Metagenome / Metatranscriptome Family F076048

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F076048
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	92 residues
Representative Sequence	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVLWFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGSYDTI
Number of Associated Samples	98
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.05 %
% of genes near scaffold ends (potentially truncated)	41.53 %
% of genes from short scaffolds (< 2000 bps)	82.20 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (74.576 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (9.322 % of family members)
Environment Ontology (ENVO)	Unclassified (43.220 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.220 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 52.42% Coil/Unstructured: 47.58%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
b.82.1.1: dTDP-sugar isomerase	d2ixka_	2ixk	0.73719
b.82.1.7: Glucose-6-phosphate isomerase, GPI	d1x82a1	1x82	0.73037
b.82.1.2: Germin/Seed storage 7S protein	d1fi2a_	1fi2	0.72961
b.82.1.1: dTDP-sugar isomerase	d1wlta1	1wlt	0.72799
b.82.1.0: automated matches	d5buva1	5buv	0.72174

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12680	SnoaL_2	5.93
PF00903	Glyoxalase	5.08
PF04828	GFA	4.24
PF01230	HIT	4.24
PF01315	Ald_Xan_dh_C	2.54
PF00890	FAD_binding_2	2.54
PF03928	HbpS-like	2.54
PF13417	GST_N_3	1.69
PF12681	Glyoxalase_2	1.69
PF02798	GST_N	1.69
PF07110	EthD	1.69
PF08818	DUF1801	1.69
PF03401	TctC	1.69
PF10502	Peptidase_S26	0.85
PF13964	Kelch_6	0.85
PF00484	Pro_CA	0.85
PF13551	HTH_29	0.85
PF01408	GFO_IDH_MocA	0.85
PF01075	Glyco_transf_9	0.85
PF00012	HSP70	0.85
PF00561	Abhydrolase_1	0.85
PF04191	PEMT	0.85
PF00102	Y_phosphatase	0.85
PF01494	FAD_binding_3	0.85
PF01609	DDE_Tnp_1	0.85
PF03481	Sua5_C	0.85
PF00596	Aldolase_II	0.85
PF05721	PhyH	0.85
PF13472	Lipase_GDSL_2	0.85
PF04343	DUF488	0.85
PF00583	Acetyltransf_1	0.85
PF00581	Rhodanese	0.85
PF13561	adh_short_C2	0.85
PF02627	CMD	0.85
PF00497	SBP_bac_3	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	4.24
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.69
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.69
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.69
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.69
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.69
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85
COG5599	Protein tyrosine phosphatase	Signal transduction mechanisms [T]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.85
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG2453	Protein-tyrosine phosphatase	Signal transduction mechanisms [T]	0.85
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.85
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.85
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.58 %
Unclassified	root	N/A	25.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.58 %
Unclassified	root	N/A	25.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.58 %
Unclassified	root	N/A	25.42 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.17 %
Unclassified	root	N/A	25.42 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	29.66 %
Unclassified	root	N/A	25.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.54 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.42 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	11.86 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.63 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.39 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.69 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.42 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	11.02 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	5.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.69 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.69 %
Sulfuricellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae	0.85 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.85 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.85 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.85 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.42 %
