Basic Information | |
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Family ID | F076137 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 118 |
Average Sequence Length | 53 residues |
Representative Sequence | TRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 1.69 % |
% of genes from short scaffolds (< 2000 bps) | 0.85 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.46 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (98.305 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (10.169 % of family members) |
Environment Ontology (ENVO) | Unclassified (73.729 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (83.051 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.58% β-sheet: 0.00% Coil/Unstructured: 73.42% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.46 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 118 Family Scaffolds |
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PF13487 | HD_5 | 11.02 |
PF01243 | Putative_PNPOx | 8.47 |
PF01966 | HD | 5.93 |
PF00196 | GerE | 5.08 |
PF07859 | Abhydrolase_3 | 3.39 |
PF09995 | MPAB_Lcp_cat | 3.39 |
PF02558 | ApbA | 3.39 |
PF13683 | rve_3 | 1.69 |
PF05922 | Inhibitor_I9 | 1.69 |
PF08808 | RES | 0.85 |
PF13193 | AMP-binding_C | 0.85 |
PF13358 | DDE_3 | 0.85 |
PF07589 | PEP-CTERM | 0.85 |
PF05988 | DUF899 | 0.85 |
PF00378 | ECH_1 | 0.85 |
PF06983 | 3-dmu-9_3-mt | 0.85 |
PF03480 | DctP | 0.85 |
PF01163 | RIO1 | 0.85 |
PF05598 | DUF772 | 0.85 |
PF13489 | Methyltransf_23 | 0.85 |
PF01127 | Sdh_cyt | 0.85 |
PF13191 | AAA_16 | 0.85 |
PF00072 | Response_reg | 0.85 |
COG ID | Name | Functional Category | % Frequency in 118 Family Scaffolds |
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COG0657 | Acetyl esterase/lipase | Lipid transport and metabolism [I] | 3.39 |
COG1404 | Serine protease, subtilisin family | Posttranslational modification, protein turnover, chaperones [O] | 1.69 |
COG2009 | Succinate dehydrogenase/fumarate reductase, cytochrome b subunit | Energy production and conversion [C] | 0.85 |
COG2142 | Succinate dehydrogenase, hydrophobic anchor subunit | Energy production and conversion [C] | 0.85 |
COG2764 | Zn-dependent glyoxalase, PhnB family | Energy production and conversion [C] | 0.85 |
COG3865 | Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase | General function prediction only [R] | 0.85 |
COG4312 | Predicted dithiol-disulfide oxidoreductase, DUF899 family | General function prediction only [R] | 0.85 |
COG5654 | Predicted toxin component of a toxin-antitoxin system, contains RES domain | Defense mechanisms [V] | 0.85 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 98.31 % |
All Organisms | root | All Organisms | 1.69 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300005333|Ga0070677_10004533 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 4535 | Open in IMG/M |
3300005834|Ga0068851_10271134 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. P8 | 968 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 10.17% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 9.32% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 8.47% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 7.63% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 6.78% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 6.78% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 5.08% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.24% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 4.24% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 4.24% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 3.39% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.54% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 2.54% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.54% |
Glacier Valley | Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley | 1.69% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.69% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 1.69% |
Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 1.69% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.69% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.69% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.69% |
Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.85% |
Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.85% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.85% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.85% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.85% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.85% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.85% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.85% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.85% |
Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.85% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Host-Associated | Open in IMG/M |
3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Environmental | Open in IMG/M |
3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Host-Associated | Open in IMG/M |
3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
3300009774 | Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG | Environmental | Open in IMG/M |
3300010045 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 | Environmental | Open in IMG/M |
3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
3300010869 | Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
3300015200 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2) | Environmental | Open in IMG/M |
3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
3300015208 | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface) | Environmental | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
3300022904 | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6 | Environmental | Open in IMG/M |
3300023169 | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L081-202R-4 | Environmental | Open in IMG/M |
3300024055 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6 | Environmental | Open in IMG/M |
3300025147 | Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG (SPAdes) | Environmental | Open in IMG/M |
3300025271 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) | Environmental | Open in IMG/M |
3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Host-Associated | Open in IMG/M |
3300031939 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 | Environmental | Open in IMG/M |
3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0062589_1015769232 | 3300004156 | Soil | GERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLA* |
Ga0070658_112734341 | 3300005327 | Corn Rhizosphere | RVAIMALDGSRTRSQRFLDLELFTTREEAGERVVAVARAWIDANAGNDQLSLPTNFSPLD |
Ga0070690_1009040463 | 3300005330 | Switchgrass Rhizosphere | DLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0070670_1009503242 | 3300005331 | Switchgrass Rhizosphere | VAIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD* |
Ga0070677_100045339 | 3300005333 | Miscanthus Rhizosphere | FIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE* |
Ga0068868_1005416321 | 3300005338 | Miscanthus Rhizosphere | YRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0070689_1018434981 | 3300005340 | Switchgrass Rhizosphere | VAILALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE* |
Ga0070661_1004883132 | 3300005344 | Corn Rhizosphere | LDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD* |
Ga0070668_1005029691 | 3300005347 | Switchgrass Rhizosphere | RYRARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD* |
Ga0070668_1020218501 | 3300005347 | Switchgrass Rhizosphere | AILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0070671_1010440911 | 3300005355 | Switchgrass Rhizosphere | MDNGRYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0070673_1020401571 | 3300005364 | Switchgrass Rhizosphere | ALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE* |
Ga0070688_1011789742 | 3300005365 | Switchgrass Rhizosphere | TRSQRFIDLEVFPSLEEAGERVVAVARAWIDANAFNDQLALPTNFSPLD* |
Ga0070667_1005042473 | 3300005367 | Switchgrass Rhizosphere | SQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD* |
Ga0070694_1010710191 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | VSTPVENGRYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD* |
