300005340	Switchgrass Rhizosphere	VLLVLIVAFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVTVSK*
Ga0070692_112272041	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VLVVVFGVGLALGQALDDNPPSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0070668_1013695542	3300005347	Switchgrass Rhizosphere	VLAAIVVVFAVGLALGQALHDNPSGGSQTVVRTLKPLPLPPARETVTVTRPG*
Ga0070673_1004079852	3300005364	Switchgrass Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0070659_1019337121	3300005366	Corn Rhizosphere	VRPLIWLIAIVAVFALGLALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG*
Ga0070710_107820991	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VRPLLCLAAIVVVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTRPG*
Ga0070708_1006065302	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VVVAFGAGLGLGQALDDNPSTGRTQTLVRTLKPLAVPPARETVTVTVGP*
Ga0070678_1015303542	3300005456	Miscanthus Rhizosphere	VGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTV
Ga0070741_1001261715	3300005529	Surface Soil	VVVFGVGLAIGQALDDSPSSGGTQTLVRTLKPLELPPARETVTVTVRR*
Ga0070741_100345504	3300005529	Surface Soil	VIAFGVGLAIGQALDDSPSSGGTQTLVRTLKPLELPPARETVTVTVRR*
Ga0070684_1005621351	3300005535	Corn Rhizosphere	VVFAVGLALGQALHDNPSGGSQTVVRTLKPLALPPARETVTVTRPG*
Ga0070684_1009683103	3300005535	Corn Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARE
Ga0066903_1000898704	3300005764	Tropical Forest Soil	VRSLVGLLVLVLVFGLGLALGEALHDNPSGDGTQTLVRTLKPLPLPPARETVTVKR*
Ga0066903_1004992975	3300005764	Tropical Forest Soil	VLLVVAVLLVVFGAGLALGQALNDNPSPGDTQTLVRTLKPLELPPSRETVTITR*
Ga0066903_1036109262	3300005764	Tropical Forest Soil	VLRVVVWAVVIAGVFALGLALGEALHDNPSGGGTQTLVRTLKPLPLPPARETVTRTVTG*
Ga0066696_108533542	3300006032	Soil	VGLLVTFGAGIAIGQALDDNSSPGRTQTLVRTLKPLQVPPLAETVTVTVRR*
Ga0066652_1003670134	3300006046	Soil	VLVVVFGVGLALGQALDDNPSSGKTQTLVRTLKPLELPPARVTVTVTVSR*
Ga0070712_1006549671	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GAIVLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKALELPPARETVTVTVTR*
Ga0075424_1013134463	3300006904	Populus Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR*
Ga0079219_103633941	3300006954	Agricultural Soil	LVVAFGGGLALGQALDDNPSSDDTQTVVRTLKPLELPPVRETVTVTVSR*
Ga0111539_134768971	3300009094	Populus Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARET
Ga0105245_1000244110	3300009098	Miscanthus Rhizosphere	VVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTRPG*
Ga0105245_106965753	3300009098	Miscanthus Rhizosphere	RRRALAGAIVLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR*
Ga0114129_108185511	3300009147	Populus Rhizosphere	LLRLLVALIVIAVVFGLGLALGEALHDNPSGGGTQTLVRTLKPLALPPARETVTVTATG*