Sideroxydans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans	11.02 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	5.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.69 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.69 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.85 %
Sulfuriferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula	0.85 %
Erythrobacter/Porphyrobacter group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group	0.85 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	0.85 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.85 %
Aquabacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.42 %
unclassified Sideroxydans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans	11.02 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	5.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.69 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.69 %
Sulfuriferula multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	0.85 %
Roseomonas aerilata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata	0.85 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.85 %
Aquabacterium commune	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium commune	0.85 %
Erythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter	0.85 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.42 %
Sideroxydans sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	11.02 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	5.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.69 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.69 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.69 %
Massilia glaciei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia glaciei	0.85 %
Sulfuriferula multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	0.85 %
Roseomonas aerilata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata	0.85 %
Aquabacterium commune	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium commune	0.85 %
Erythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter	0.85 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100697249	Not Available	572	Open in IMG/M
3300003369\|JGI24140J50213_10118834	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300004114\|Ga0062593_102239992	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300004153\|Ga0063455_100552216	Not Available	734	Open in IMG/M
3300004157\|Ga0062590_100776706	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300004643\|Ga0062591_100070877	All Organisms → cellular organisms → Bacteria → Proteobacteria	2108	Open in IMG/M
3300004643\|Ga0062591_101307474	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005162\|Ga0066814_10041253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	730	Open in IMG/M
3300005329\|Ga0070683_100350532	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300005330\|Ga0070690_100110637	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300005330\|Ga0070690_100214914	Not Available	1344	Open in IMG/M
3300005331\|Ga0070670_100967190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	773	Open in IMG/M
3300005332\|Ga0066388_105430520	Not Available	646	Open in IMG/M
3300005334\|Ga0068869_100000209	All Organisms → cellular organisms → Bacteria → Proteobacteria	30398	Open in IMG/M
3300005334\|Ga0068869_100407156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	1120	Open in IMG/M
3300005364\|Ga0070673_100544137	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300005440\|Ga0070705_100025421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas aerilata	3211	Open in IMG/M
3300005458\|Ga0070681_10204673	All Organisms → cellular organisms → Bacteria → Proteobacteria	1891	Open in IMG/M
3300005526\|Ga0073909_10133192	Not Available	1019	Open in IMG/M
3300005526\|Ga0073909_10671029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	517	Open in IMG/M
3300005535\|Ga0070684_102018139	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005539\|Ga0068853_100230811	All Organisms → cellular organisms → Bacteria → Proteobacteria	1693	Open in IMG/M