Ga0070663_1004633221 | 3300005455 | Corn Rhizosphere | DLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD* |
Ga0070678_1005209781 | 3300005456 | Miscanthus Rhizosphere | FLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD* |
Ga0070678_1014732482 | 3300005456 | Miscanthus Rhizosphere | RSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE* |
Ga0070662_1013719012 | 3300005457 | Corn Rhizosphere | STPLENGRYRARVAIMALEGTRTRSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD* |
Ga0068867_1009794153 | 3300005459 | Miscanthus Rhizosphere | RSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0070684_1022034751 | 3300005535 | Corn Rhizosphere | ARVAIMALDGTRTRSQRFLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD* |
Ga0070672_1009474841 | 3300005543 | Miscanthus Rhizosphere | QTRSQRFLDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSPLD* |
Ga0070686_1002198101 | 3300005544 | Switchgrass Rhizosphere | RYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD* |
Ga0070665_1008171191 | 3300005548 | Switchgrass Rhizosphere | VALEGTRTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID* |
Ga0070665_1019101202 | 3300005548 | Switchgrass Rhizosphere | LEVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD* |
Ga0068864_1013632671 | 3300005618 | Switchgrass Rhizosphere | RYRARVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE* |
Ga0068851_102305802 | 3300005834 | Corn Rhizosphere | LALDGERTRSQRFIDLEVFKTREEANERVATVARAWIDENAGIDRLALPTNFMSLE* |
Ga0068851_102711341 | 3300005834 | Corn Rhizosphere | TREEAGERVVAVARAWIDANAGNDQLSLPTNFSPLD* |
Ga0068851_104913113 | 3300005834 | Corn Rhizosphere | RSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE* |
Ga0068851_106538872 | 3300005834 | Corn Rhizosphere | SQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD* |
Ga0068851_106712231 | 3300005834 | Corn Rhizosphere | EEAGERVVAVARAWIDANAGNDQLALPTNFAALD* |
Ga0068870_110141521 | 3300005840 | Miscanthus Rhizosphere | YRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPTNFSPLD* |
Ga0068863_1023089831 | 3300005841 | Switchgrass Rhizosphere | LALDGERTRSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE* |
Ga0068863_1024119312 | 3300005841 | Switchgrass Rhizosphere | VAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0068858_1014332171 | 3300005842 | Switchgrass Rhizosphere | RARVAILALDGERTRSQRFIDLEVFKTRQEAGERVVTVARAWIDENAGNDRLDLPTNFTLLE* |
Ga0068860_1013688071 | 3300005843 | Switchgrass Rhizosphere | LEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0068871_1012371342 | 3300006358 | Miscanthus Rhizosphere | VAIMALDGTRTRSQRFLDLEVFFSLEEAGERVVAVARAWIDANAERDQLALPTNFSPLD* |
Ga0068865_1001522561 | 3300006881 | Miscanthus Rhizosphere | LDGERTRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE* |
Ga0068865_1005030761 | 3300006881 | Miscanthus Rhizosphere | VAILALDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE* |
Ga0068865_1007438951 | 3300006881 | Miscanthus Rhizosphere | ALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0068865_1008654742 | 3300006881 | Miscanthus Rhizosphere | TRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFSPLD* |
Ga0068865_1014829842 | 3300006881 | Miscanthus Rhizosphere | RTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID* |
Ga0105245_118039331 | 3300009098 | Miscanthus Rhizosphere | TRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD* |
Ga0105243_115002712 | 3300009148 | Miscanthus Rhizosphere | LEVFPTRAEAGDRVVAVARAWIDANAGTDQLALPTNFSPLD* |
Ga0111538_100752103 | 3300009156 | Populus Rhizosphere | VALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD* |
Ga0111538_120408752 | 3300009156 | Populus Rhizosphere | YRARVAILALDGERTRSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE* |
Ga0105242_118000112 | 3300009176 | Miscanthus Rhizosphere | RARSQRSIGREVCPSRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0105249_127297851 | 3300009553 | Switchgrass Rhizosphere | TQTRSQRFIDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSPLD* |
