NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F076137

Metagenome / Metatranscriptome Family F076137

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076137
Family Type Metagenome / Metatranscriptome
Number of Sequences 118
Average Sequence Length 53 residues
Representative Sequence TRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD
Number of Associated Samples 88
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 1.69 %
% of genes from short scaffolds (< 2000 bps) 0.85 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.305 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere
(10.169 % of family members)
Environment Ontology (ENVO) Unclassified
(73.729 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(83.051 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.58%    β-sheet: 0.00%    Coil/Unstructured: 73.42%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF13487HD_5 11.02
PF01243Putative_PNPOx 8.47
PF01966HD 5.93
PF00196GerE 5.08
PF07859Abhydrolase_3 3.39
PF09995MPAB_Lcp_cat 3.39
PF02558ApbA 3.39
PF13683rve_3 1.69
PF05922Inhibitor_I9 1.69
PF08808RES 0.85
PF13193AMP-binding_C 0.85
PF13358DDE_3 0.85
PF07589PEP-CTERM 0.85
PF05988DUF899 0.85
PF00378ECH_1 0.85
PF069833-dmu-9_3-mt 0.85
PF03480DctP 0.85
PF01163RIO1 0.85
PF05598DUF772 0.85
PF13489Methyltransf_23 0.85
PF01127Sdh_cyt 0.85
PF13191AAA_16 0.85
PF00072Response_reg 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 118 Family Scaffolds
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 3.39
COG1404Serine protease, subtilisin familyPosttranslational modification, protein turnover, chaperones [O] 1.69
COG2009Succinate dehydrogenase/fumarate reductase, cytochrome b subunitEnergy production and conversion [C] 0.85
COG2142Succinate dehydrogenase, hydrophobic anchor subunitEnergy production and conversion [C] 0.85
COG2764Zn-dependent glyoxalase, PhnB familyEnergy production and conversion [C] 0.85
COG3865Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferaseGeneral function prediction only [R] 0.85
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 0.85
COG5654Predicted toxin component of a toxin-antitoxin system, contains RES domainDefense mechanisms [V] 0.85


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.31 %
All OrganismsrootAll Organisms1.69 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005333|Ga0070677_10004533All Organisms → cellular organisms → Bacteria → Proteobacteria4535Open in IMG/M
3300005834|Ga0068851_10271134All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. P8968Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere10.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere9.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere8.47%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere7.63%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere6.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.78%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.24%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.24%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.24%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere3.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere2.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.54%
Glacier ValleyEnvironmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley1.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.69%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.69%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.69%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.69%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.69%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.85%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.85%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.85%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.85%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.85%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.85%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009774Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaGEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300010869Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015208Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022904Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6EnvironmentalOpen in IMG/M
3300023169Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L081-202R-4EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025147Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025271Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062589_10157692323300004156SoilGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLA*
Ga0070658_1127343413300005327Corn RhizosphereRVAIMALDGSRTRSQRFLDLELFTTREEAGERVVAVARAWIDANAGNDQLSLPTNFSPLD
Ga0070690_10090404633300005330Switchgrass RhizosphereDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0070670_10095032423300005331Switchgrass RhizosphereVAIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD*
Ga0070677_1000453393300005333Miscanthus RhizosphereFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE*
Ga0068868_10054163213300005338Miscanthus RhizosphereYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0070689_10184349813300005340Switchgrass RhizosphereVAILALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE*
Ga0070661_10048831323300005344Corn RhizosphereLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD*
Ga0070668_10050296913300005347Switchgrass RhizosphereRYRARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD*
Ga0070668_10202185013300005347Switchgrass RhizosphereAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0070671_10104409113300005355Switchgrass RhizosphereMDNGRYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0070673_10204015713300005364Switchgrass RhizosphereALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE*