3300005563\|Ga0068855_101992831	Not Available	587	Open in IMG/M
3300005614\|Ga0068856_102268844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	551	Open in IMG/M
3300005994\|Ga0066789_10177390	Not Available	901	Open in IMG/M
3300006604\|Ga0074060_11804864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	842	Open in IMG/M
3300006605\|Ga0074057_12218415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	644	Open in IMG/M
3300006605\|Ga0074057_12336937	All Organisms → cellular organisms → Bacteria → Proteobacteria	1344	Open in IMG/M
3300006638\|Ga0075522_10364459	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300006755\|Ga0079222_10149087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1326	Open in IMG/M
3300006881\|Ga0068865_101380723	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300006953\|Ga0074063_13482315	Not Available	1022	Open in IMG/M
3300006953\|Ga0074063_13768010	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300007076\|Ga0075435_100432787	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300007076\|Ga0075435_100918596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	763	Open in IMG/M
3300007255\|Ga0099791_10245187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	849	Open in IMG/M
3300009100\|Ga0075418_11757224	Not Available	674	Open in IMG/M
3300009678\|Ga0105252_10089919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1219	Open in IMG/M
3300010046\|Ga0126384_10192211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	1608	Open in IMG/M
3300010046\|Ga0126384_11520483	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300010397\|Ga0134124_10293734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	1512	Open in IMG/M
3300010397\|Ga0134124_12876842	Not Available	525	Open in IMG/M
3300010398\|Ga0126383_11563439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	749	Open in IMG/M
3300010400\|Ga0134122_12330846	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300010403\|Ga0134123_10120331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2124	Open in IMG/M
3300011409\|Ga0137323_1028510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1237	Open in IMG/M
3300011416\|Ga0137422_1083862	Not Available	764	Open in IMG/M
3300011420\|Ga0137314_1020703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1637	Open in IMG/M
3300011423\|Ga0137436_1000249	All Organisms → cellular organisms → Bacteria → Proteobacteria	17240	Open in IMG/M
3300011442\|Ga0137437_1034321	All Organisms → cellular organisms → Bacteria → Proteobacteria	1738	Open in IMG/M
3300011442\|Ga0137437_1049216	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300011442\|Ga0137437_1101594	Not Available	986	Open in IMG/M
3300011444\|Ga0137463_1025351	All Organisms → cellular organisms → Bacteria → Proteobacteria	2146	Open in IMG/M
3300011444\|Ga0137463_1162527	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300012203\|Ga0137399_11069282	Not Available	679	Open in IMG/M
3300012212\|Ga0150985_107943823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	534	Open in IMG/M
3300012469\|Ga0150984_122158155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	741	Open in IMG/M
3300012476\|Ga0157344_1003281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	906	Open in IMG/M
3300012503\|Ga0157313_1050592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	540	Open in IMG/M
3300012685\|Ga0137397_10513885	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300012929\|Ga0137404_10295284	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300012944\|Ga0137410_10007539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	7377	Open in IMG/M
3300012944\|Ga0137410_10007753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7264	Open in IMG/M
3300012944\|Ga0137410_10920276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	740	Open in IMG/M
3300012960\|Ga0164301_10388142	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300012960\|Ga0164301_10395310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	966	Open in IMG/M
3300012961\|Ga0164302_10699286	Not Available	751	Open in IMG/M