Ga0114129_132362122	3300009147	Populus Rhizosphere	FGVGVAVGEALHDAPASGGANQTLVRTLRPLPLAPAHETVTVTVSQP*
Ga0105241_124976651	3300009174	Corn Rhizosphere	VVVFGVGLALGQALDDNPPSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0105249_114180003	3300009553	Switchgrass Rhizosphere	VRPLIWLIAIVAVFAVGLALGEALHDNPTGGTQTIVRTLKPLELPPARE
Ga0127503_108015481	3300010154	Soil	LLIAVVAVFAVGLALGEALHDNPSGGTQTIVRTLKPLEVPPARETVTVTRPG*
Ga0126370_114809341	3300010358	Tropical Forest Soil	IVVVFAAGLALGEALHDNPSGGTETLVRTLKPRPLPPARETVTVTVSR*
Ga0126377_101437552	3300010362	Tropical Forest Soil	VRFLVVLGAIVVVFAIGLALGQALHDNPSGGTQTVVRTLKPLPLPPAQETVTVTRPG*
Ga0134125_103344745	3300010371	Terrestrial Soil	VIAVVFAAGLGLGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVRK*
Ga0134128_107882492	3300010373	Terrestrial Soil	VGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR*
Ga0134128_112701592	3300010373	Terrestrial Soil	VRPLIWLIAIVAVFAVGLALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG*
Ga0105239_104708163	3300010375	Corn Rhizosphere	VLVVVFGVGLALGQALDDIPSSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0134122_112741541	3300010400	Terrestrial Soil	RTRQRVLLWAIGLVVIFGAGLAIGQALDDNPSAGDTQTVVRTLKPLELPPVRETVTVTVRR*
Ga0137374_100384421	3300012204	Vadose Zone Soil	LIAAVALVVVFFAGLAIGQSLDDNPSSGRTQTLVRTLKPLELPPAAETVTVTVKP*
Ga0137377_114462862	3300012211	Vadose Zone Soil	VTFGVGLALGQSLDDNPSPGRSQTLVRTLRPLEVAPARETVTVTVRR*
Ga0137372_100246096	3300012350	Vadose Zone Soil	VLLVVGLVVAFGVGLAIGQALDDNPSPGRTQTLVRTLKPLELPPRAETVTVTVRR*
Ga0137369_100008424	3300012355	Vadose Zone Soil	VAGAVVVTFVAGLALGQALDDSPAPGRNQTLVRTLKPLEVPPASKTVTVTVRR*
Ga0137368_101923643	3300012358	Vadose Zone Soil	VAGAVVVTFVAGLALGQALDDSPAPGRNQTLVRTLKPLEVPPASKTVTVTVTVRR*
Ga0137375_100104981	3300012360	Vadose Zone Soil	FVAGLALGQALDDSPAPGRNQTLVRTLKPLEVPPASKTVTVTVRR*
Ga0157306_102350581	3300012912	Soil	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETV
Ga0164298_100539842	3300012955	Soil	VRPLLWLAAIVVVFAVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTRPG*
Ga0164301_102389792	3300012960	Soil	VAGAIVLVVVFGVGLALGQALDDNPSSGDTRTFVRTLKPLELPPARETVTVTVRR*
Ga0164302_107562681	3300012961	Soil	AGAIVLVVVFGVGLALGQALDDNPTSGDTQTLVRTLKPLELPPARETVTVTVRR*
Ga0164304_102392711	3300012986	Soil	RRPPKRARRRRALAGAIVLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0164306_102179444	3300012988	Soil	VGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVRR*
Ga0164306_110582272	3300012988	Soil	VRRRRALIGAIVLVVVFGVGLALGQALDDNPSSGDTQTFVRTLKPLELPPARETVTVTVTR*
Ga0157374_114451591	3300013296	Miscanthus Rhizosphere	VRPLIWLIGIVAVFAVGLALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG*