Ga0123339_102384341 | 3300009774 | Glacier Valley | RFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSALD* |
Ga0126311_109184711 | 3300010045 | Serpentine Soil | RFIDLEVFRTAAEAGERVVTAARAWIDANAGRDQLALPTNFSPLD* |
Ga0134122_103113702 | 3300010400 | Terrestrial Soil | MYKGYTYTGVTTRNDAGRYVARVAIMALDGSRTRSQRFIDLETYPSRDAAHDRVVTVARAWIDANLDPERLELPSRFSPLV* |
Ga0134123_110043642 | 3300010403 | Terrestrial Soil | DGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANAGKEPLALPTNFSSLD* |
Ga0126359_11320072 | 3300010869 | Boreal Forest Soil | GQYRARVAIMALDGTRTRSQRFIDLEIFRTSAEAYERVLTVAKAWIDADAGSDRLALPTNFSALD* |
Ga0105246_111956262 | 3300011119 | Miscanthus Rhizosphere | RQEANERVVTVARAWIDENAGNDRLDLPTNFTPLK* |
Ga0164308_118778712 | 3300012985 | Soil | ADVSTPMDNGRYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0157370_113517252 | 3300013104 | Corn Rhizosphere | DGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD* |
Ga0157374_101670805 | 3300013296 | Miscanthus Rhizosphere | RVAIMALEGTRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD |
Ga0163163_110583111 | 3300014325 | Switchgrass Rhizosphere | TRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD* |
Ga0157380_125046651 | 3300014326 | Switchgrass Rhizosphere | LDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0157379_103336333 | 3300014968 | Switchgrass Rhizosphere | QRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE* |
Ga0157379_105425091 | 3300014968 | Switchgrass Rhizosphere | DGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE* |
Ga0157379_106273801 | 3300014968 | Switchgrass Rhizosphere | RYRARVAIMALDGTRTRSQRFIDLEVFPTRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE* |
Ga0157379_109295481 | 3300014968 | Switchgrass Rhizosphere | ADVSTPMENGRYRARVAILALDGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE* |
Ga0157376_110860881 | 3300014969 | Miscanthus Rhizosphere | RGYTFADVSTPVENGRYRARVAIMALEGSRTRSQRFIDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD* |
Ga0157376_118640161 | 3300014969 | Miscanthus Rhizosphere | EGTRTRSQRFLDLETFKTREEASARVHAAAIAWIDADIGRDRLALPTNFSTLID* |
Ga0173480_103544572 | 3300015200 | Soil | AIMALDGSRTRSQRFLDLELFHTREEAGERVVAVARAWIDANAEKDQLALPTNFSPLD* |
Ga0173478_101615171 | 3300015201 | Soil | YRARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD* |
Ga0173478_106931961 | 3300015201 | Soil | REEAGERVVAVARAWIDANAEKDQLALPTNFSPLD* |
Ga0167664_10594701 | 3300015208 | Glacier Forefield Soil | TRTRSQRFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSVLD* |
Ga0132258_116972762 | 3300015371 | Arabidopsis Rhizosphere | MDNGRYRARVAIIALDGTRTRSQRFIDLEVFPSRAEAGDRVVTVARAWIDANAGHDQLALPTNFSPLD* |
Ga0132257_1041888952 | 3300015373 | Arabidopsis Rhizosphere | DGTRTRSQRFLDLEVFFTPEEAGERVVAGARAWIDATAERDQLALPTNFSPLD* |
Ga0163161_103854032 | 3300017792 | Switchgrass Rhizosphere | DGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE |
Ga0163161_107586432 | 3300017792 | Switchgrass Rhizosphere | RVAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE |
Ga0173479_102409731 | 3300019362 | Soil | LDGERTRSQRFIDLEVFKTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE |
Ga0247769_11428111 | 3300022904 | Plant Litter | KTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE |
Ga0247762_11553172 | 3300023169 | Plant Litter | IDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD |
Ga0247794_103588891 | 3300024055 | Soil | LDGSRTRSQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD |
Ga0209511_10324745 | 3300025147 | Glacier Valley | HYRARVAIMALDGTRTRSQRFIDLEIFRTSEEAQERVMAVARAWIDANDGADRLALPTNFSALD |
Ga0207666_10199631 | 3300025271 | Corn, Switchgrass And Miscanthus Rhizosphere | RVAIMALDGTRTRSQRFLDLELYTTPEEAGERVVVVARAWIDANAFKDQLALPTNFSPMD |
Ga0207680_107733002 | 3300025903 | Switchgrass Rhizosphere | SQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE |
Ga0207645_105475412 | 3300025907 | Miscanthus Rhizosphere | LEGSRTRSQRFIDLEVFPTLEEAGERVVTVARAWIDANEGHDQLALPTNFAPLD |
Ga0207705_100587311 | 3300025909 | Corn Rhizosphere | AIMALDGSRTRSQRFLDLELFTTREEAGERVVAVARAWIDANAGNDQLALPTNFAALD |
Ga0207705_110075562 | 3300025909 | Corn Rhizosphere | GRYRARVAIMALEGTRTRSQRFIDLEVFLTPEEAGERVVTVARAWIDANAGHDQLALPTNFSPLD |