3300012971\|Ga0126369_11879876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	687	Open in IMG/M
3300012984\|Ga0164309_10726624	Not Available	791	Open in IMG/M
3300012986\|Ga0164304_11605263	Not Available	542	Open in IMG/M
3300012988\|Ga0164306_10546754	Not Available	898	Open in IMG/M
3300012989\|Ga0164305_10145299	Not Available	1601	Open in IMG/M
3300012989\|Ga0164305_11767720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	557	Open in IMG/M
3300013297\|Ga0157378_10761196	Not Available	992	Open in IMG/M
3300014861\|Ga0180061_1067189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	598	Open in IMG/M
3300014969\|Ga0157376_10285484	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300014969\|Ga0157376_11934653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	627	Open in IMG/M
3300015245\|Ga0137409_10022380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	6201	Open in IMG/M
3300015371\|Ga0132258_11328861	All Organisms → cellular organisms → Bacteria → Proteobacteria	1817	Open in IMG/M
3300015371\|Ga0132258_13550462	Not Available	1067	Open in IMG/M
3300015372\|Ga0132256_102473701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	621	Open in IMG/M
3300015374\|Ga0132255_100090009	All Organisms → cellular organisms → Bacteria → Proteobacteria	4136	Open in IMG/M
3300017936\|Ga0187821_10125291	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300018083\|Ga0184628_10011451	All Organisms → cellular organisms → Bacteria → Proteobacteria	4282	Open in IMG/M
3300020170\|Ga0179594_10002129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia glaciei	4558	Open in IMG/M
3300024186\|Ga0247688_1020811	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300024219\|Ga0247665_1004404	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300024224\|Ga0247673_1016564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium commune	968	Open in IMG/M
3300024284\|Ga0247671_1002391	All Organisms → cellular organisms → Bacteria → Proteobacteria	3932	Open in IMG/M
3300025427\|Ga0208077_1057868	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300025464\|Ga0208076_1023282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter	1073	Open in IMG/M
3300025482\|Ga0208715_1022223	Not Available	1219	Open in IMG/M
3300025912\|Ga0207707_10319862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	1340	Open in IMG/M
3300025918\|Ga0207662_10106595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1743	Open in IMG/M
3300025941\|Ga0207711_10639185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	993	Open in IMG/M
3300025941\|Ga0207711_11119275	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300025944\|Ga0207661_10176518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1863	Open in IMG/M
3300025960\|Ga0207651_10423447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Sideroxydans → unclassified Sideroxydans → Sideroxydans sp.	1137	Open in IMG/M
3300026078\|Ga0207702_11423590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	687	Open in IMG/M
3300026088\|Ga0207641_10153864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2085	Open in IMG/M
3300026121\|Ga0207683_11596061	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300026142\|Ga0207698_10184944	All Organisms → cellular organisms → Bacteria → Proteobacteria	1850	Open in IMG/M
3300026291\|Ga0209890_10204361	Not Available	632	Open in IMG/M
3300027821\|Ga0209811_10004268	All Organisms → cellular organisms → Bacteria	4613	Open in IMG/M
3300027821\|Ga0209811_10019477	All Organisms → cellular organisms → Bacteria → Proteobacteria	2213	Open in IMG/M
3300028381\|Ga0268264_11981779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	592	Open in IMG/M
3300028792\|Ga0307504_10030002	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300031152\|Ga0307501_10059934	Not Available	875	Open in IMG/M
3300031938\|Ga0308175_102488611	Not Available	580	Open in IMG/M
3300031943\|Ga0310885_10414464	Not Available	720	Open in IMG/M
3300032205\|Ga0307472_101836960	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300033550\|Ga0247829_11777388	Not Available	508	Open in IMG/M