Ga0157378_104214641	3300013297	Miscanthus Rhizosphere	VVVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTATRPG*
Ga0157372_104300603	3300013307	Corn Rhizosphere	VGFDIGVLFWAIGLVVIFGAGLAIGQALDDNPSAGDTQTVVRTLKPLELPPVRETITVTVRR*
Ga0157372_116910842	3300013307	Corn Rhizosphere	IAIVAVFAVGVALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG*
Ga0157372_121260161	3300013307	Corn Rhizosphere	ARRRRALAGAIVLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVTR*
Ga0120149_12468652	3300014058	Permafrost	VLVVTFLAGLGLGQSLDDNPSPGHTQTLVRTLKPLEVPPAVETVTV
Ga0134078_105061762	3300014157	Grasslands Soil	LVVIAVVFALGLALGEALHDNPTGDGTQTLVRTLKPLPLPPARETVTVTR*
Ga0075316_11721802	3300014314	Natural And Restored Wetlands	GAGLAIGQSLDDNPGTGRSQTLVRTLKPLEVAPERETVTVTTQP*
Ga0120171_10327313	3300014827	Permafrost	VLVVTFLAGLGLGQALDDNPSPGHTQTLVRTLKPLEVPPAVETVTVTAPR*
Ga0173478_104086442	3300015201	Soil	VIVAVFGAGLALGEALHDNPSGGTQTLVRTLTPLQVPPARETVIVTKTR*
Ga0132258_102967545	3300015371	Arabidopsis Rhizosphere	VIVIVAVFALGLALGQALHDNPSGGETQTLVRTLKPLPLPPARETVTVTR*
Ga0132258_135167962	3300015371	Arabidopsis Rhizosphere	VAVLVVVFGAGLAIGQALDDNPSSGRTQTLVRTLKPLELPPVRETETVTSGR*
Ga0132257_1027007881	3300015373	Arabidopsis Rhizosphere	LFLAGIGLGQALDDNPEPGRTQTLVRTLDPLPLAPAARSTVTVTISKP*
Ga0187786_100321603	3300017944	Tropical Peatland	VLRVLAWLIVIVVVFAVGLALGEALHDNPSGGGTQTLVRTLKPLPLPPARETVTRTVTR
Ga0187785_100205033	3300017947	Tropical Peatland	VLRVLAWLIVIVVVFAVGLALGEALHDNPSGGGTQTLVRTLKPLPLPPAPETVTRTVTR
Ga0187777_101450563	3300017974	Tropical Peatland	VAALVVVFGIGLAIGESLHDNPSPGDTQTLVRTLKPLELPPARETVTVTVKR
Ga0187765_100930094	3300018060	Tropical Peatland	VIAGVLALGLALGEALHDNPSTGGTQTLVRTLKPLPLPPARETVTVRK
Ga0184624_101732793	3300018073	Groundwater Sediment	VRPLIWLIAIVAVFAVGLALGEALHDNPTGGTQTLVRTLKPLAVPPARETVTVTRSK
Ga0173481_102843781	3300019356	Soil	SRLRFLVWALVIVAVFGAGLALGEALHDNPSGGTQTLVRTLTPLQVPPARETVIVTKTR
Ga0206356_109977182	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLAAVAVAILLFVVGIAVGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG
Ga0247794_100282043	3300024055	Soil	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLKPLELPPARETVTVTVTR
Ga0247794_101497181	3300024055	Soil	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPPARETVTVTVTR
Ga0207645_111976222	3300025907	Miscanthus Rhizosphere	LIWLIAIVAVFAVGVALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG
Ga0207654_109540622	3300025911	Corn Rhizosphere	VVFGVGLALGEALHDNPSGGTQTVVRTLKPLPLPPARETVTVTRPG
Ga0207693_103805562	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VLVVVFGVGLALGQALDDNPPSGDTQTLVRTLRPLELPPARETVTVTVTR
Ga0207687_102936194	3300025927	Miscanthus Rhizosphere	VLAAIVVVFAVGLALGQALHDNPSGGSQTVVRTLKPLALPPARETVTVTRPG