Ga0070688_10117897423300005365Switchgrass RhizosphereTRSQRFIDLEVFPSLEEAGERVVAVARAWIDANAFNDQLALPTNFSPLD*
Ga0070667_10050424733300005367Switchgrass RhizosphereSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD*
Ga0070694_10107101913300005444Corn, Switchgrass And Miscanthus RhizosphereVSTPVENGRYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD*
Ga0070663_10046332213300005455Corn RhizosphereDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD*
Ga0070678_10052097813300005456Miscanthus RhizosphereFLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD*
Ga0070678_10147324823300005456Miscanthus RhizosphereRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE*
Ga0070662_10137190123300005457Corn RhizosphereSTPLENGRYRARVAIMALEGTRTRSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD*
Ga0068867_10097941533300005459Miscanthus RhizosphereRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0070684_10220347513300005535Corn RhizosphereARVAIMALDGTRTRSQRFLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD*
Ga0070672_10094748413300005543Miscanthus RhizosphereQTRSQRFLDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSPLD*
Ga0070686_10021981013300005544Switchgrass RhizosphereRYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD*
Ga0070665_10081711913300005548Switchgrass RhizosphereVALEGTRTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID*
Ga0070665_10191012023300005548Switchgrass RhizosphereLEVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD*
Ga0068864_10136326713300005618Switchgrass RhizosphereRYRARVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE*
Ga0068851_1023058023300005834Corn RhizosphereLALDGERTRSQRFIDLEVFKTREEANERVATVARAWIDENAGIDRLALPTNFMSLE*
Ga0068851_1027113413300005834Corn RhizosphereTREEAGERVVAVARAWIDANAGNDQLSLPTNFSPLD*
Ga0068851_1049131133300005834Corn RhizosphereRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE*
Ga0068851_1065388723300005834Corn RhizosphereSQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD*
Ga0068851_1067122313300005834Corn RhizosphereEEAGERVVAVARAWIDANAGNDQLALPTNFAALD*
Ga0068870_1101415213300005840Miscanthus RhizosphereYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPTNFSPLD*
Ga0068863_10230898313300005841Switchgrass RhizosphereLALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE*
Ga0068863_10241193123300005841Switchgrass RhizosphereVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0068858_10143321713300005842Switchgrass RhizosphereRARVAILALDGERTRSQRFIDLEVFKTRQEAGERVVTVARAWIDENAGNDRLDLPTNFTLLE*
Ga0068860_10136880713300005843Switchgrass RhizosphereLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0068871_10123713423300006358Miscanthus RhizosphereVAIMALDGTRTRSQRFLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD*
Ga0068865_10015225613300006881Miscanthus RhizosphereLDGERTRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE*
Ga0068865_10050307613300006881Miscanthus RhizosphereVAILALDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE*
Ga0068865_10074389513300006881Miscanthus RhizosphereALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0068865_10086547423300006881Miscanthus RhizosphereTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFSPLD*
Ga0068865_10148298423300006881Miscanthus RhizosphereRTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID*
Ga0105245_1180393313300009098Miscanthus RhizosphereTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD*
Ga0105243_1150027123300009148Miscanthus RhizosphereLEVFPTRAEAGDRVVAVARAWIDANAGTDQLALPTNFSPLD*
Ga0111538_1007521033300009156Populus RhizosphereVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD*
Ga0111538_1204087523300009156Populus RhizosphereYRARVAILALDGERTRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE*
Ga0105242_1180001123300009176Miscanthus RhizosphereRARSQRSIGREVCPSRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0105249_1272978513300009553Switchgrass RhizosphereTQTRSQRFIDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSPLD*
Ga0123339_1023843413300009774Glacier ValleyRFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSALD*
Ga0126311_1091847113300010045Serpentine SoilRFIDLEVFRTAAEAGERVVTAARAWIDANAGRDQLALPTNFSPLD*
Ga0134122_1031137023300010400Terrestrial SoilMYKGYTYTGVTTRNDAGRYVARVAIMALDGSRTRSQRFIDLETYPSRDAAHDRVVTVARAWIDANLDPERLELPSRFSPLV*
Ga0134123_1100436423300010403Terrestrial SoilDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANAGKEPLALPTNFSSLD*
Ga0126359_113200723300010869Boreal Forest SoilGQYRARVAIMALDGTRTRSQRFIDLEIFRTSAEAYERVLTVAKAWIDADAGSDRLALPTNFSALD*
Ga0105246_1119562623300011119Miscanthus RhizosphereRQEANERVVTVARAWIDENAGNDRLDLPTNFTPLK*
Ga0164308_1187787123300012985SoilADVSTPMDNGRYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0157370_1135172523300013104Corn RhizosphereDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD*
Ga0157374_1016708053300013296Miscanthus RhizosphereRVAIMALEGTRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD
Ga0163163_1105831113300014325Switchgrass RhizosphereTRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD*
Ga0157380_1250466513300014326Switchgrass RhizosphereLDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0157379_1033363333300014968Switchgrass RhizosphereQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE*
Ga0157379_1054250913300014968Switchgrass RhizosphereDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE*
Ga0157379_1062738013300014968Switchgrass RhizosphereRYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE*
Ga0157379_1092954813300014968Switchgrass RhizosphereADVSTPMENGRYRARVAILALDGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE*
Ga0157376_1108608813300014969Miscanthus RhizosphereRGYTFADVSTPVENGRYRARVAIMALEGSRTRSQRFIDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD*