3300034149\|Ga0364929_0000634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7339	Open in IMG/M
3300034150\|Ga0364933_173388	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.03%
Host-Associated	Host-Associated	27.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.17%
Plants	Host-Associated → Plants	27.97%
Aquatic	Environmental → Aquatic	11.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.71%
Sediment	Environmental → Aquatic → Sediment	10.17%
Freshwater	Environmental → Aquatic → Freshwater	1.69%
Floodplain	Environmental → Terrestrial → Floodplain	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.17%
Loam	Environmental → Terrestrial → Soil → Loam	9.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.24%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.39%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.08%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.24%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.24%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.39%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.54%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.85%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024284	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006972491	3300000364	Soil	MEPGKIRLINRGEGGTEADFTQTIAVSVGNRVYRLTNNGAANGAPVTMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
JGI24140J50213_101188341	3300003369	Arctic Peat Soil	MEPGKIRLINSGGEQPDIAQTISYAITNRLYRVTNDGPGNGGPGLMRIAVSRSVLWWTINSTVDLESGRSVDVYGSSLTVTALTSLQLFGSYDTI*
Ga0062593_1022399922	3300004114	Soil	MEPGKIRLINTGGQDTAGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0063455_1005522161	3300004153	Soil	MEAGKIRLINTGNQNPAGFTQQIAVNAGNRLYRITNDGPGDNQPGNMRIWITRRTLFWSSTSIFELPAGRSVDVYGSSIKVEALETLQLFGSYDACCSS*
Ga0062590_1007767061	3300004157	Soil	GEKGMEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0062591_1000708774	3300004643	Soil	MEPGKIRLINRGEGGSEADFTQTIAASVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0062591_1013074742	3300004643	Soil	NSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0066814_100412531	3300005162	Soil	MEPGKIRLINRGEGGTEADFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTVGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0070676_104979581	3300005328	Miscanthus Rhizosphere	VSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGCYDTI*
Ga0070683_1003505323	3300005329	Corn Rhizosphere	MEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0070690_1001106374	3300005330	Switchgrass Rhizosphere	MMEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0070690_1002149141	3300005330	Switchgrass Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFG
Ga0070670_1009671901	3300005331	Switchgrass Rhizosphere	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTISSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI*
Ga0066388_1054305201	3300005332	Tropical Forest Soil	MEHGLIRLINSGEQGDASTQSIAVSVGNRLYRVTNNGSVNGGPGTMRIRIARTVLWFTINSVFDLTAGRSV
Ga0068869_10000020927	3300005334	Miscanthus Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0068869_1004071562	3300005334	Miscanthus Rhizosphere	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI*
Ga0070673_1005441373	3300005364	Switchgrass Rhizosphere	TQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFLSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0070705_1000254212	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGAPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0070681_102046735	3300005458	Corn Rhizosphere	GITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0073909_101331921	3300005526	Surface Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI*
Ga0073909_106710291	3300005526	Surface Soil	RLINSGGQSDAGFTQTIAVSVGNRLYRVTNTGTANGGPGTMRIRIARTVLWFTINSVFDLDAGRSVDVFGSTLSVIALDTLQLFGSYDTI*
Ga0070684_1020181392	3300005535	Corn Rhizosphere	MMEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVY
Ga0068853_1002308114	3300005539	Corn Rhizosphere	PGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0068855_1019928311	3300005563	Corn Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVAL
Ga0068856_1022688442	3300005614	Corn Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0066789_101773903	3300005994	Soil	MEPGKIRLINTGNQDEAGFTQTISLSPVNRLYRITNDGPGDASPGAMRIRISRTVFWRTVVSVFDLTSGRSVDVYGASITVLALETLQLFGTYDTI*
Ga0074060_118048642	3300006604	Soil	SGGQSDAGFTQTIAVSVGNRLYRVTNSGTANGGPGTMRIRIARTVLWFTINSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI*
Ga0074057_122184152	3300006605	Soil	GMEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVLWFTINSVFDLDAGRSVDVFGSTLSVIALDTLQLFGSYDTI*
Ga0074057_123369373	3300006605	Soil	MEPGKIRLINRGEGGTEADFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0075522_103644592	3300006638	Arctic Peat Soil	MEPGKIRLINTGNQNEAGFTQIISLLPTNRLYRITNDGPGDGAPGAMRIRISRKLLWWTVVSVFDLTSGRSVDVYGASITVLALESLQLFGTFDTIY*
Ga0079222_101490874	3300006755	Agricultural Soil	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDAL*
Ga0068865_1013807232	3300006881	Miscanthus Rhizosphere	MEPGKIRLINRGEGGTEADFTQTIAISVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0074063_134823152	3300006953	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNTGTANGGPGTMRIRIARTVLWFTINSVFDLDAGRSVDVFGSTLSVIALDTLQLFGSYDTI*
Ga0074063_137680103	3300006953	Soil	GEGGTEADFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0075435_1004327873	3300007076	Populus Rhizosphere	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRITNNGGVNGAPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDAL*
Ga0075435_1009185962	3300007076	Populus Rhizosphere	FTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI*
Ga0099791_102451872	3300007255	Vadose Zone Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIHIARTVLWFTINSVFDLTAGRSVDVLGSTLSVIALDTLELFGSYDTI*
Ga0075418_117572241	3300009100	Populus Rhizosphere	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVLWFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGSYDTI*
Ga0105252_100899192	3300009678	Soil	EPGKIHLLNAGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI*
Ga0126384_101922112	3300010046	Tropical Forest Soil	MEHGLIRLINAGEQGDESTQTIAVSVGNRLYRITNNGSLNGGPGTMRIRIARTVLWFTIHSFFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDAI*
Ga0126384_115204832	3300010046	Tropical Forest Soil	MEPGKIRLINSGGQDPSGFTQTIAIAIYNRLYRVTNDGPGNGQPGAMRIRIARTFFWFTINSVFDLPAGRSVDVYGATIEVAALETLQLFGSYDTI*
Ga0134124_102937342	3300010397	Terrestrial Soil	MEPGKIRLINTGGQSDAGFTQTIAVSVGNRLYRVTNNGGANGGPGTMRIRITRTVFGFSVNSVFDLTAGRSVDVIGSTLSVVALDTLQLFGSYDTI*
Ga0134124_128768422	3300010397	Terrestrial Soil	TQQIAVNVGNRLYRITNDGPGDNQPGNMRIWITRQYLFWTSVSIFELPAGRSVDVYGSSIKVEALETLQLFGSYDACCTS*
Ga0126383_115634392	3300010398	Tropical Forest Soil	MEPGKIRLINSGGQDPSGFTQTIALAVYNRLYRITNDGPGNGQPGEMRIRISRTFFWFTINSVFDLPAGRSVDVYGATIVVLALETLQLFGSYDTI*
Ga0134122_123308461	3300010400	Terrestrial Soil	SLGNIIAHLDEDGKGESMEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI*
Ga0134123_101203314	3300010403	Terrestrial Soil	MEPGKIRLINRGEGGSEADFTQTIAASVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACCWPSQATGLVVARLRLR
Ga0137323_10285101	3300011409	Soil	MEPGKIHLLNAGCGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYRHTLSVVALTSLQLFGSYDTI*
Ga0137422_10838622	3300011416	Soil	MEPGKIHLLNAGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLF
Ga0137314_10207031	3300011420	Soil	VTDGAGKIHLLNAGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI*
Ga0137436_10002493	3300011423	Soil	MEPGKIHLLNAGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI*
Ga0137437_10343212	3300011442	Soil	MEPGKIHLLNAGDGSDNGITQTIAVSIYNRLYRVTNNGSDGNGAPGLMRIRISRSVLWFTTNSVFDLEPRRSVDVYGYSLTVVALTSLQLFGSYDTI*
Ga0137437_10492162	3300011442	Soil	MEPGKIRLINSGTTGGEAGFTQTIAYAINNRLYRVTNDGPGNGGAGLMRIRVARSVLWFTINSVVDLQSGRSVDVYGSTITVLALD
Ga0137437_11015942	3300011442	Soil	MEPGKIHLLNAGRGNDDGITQTIALAINNRLYRVTNNGSDGDGAPGLMRIRITRSVLWWNINSVFDLEARRSVDVYGHTLTVVALTSLQLFGSYDTI*
Ga0137463_10253513	3300011444	Soil	MEPGKIHLLNAGDGSDNGITQTIAVSIYNRLYRVTNNGSDGNGAPGLMRIRISRSVLWFTINSVFDLEPRRSVDVYGYSLTVVALTSLQLFGSYDTI*
Ga0137463_11625272	3300011444	Soil	LLNAGRGNDDGITQTIALAINNRLYRVTNNGSDGNGAPGLMRIRISRTILWFTINSVFDLEPGRSVDVYGSTLSVVALTSLQLFGSYDTI*