Ga0207644_106083933	3300025931	Switchgrass Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTHTLVRTLRPLELPPARETVTVTVTR
Ga0207704_109469732	3300025938	Miscanthus Rhizosphere	PPKRARRRRALAGAIVLVVVFGVGLALGQALDDNPSSGGTQTLVRTLRPLELPPARETVTVTVTR
Ga0207712_109532432	3300025961	Switchgrass Rhizosphere	VLVVLIVVFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVTVSK
Ga0207678_118887061	3300026067	Corn Rhizosphere	AVVLLAVFGAGLALGQALNDNPSSGDPQTLVRTLKPLELPPARETVTVTR
Ga0207675_1007954381	3300026118	Switchgrass Rhizosphere	VLVVVFGVGLALGQALDDNPSSGDTQTLVRTLRPLELPRARETVTVTV
Ga0209811_100470152	3300027821	Surface Soil	VLLVVFGVGLALGQALDDNPPSGDTQTFVRTLKPLELPPARETVTVTVRR
Ga0209283_107115202	3300027875	Vadose Zone Soil	ALGQSLDDNPSPGRTQTSVRTLKPLAVPPIPETVTVTVRR
Ga0247689_10205821	3300028281	Soil	VLVVLIVVFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVT
Ga0247689_10705082	3300028281	Soil	VLIVAFAAGLALGEALQDNPSGGTQTIVRTLKPRPLPPARETVTVTVSK
Ga0247828_101745902	3300028587	Soil	VLVVVFGVGLALGQALDDNPPSGDTQTLVRTLKPLELPPARETVTVTVRR
Ga0247821_110951812	3300028596	Soil	LIGAIVLVVVFGVGLALGQALDDNPPSGDTQTLVRTLKPLELPPARETVTVTVRR
Ga0307318_101992522	3300028744	Soil	LLVVAFFAGLALGQSLDDNPSPGRTQSLVRTLKPLEVPPAAETVTVTVKR
Ga0307318_102692712	3300028744	Soil	AAVLVVALLAGLALGQSLDDNPSPGRTQTLVRTLKPLEVPPAVDTVTVTVRP
Ga0307320_101472452	3300028771	Soil	LLVVAFFAGLALGQSLDDNPSPGRTQSLVRTLKPLEVPPAAETVTVTVNR
Ga0307320_104327081	3300028771	Soil	VRIVVLVIVFVLGLALGQALDDNPDPDSSPPQTLVRTLGPLPLSAPPTVTVTVT
Ga0307323_100459103	3300028787	Soil	VRPLIWLIAIVAVFAVGLALGGALHDNPTGGTQTLVRTLKPLAVPPARETVTVTRSK
Ga0307290_103138481	3300028791	Soil	VRIVVLVIVFVLGLALGQALDDNPDPDSSPPQTLVRTLGPL
Ga0307503_108556132	3300028802	Soil	VLVALVVVFVAGLALGEALQDNPSGGTQTFVRTLKPRPLPPARETVT
Ga0307302_103515052	3300028814	Soil	VRPLIWLIAIVAVFAVGLALGGALHDNPTGGTQTLVRTLKPLAVPPALETVTVTRSK
Ga0307312_105410311	3300028828	Soil	VITFLAGLGLGQSLDDNPSPGRTQTLVRTLKPLELPPAAET
Ga0247827_101542951	3300028889	Soil	IGAILLVVVFGVGLALGQALDDNPPSGDTQTLVRTLKPLELPPARETVTVTVRR
Ga0311339_110906982	3300029999	Palsa	VAGIVVVAFAAGLGLGQALRDGPREGSQTLVRTLRPLSLVPVVQDTVTVTTRSP
Ga0247826_101002204	3300030336	Soil	VRPLIWLIGIVAVFAVGLALGEALHDNPTGGTQTIVRTLKPLELPPARETVTVTRPG
Ga0247826_104336982	3300030336	Soil	VVVFAAGIALGQAQHDNPKHGGTQTSIRTLRPLEVPPAPTTVTVTTRR
Ga0335085_100181636	3300032770	Soil	VIVFGIGLAIGESLHDNPSPGDTQTLVRTLKPLELPPARETVTVTVRR
Ga0335084_106093013	3300033004	Soil	VLRVLAWLIVIVVVFAVGLALGEALHDNPPGGGTQTLVRTLKPLPLPPARETVTRTVTR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076340

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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