Ga0157376_1186401613300014969Miscanthus RhizosphereEGTRTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID*
Ga0173480_1035445723300015200SoilAIMALDGSRTRSQRFLDLELFHTREEAGERVVAVARAWIDANAEKDQLALPTNFSPLD*
Ga0173478_1016151713300015201SoilYRARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD*
Ga0173478_1069319613300015201SoilREEAGERVVAVARAWIDANAEKDQLALPTNFSPLD*
Ga0167664_105947013300015208Glacier Forefield SoilTRTRSQRFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSVLD*
Ga0132258_1169727623300015371Arabidopsis RhizosphereMDNGRYRARVAIIALDGTRTRSQRFIDLEVFPSRAEAGDRVVTVARAWIDANAGHDQLALPTNFSPLD*
Ga0132257_10418889523300015373Arabidopsis RhizosphereDGTRTRSQRFLDLEVFFTPEEAGERVVAGARAWIDATAERDQLALPTNFSPLD*
Ga0163161_1038540323300017792Switchgrass RhizosphereDGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE
Ga0163161_1075864323300017792Switchgrass RhizosphereRVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE
Ga0173479_1024097313300019362SoilLDGERTRSQRFIDLEVFKTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE
Ga0247769_114281113300022904Plant LitterKTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE
Ga0247762_115531723300023169Plant LitterIDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD
Ga0247794_1035888913300024055SoilLDGSRTRSQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD
Ga0209511_103247453300025147Glacier ValleyHYRARVAIMALDGTRTRSQRFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSALD
Ga0207666_101996313300025271Corn, Switchgrass And Miscanthus RhizosphereRVAIMALDGTRTRSQRFLDLELYTTPEEAGERVVVVARAWIDANAFKDQLALPTNFSPMD
Ga0207680_1077330023300025903Switchgrass RhizosphereSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE
Ga0207645_1054754123300025907Miscanthus RhizosphereLEGSRTRSQRFIDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD
Ga0207705_1005873113300025909Corn RhizosphereAIMALDGSRTRSQRFLDLELFTTREEAGERVVAVARAWIDANAGNDQLALPTNFAALD
Ga0207705_1100755623300025909Corn RhizosphereGRYRARVAIMALEGTRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD
Ga0207649_1056290213300025920Corn RhizosphereGRYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD
Ga0207649_1107181123300025920Corn RhizosphereEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD
Ga0207681_1085407613300025923Switchgrass RhizosphereVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE
Ga0207650_1014506813300025925Switchgrass RhizosphereFPTPEEAGARVVAVARAWIDSNAGRDQLALPTNFSPLD
Ga0207659_1095023833300025926Miscanthus RhizosphereQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD
Ga0207687_1014908723300025927Miscanthus RhizosphereLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD
Ga0207701_1000845313300025930Corn, Switchgrass And Miscanthus RhizosphereEVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD
Ga0207701_1003596033300025930Corn, Switchgrass And Miscanthus RhizosphereRVAILALDGTQTRSQRFIDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSSLD
Ga0207706_1112058013300025933Corn RhizosphereKGYTFADVSTPLENGRYRARVAIMALEGTRTRSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD
Ga0207686_1018295113300025934Miscanthus RhizosphereALEGTRARSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD
Ga0207669_1047092523300025937Miscanthus RhizosphereAIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANAGKEPLALPTNFSSLD
Ga0207691_1002326013300025940Miscanthus RhizosphereLALDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE
Ga0207691_1010690973300025940Miscanthus RhizosphereAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE
Ga0207691_1012528143300025940Miscanthus RhizosphereAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE
Ga0207691_1041062713300025940Miscanthus RhizosphereLEVFASAQEAGERVVTVARAWIDANAGNDQLALPTNFAALD
Ga0207711_1082405323300025941Switchgrass RhizosphereTRQEAGERVVTVARAWIDENAGNDRLDLPTNFTSLK
Ga0207711_1170672613300025941Switchgrass RhizosphereRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD
Ga0207711_1191031313300025941Switchgrass RhizosphereKTRQEAGERVVTVARAWIDENAGNDRLDLPTNFTLLE
Ga0207679_1060393223300025945Corn RhizosphereSAQEAGDRVVTVARAGIDANAGNDQLALPTNFAALD
Ga0207679_1106563113300025945Corn RhizosphereRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE
Ga0207712_1203013713300025961Switchgrass RhizosphereAIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLAPPTNFSSLD
Ga0207677_1062682923300026023Miscanthus RhizosphereTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE
Ga0207677_1145840913300026023Miscanthus RhizosphereARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPL
Ga0207639_1188243213300026041Corn RhizosphereLDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE
Ga0207641_1074741423300026088Switchgrass RhizosphereIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE
Ga0207676_1035393913300026095Switchgrass RhizosphereILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE
Ga0207675_10104695513300026118Switchgrass RhizosphereVAILALDGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE
Ga0207683_1142842813300026121Miscanthus RhizosphereRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE
Ga0207698_1075769623300026142Corn RhizosphereNGRYRARVAIMALDGSRTRSQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD
Ga0207698_1109004223300026142Corn RhizosphereFASAQEAGERVVTVARAWIDANAGNDQLALPTNFAALD
Ga0268266_1189523423300028379Switchgrass RhizosphereDLEVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD
Ga0307407_1152790023300031903RhizosphereSRTRFQRFLDLETFKTKDEASARVQVAAVAWIESDIGRDRLALPTNFGVFD
Ga0308174_1123218613300031939SoilPLENGRYRARVAIMALDGTRTRSQRFLDLEVFASQDEASERVVRVARAWIDANEGQDQLALPTNFSPLD
Ga0308173_1231722313300032074SoilQDEASERVVRVARAWIDANDGQDQLALPTNFSPLD
Ga0247829_1077666613300033550SoilLEVFKTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE


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