Ga0137399_110692821	3300012203	Vadose Zone Soil	MEPGKIRLINTGESGGEAGFTQTIALSINNRLYRVTNDGPGNGGPGLMRIRISRSVLWWTINSVFDLESGRSVDVYGSSLTVVALTTLQLFGTYDTI*
Ga0150985_1079438232	3300012212	Avena Fatua Rhizosphere	GQRHGTGKIRLINSGGQSDAGFTQTIAVSAGNRLCRVTNNGGANGGPGTMRIRITRTVFGFSVNSVFDLTAGRSVDVIGSTLSVIALDTLQLFGSYDTI*
Ga0150984_1221581551	3300012469	Avena Fatua Rhizosphere	IERGEGHGTGKIRLINTGGQSDAGFTQTIAVSAGNRLCRVTNNGGANGGPGTMRIRITRTVFGFSVNSVFDLTAGRSVDVIGSTLSVIALDTLQLFGSYDTI*
Ga0157344_10032812	3300012476	Arabidopsis Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQMFGTYDACC*
Ga0157313_10505921	3300012503	Arabidopsis Rhizosphere	TMEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0137397_105138852	3300012685	Vadose Zone Soil	MEPGKIHLLNAGRGNDDGITQTIALAIYNRLYRVTNNGSDGDGAPGLMRIRISRSVWWWTINSVFDLEAGRSVDVYGHTLTVVALTSLQLFGSYDTI*
Ga0137404_102952842	3300012929	Vadose Zone Soil	MEPGKIHLLNAGRGNDEGITQTIALAINNRLYRVTNNGSDGNGAPGLMRIRIARSFFWFTINSVFDLEPRRSVDVYGHTLSVVALTSLQLFGSYDTI*
Ga0137410_100075395	3300012944	Vadose Zone Soil	MEPGKIRLINSGGQDPSGFTQTIALAIYNRLYRITNDGPGNGQPGAMRIRISRTFFWFTIHSVFDLPAGRSVDVYGATIEVAALETLQLFGSYDTI*
Ga0137410_100077535	3300012944	Vadose Zone Soil	MEPGKIHLLNAGDGTDNGISQTIAVSIYNRLYRVTNNGSDGNGAPGLMRIRISRSVLWFTINSIFDLEPRRSVDLYGNSITVVALTSLQLFGSYDTI*
Ga0137410_109202761	3300012944	Vadose Zone Soil	MEPGKIHLLNAGQENNDGITQTIAVSIYNRPYRVTNNGSDGNGAPGLMRIRISRSFLWFTINSVFDLEPRRSVDVYGNSITVVALTSLQLFGSYDTI*
Ga0164301_103881422	3300012960	Soil	MEPGKIRLINTGGQDTAGFTQQIAVNVGNRLYRITNDGPGNGQPGNMGIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0164301_103953102	3300012960	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI*
Ga0164302_106992863	3300012961	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI*
Ga0126369_118798761	3300012971	Tropical Forest Soil	INSGGQDPSGFTQTIAIAIYNRLYRVTNDGPGNGQPGAMRIRIARTFFWFTINSVFDLPAGRSVDVYGATIEVAALETLQLFGSYDTI*
Ga0164309_107266242	3300012984	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNTGTANGGPGTMRIRIVRTVLWFTINSVFDLDAGRSVDVFGSTMSVIALDTLQLFGSYDTI*
Ga0164304_116052632	3300012986	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNTGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI*
Ga0164306_105467541	3300012988	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDVTAGRSVDVIRSTLSVI
Ga0164305_101452991	3300012989	Soil	TQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI*
Ga0164305_117677201	3300012989	Soil	MEPGKIRLINTGGQDTAGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLE
Ga0157378_107611961	3300013297	Miscanthus Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSV
Ga0180061_10671891	3300014861	Soil	AGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI*
Ga0157376_102854841	3300014969	Miscanthus Rhizosphere	IAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN*
Ga0157376_119346532	3300014969	Miscanthus Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNEAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0137409_100223806	3300015245	Vadose Zone Soil	MEPGKIRLINSGGQDPSGFTQTIALAINNRLYRITNDGPGNGQPGAMRIRISRTFFWFTINSVFDLPAGRSVDVYGATIEVAALETLQLFGSYDTI*
Ga0132258_113288615	3300015371	Arabidopsis Rhizosphere	GKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVLWFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGSYDTI*
Ga0132258_135504624	3300015371	Arabidopsis Rhizosphere	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI*
Ga0132256_1024737011	3300015372	Arabidopsis Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLF
Ga0132255_1000900091	3300015374	Arabidopsis Rhizosphere	RLKGETMEPGKIRLINRGEGGTEADFTQTIAVSVGNRVYRLTNNGAANGASATMTIRITRTVLFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC*
Ga0187821_101252911	3300017936	Freshwater Sediment	VEPGKIRLINTGGQDQSGFTQTIASAVGNRVYRVTNDGPGDGGPGLMRIRIARSFFGMTINSVFDLEAGRSVDVLGSTLTVVALTTLQLFGTYDTI
Ga0184628_100114517	3300018083	Groundwater Sediment	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRVYRVTNTGARTVLWFTINSVFDLDAGRSVDVFGSTLSVIALDTLQLFGTYDTI
Ga0180115_11398121	3300019257	Groundwater Sediment	QTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI
Ga0179594_100021292	3300020170	Vadose Zone Soil	MEPGKIHLLNAGRGNDEGITQTIALAINNRLYRVTNNGSDGNGAPGLMRIRIARSFFWFTINSVFDLEPRRSVDVYGHTLSVVALTSLQLFGSYDTI