Ga0207649_105629021 | 3300025920 | Corn Rhizosphere | GRYRARVAIMALDGTQTRSQRFLDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD |
Ga0207649_110718112 | 3300025920 | Corn Rhizosphere | EVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD |
Ga0207681_108540761 | 3300025923 | Switchgrass Rhizosphere | VAILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE |
Ga0207650_101450681 | 3300025925 | Switchgrass Rhizosphere | FPTPEEAGARVVAVARAWIDSNAGRDQLALPTNFSPLD |
Ga0207659_109502383 | 3300025926 | Miscanthus Rhizosphere | QRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLALPTNFSSLD |
Ga0207687_101490872 | 3300025927 | Miscanthus Rhizosphere | LDLEVFSSLEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD |
Ga0207701_100084531 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | EVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD |
Ga0207701_100359603 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | RVAILALDGTQTRSQRFIDLEVFATPEQAGERVVAVARAWIDANAGRDQLALPTNFSSLD |
Ga0207706_111205801 | 3300025933 | Corn Rhizosphere | KGYTFADVSTPLENGRYRARVAIMALEGTRTRSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD |
Ga0207686_101829511 | 3300025934 | Miscanthus Rhizosphere | ALEGTRARSQRFIDLEVFPTRAEAGERVVKVARAWIDANADQDELALPTNFSPLD |
Ga0207669_104709252 | 3300025937 | Miscanthus Rhizosphere | AIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANAGKEPLALPTNFSSLD |
Ga0207691_100232601 | 3300025940 | Miscanthus Rhizosphere | LALDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE |
Ga0207691_101069097 | 3300025940 | Miscanthus Rhizosphere | AILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE |
Ga0207691_101252814 | 3300025940 | Miscanthus Rhizosphere | AILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE |
Ga0207691_104106271 | 3300025940 | Miscanthus Rhizosphere | LEVFASAQEAGERVVTVARAWIDANAGNDQLALPTNFAALD |
Ga0207711_108240532 | 3300025941 | Switchgrass Rhizosphere | TRQEAGERVVTVARAWIDENAGNDRLDLPTNFTSLK |
Ga0207711_117067261 | 3300025941 | Switchgrass Rhizosphere | RSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPLD |
Ga0207711_119103131 | 3300025941 | Switchgrass Rhizosphere | KTRQEAGERVVTVARAWIDENAGNDRLDLPTNFTLLE |
Ga0207679_106039322 | 3300025945 | Corn Rhizosphere | SAQEAGDRVVTVARAGIDANAGNDQLALPTNFAALD |
Ga0207679_110656311 | 3300025945 | Corn Rhizosphere | RSQRFIDLEVFKTREEANERVVTVAMAWIDENAGIDRLALPTNFMSLE |
Ga0207712_120301371 | 3300025961 | Switchgrass Rhizosphere | AIVALDGTRTRSQRFLDLEVFRTREQASERATTGAMAWIDANSGKEPLAPPTNFSSLD |
Ga0207677_106268292 | 3300026023 | Miscanthus Rhizosphere | TRAEAGERVVTVARAWIDANAGHDELALPSNFSPFE |
Ga0207677_114584091 | 3300026023 | Miscanthus Rhizosphere | ARVAIMALDGSRTRSQRFIDLEVFPTREEAGERVVVVARAWIDANEGHDQLALPTNFAPL |
Ga0207639_118824321 | 3300026041 | Corn Rhizosphere | LDGERTRSQRFIDLEVFKTREEANERVITVARAWIDENAGNDRLALPTNFTLLE |
Ga0207641_107474142 | 3300026088 | Switchgrass Rhizosphere | IDLEVFKTRQEANERVVTVARAWIDENAGNDRLDLPTNFTLLE |
Ga0207676_103539391 | 3300026095 | Switchgrass Rhizosphere | ILALDGERTRSQRFIDLEVFKTRQEANERVVTVARAWIDENAGNDRLSLPTNFTSLE |
Ga0207675_1010469551 | 3300026118 | Switchgrass Rhizosphere | VAILALDGTQTRSQRFIDLEVFHTLEEAGERVVTVARAWIDANAGRDQLALPTNFTSLE |
Ga0207683_114284281 | 3300026121 | Miscanthus Rhizosphere | RSQRFIDLEVFKTEQEANERVVRVAKAWIDENAGKDQLALPTNFTSLE |
Ga0207698_107576962 | 3300026142 | Corn Rhizosphere | NGRYRARVAIMALDGSRTRSQRFLDLEVFPTRAEAGDRVVAVARAWIDANAGSDQLALPTNFSPFD |
Ga0207698_110900422 | 3300026142 | Corn Rhizosphere | FASAQEAGERVVTVARAWIDANAGNDQLALPTNFAALD |
Ga0268266_118952342 | 3300028379 | Switchgrass Rhizosphere | DLEVFSSMEEAGERVVAVARAWIDANAFKDQLALPTNFSPMD |
Ga0307407_115279002 | 3300031903 | Rhizosphere | SRTRFQRFLDLETFKTKDEASARVQVAAVAWIESDIGRDRLALPTNFGVFD |
Ga0308174_112321861 | 3300031939 | Soil | PLENGRYRARVAIMALDGTRTRSQRFLDLEVFASQDEASERVVRVARAWIDANEGQDQLALPTNFSPLD |
Ga0308173_123172231 | 3300032074 | Soil | QDEASERVVRVARAWIDANDGQDQLALPTNFSPLD |
Ga0247829_107766661 | 3300033550 | Soil | LEVFKTRQEAGERVVTVARAWIDENAGNDRLALPTNFTLLE |
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