Ga0247688_10208112	3300024186	Soil	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTI
Ga0247665_10044045	3300024219	Soil	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLS
Ga0247673_10165642	3300024224	Soil	MEHGLIRLINSGGTSDAGFTQTLAVSVGNRLYRVTNNGGVDGAPGTMRIRIARTVLWFTINSVFDLTAGRSVDVFGSTLSVVALDSLQLFGTYDAI
Ga0247671_10023911	3300024284	Soil	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI
Ga0208077_10578682	3300025427	Arctic Peat Soil	TGSQNEAGFTQLISLLPTNRLYRVTNDGSGDGAVAAMRIRISRKFLWWTVVSVFDLASGRSVDVYGASITVLALESLQLFGSYDTI
Ga0208076_10232821	3300025464	Arctic Peat Soil	MEPGKIRLINSGGEQPDIAQTISYAITNRLYRVTNDGPGNGGPGLMRIAVSRSVLWWTINSTVDLESGRSVDVYGSSLTVTALTSLQLF
Ga0208715_10222232	3300025482	Arctic Peat Soil	MEPGKIRLINSGGEQPDIAQTISYAITNRLYRVTNDGPGNGGPGLMRIAVSRSVLWWTINSTVDLESGRSVDVYGSSLTVTALTSLQLFGSYDTI
Ga0207707_103198621	3300025912	Corn Rhizosphere	GITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI
Ga0207662_101065953	3300025918	Switchgrass Rhizosphere	MEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN
Ga0207644_116028371	3300025931	Switchgrass Rhizosphere	MEHGLIRLINSGGTSDAGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVF
Ga0207711_106391852	3300025941	Switchgrass Rhizosphere	MEPGKIRLINTGGQDTAGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN
Ga0207711_111192751	3300025941	Switchgrass Rhizosphere	MMEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRS
Ga0207661_101765184	3300025944	Corn Rhizosphere	MMEPGKIRLINSGGQDTSGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN
Ga0207667_118993102	3300025949	Corn Rhizosphere	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVV
Ga0207651_104234474	3300025960	Switchgrass Rhizosphere	AGFTQTIAVSVGNRLYRVTNNGSANGGPGTMRIRIARTVLGFTINSVFDLTAGRSVDVFGSTLSVVALDTLQLFGTYDTIWSTRR
Ga0207702_114235902	3300026078	Corn Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDACC
Ga0207641_101538644	3300026088	Switchgrass Rhizosphere	MEPGKIRLINRGEGGSEADFTQTIAASVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITV
Ga0207683_115960612	3300026121	Miscanthus Rhizosphere	IRLINTGGQDTAGFTQQIAVNVGNRLYRITNDGPGNGQPGNMRIWITRQFGFFSTTSIFELPAGRSVDVYGSSIKVQALETLELFGTYDAN
Ga0207698_101849441	3300026142	Corn Rhizosphere	KGMEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNDGSANGGPGTMRIRIARTVFGFTLNSVFDLTAGRSIDVVGSTLSVVALDTLQLFGSYDTI
Ga0209890_102043611	3300026291	Soil	MEPGKIRLINTGNQDEAGFTQTISLSPVNRLYRITNDGPGDASPGAMRIRISRTVFWRTVVSVFDLTSGRSVDVYGASITVLALETLQLFGTYDTI
Ga0209811_1000426810	3300027821	Surface Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI
Ga0209811_100194775	3300027821	Surface Soil	RLINSGGQSDAGFTQTIAVSVGNRLYRVTNTGTANGGPGTMRIRIARTVLWFTINSVFDLDAGRSVDVFGSTLSVIALDTLQLFGSYDTI
Ga0268264_119817792	3300028381	Switchgrass Rhizosphere	MEPGKIRLINRGEGGTEANFTQTIAVSVGNRVYRLTNNGAANGAPATMTIRITRTVFFFTVRSTVELTAGRSVDVFGSSITVTVLDALQLFGTYDA
Ga0307504_100300022	3300028792	Soil	MEHGLIRLINSGGTSTEGFTQTIAVSVGNRLYRVTNNGSVNGGPGTMRIHIARTVLWFTINSVFDLTAGRSVDVFGSTLSVLALDTLQLFGSYDTI
Ga0307501_100599342	3300031152	Soil	MEPGKIRLINTGGTSQAGFTQTISVSIYNRLYRITNDGAGDGAPGLMRIRIARSVLWITINSTFDLEAGRSVDVYGNSITVVALTTLQLFGTYDTI
Ga0308175_1024886111	3300031938	Soil	MQPGKIRLINSGRQGSPGFSQNIALAITNRLYRVTNDGAGDGAPGTMRIRTTRSLLWWTVDSVFDLESGRSVDVYGSSLTVTALDTLQLFGSYDTI
Ga0310885_104144641	3300031943	Soil	MEPGKIRLINSGGQSDAGITQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFGSYDTI
Ga0307472_1018369601	3300032205	Hardwood Forest Soil	GGQSENAFSQTIALAINNRLYRITNNGSINGGPGVMTISISRSFFFFTIKSEFDLDVGRSVDVYGSTIKVLALTSLQLLGTYDTI
Ga0247829_117773881	3300033550	Soil	MEPGKIRLINSGGQSDAGFTQTIAVSVGNRLYRVTNNGTANGGPGTMRIRIARTVFWFTISSVFDLTAGRSVDVIGSTLSVIALDTLELFG
Ga0364929_0000634_1883_2176	3300034149	Sediment	MEPGKIHLLNAGRGNDEGITQTIALAINNRLYRITNNGADGNGAPGLMRIRIARSFLWFTINSVFDLEPGRSVDVYGHTLSVVALTSLQLFGSYDTI
Ga0364933_173388_75_371	3300034150	Sediment	MEPGKIRLINTGTGGQGEAGFTQTIALAINNRLYRVTNDGSGDGAPGLMRIRITRSVLWWNINSVFDLEFGRSVDVYGHTLTVVALTTLQLFGTYDTI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076048

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences