Metagenome / Metatranscriptome Family F076045

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076045
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	45 residues
Representative Sequence	KEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Number of Associated Samples	99
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.61 %
% of genes from short scaffolds (< 2000 bps)	93.22 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.305 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.186 % of family members)
Environment Ontology (ENVO)	Unclassified (26.271 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.373 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.05% β-sheet: 16.22% Coil/Unstructured: 79.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF01380	SIS	15.25
PF06707	DUF1194	5.08
PF03401	TctC	2.54
PF13406	SLT_2	2.54
PF01977	UbiD	1.69
PF01471	PG_binding_1	1.69
PF13358	DDE_3	1.69
PF13467	RHH_4	0.85
PF00106	adh_short	0.85
PF01557	FAA_hydrolase	0.85
PF01614	IclR	0.85
PF01869	BcrAD_BadFG	0.85
PF01717	Meth_synt_2	0.85
PF02423	OCD_Mu_crystall	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.54
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	1.69
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.85
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.85
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.17 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.41 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	10.17 %
Unclassified	root	N/A	1.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.86 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	10.17 %
Unclassified	root	N/A	1.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	10.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.39 %
Unclassified	root	N/A	1.69 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	10.17 %
Unclassified	root	N/A	1.69 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_120805655	Not Available	718	Open in IMG/M
3300001545\|JGI12630J15595_10023725	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300004114\|Ga0062593_100730063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300005332\|Ga0066388_102108839	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300005332\|Ga0066388_104481661	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300005332\|Ga0066388_105800832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300005339\|Ga0070660_100527574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300005435\|Ga0070714_100915138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	852	Open in IMG/M
3300005436\|Ga0070713_101357080	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300005455\|Ga0070663_100829166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795	Open in IMG/M
3300005564\|Ga0070664_100950037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	807	Open in IMG/M
3300005616\|Ga0068852_100045433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3735	Open in IMG/M
3300005713\|Ga0066905_100741852	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300005764\|Ga0066903_106653508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300005764\|Ga0066903_107897352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300005843\|Ga0068860_102558101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300005844\|Ga0068862_100737106	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300006038\|Ga0075365_10021388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4035	Open in IMG/M
3300006038\|Ga0075365_10305546	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300006038\|Ga0075365_10344414	All Organisms → cellular organisms → Bacteria → Proteobacteria	1050	Open in IMG/M
3300006038\|Ga0075365_10385595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	989	Open in IMG/M
3300006042\|Ga0075368_10346168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300006046\|Ga0066652_100206515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1693	Open in IMG/M
3300006058\|Ga0075432_10353671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300006606\|Ga0074062_12855245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300006606\|Ga0074062_12909445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300006847\|Ga0075431_101561754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300009101\|Ga0105247_10211458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1308	Open in IMG/M
3300009174\|Ga0105241_10265282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1461	Open in IMG/M
3300009174\|Ga0105241_12561632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300009177\|Ga0105248_11102050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300010047\|Ga0126382_11992611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300010048\|Ga0126373_10927484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300010147\|Ga0126319_1018306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300010147\|Ga0126319_1263731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	928	Open in IMG/M
3300010358\|Ga0126370_11532533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300010359\|Ga0126376_10071391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2542	Open in IMG/M
3300010362\|Ga0126377_11553204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	736	Open in IMG/M
3300010366\|Ga0126379_10339797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1527	Open in IMG/M
3300010376\|Ga0126381_102159291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	801	Open in IMG/M
3300010376\|Ga0126381_102318421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	771	Open in IMG/M
3300010398\|Ga0126383_11750596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	710	Open in IMG/M
3300010398\|Ga0126383_12393522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300010399\|Ga0134127_12996046	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300011119\|Ga0105246_12575689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300012361\|Ga0137360_11400919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300012469\|Ga0150984_117617148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300012469\|Ga0150984_119850563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300012896\|Ga0157303_10050993	Not Available	849	Open in IMG/M
3300012948\|Ga0126375_10889200	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300012971\|Ga0126369_12451447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300014326\|Ga0157380_11447972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300014968\|Ga0157379_11057567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300016294\|Ga0182041_10310854	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300016357\|Ga0182032_11661665	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300016371\|Ga0182034_10516771	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300016404\|Ga0182037_11231834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300016445\|Ga0182038_11478983	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300018027\|Ga0184605_10420629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300018469\|Ga0190270_11490291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300018469\|Ga0190270_13188020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300021073\|Ga0210378_10410481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300021560\|Ga0126371_13461863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300021560\|Ga0126371_13659403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300024055\|Ga0247794_10302152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300025928\|Ga0207700_11955296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300025932\|Ga0207690_10338488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1187	Open in IMG/M
3300025932\|Ga0207690_11315010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300025939\|Ga0207665_10672455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300025945\|Ga0207679_10166629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1810	Open in IMG/M
3300025986\|Ga0207658_10788343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862	Open in IMG/M
3300026067\|Ga0207678_10043992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3865	Open in IMG/M
3300027383\|Ga0209213_1003206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2775	Open in IMG/M
3300027583\|Ga0209527_1096103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300027909\|Ga0209382_11582262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300028381\|Ga0268264_11503014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300028715\|Ga0307313_10276551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300028754\|Ga0307297_10208165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300028755\|Ga0307316_10274353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300028768\|Ga0307280_10113891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300028782\|Ga0307306_10055116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	997	Open in IMG/M
3300028784\|Ga0307282_10660465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300028787\|Ga0307323_10022385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2167	Open in IMG/M
3300028791\|Ga0307290_10086135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1143	Open in IMG/M
3300028803\|Ga0307281_10134429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300028872\|Ga0307314_10287630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300030574\|Ga0247648_1208571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300031058\|Ga0308189_10059520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1092	Open in IMG/M
3300031092\|Ga0308204_10255977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300031549\|Ga0318571_10191503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	727	Open in IMG/M
3300031573\|Ga0310915_10366964	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031573\|Ga0310915_10582210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	793	Open in IMG/M
3300031573\|Ga0310915_10774431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	675	Open in IMG/M
3300031668\|Ga0318542_10107327	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300031680\|Ga0318574_10238031	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300031682\|Ga0318560_10332814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	819	Open in IMG/M
3300031719\|Ga0306917_10621586	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300031747\|Ga0318502_10094942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1646	Open in IMG/M
3300031747\|Ga0318502_10366662	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300031764\|Ga0318535_10279136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	747	Open in IMG/M
3300031765\|Ga0318554_10329360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	868	Open in IMG/M
3300031768\|Ga0318509_10147904	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300031770\|Ga0318521_10571403	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300031794\|Ga0318503_10055366	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300031795\|Ga0318557_10405817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300031831\|Ga0318564_10216728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	851	Open in IMG/M
3300031894\|Ga0318522_10063256	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300031894\|Ga0318522_10277400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300031912\|Ga0306921_10453640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1493	Open in IMG/M
3300031941\|Ga0310912_10440425	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300031946\|Ga0310910_11204288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300032010\|Ga0318569_10410532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300032044\|Ga0318558_10007479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3974	Open in IMG/M
3300032064\|Ga0318510_10079726	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300032091\|Ga0318577_10433572	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300033550\|Ga0247829_11005987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300034150\|Ga0364933_128268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300034151\|Ga0364935_0012711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2174	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.42%
Host-Associated	Host-Associated	24.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.03%
Plants	Host-Associated → Plants	24.58%
Aquatic	Environmental → Aquatic	3.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.95%
Roots	Host-Associated → Plants → Roots	4.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.39%
Freshwater	Environmental → Aquatic → Freshwater	2.54%
Floodplain	Environmental → Terrestrial → Floodplain	1.69%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.32%
Loam	Environmental → Terrestrial → Soil → Loam	11.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.47%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.39%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.63%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.08%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.54%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030574	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1208056551	3300000956	Soil	RRSAGPFTRKFCPFCACEHDWYREDSKFLSPKLEPRARVQQAS*
JGI12630J15595_100237252	3300001545	Forest Soil	GSPGPFARKYCPFCACEHVWYKEDTKFLAAKSVTRPKVQQAS*
Ga0062593_1007300631	3300004114	Soil	PKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLALKAPPRLGIQQAS*
Ga0066388_1021088392	3300005332	Tropical Forest Soil	KDFVRSPGPFTRKFCPFCSCDHLWHREDSKFVAPKPAPRRGIQQAS*
Ga0066388_1044816612	3300005332	Tropical Forest Soil	MGMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS*
Ga0066388_1058008322	3300005332	Tropical Forest Soil	FMGMDADPKDFVRSPGPFTRKFCPFCACDHLWHREDSKFVAPKPAPRRGIQQAS*
Ga0070660_1005275742	3300005339	Corn Rhizosphere	EFARSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS*
Ga0070714_1009151381	3300005435	Agricultural Soil	KEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPRPMLRSHIQQAS*
Ga0070713_1013570802	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KEFAQTQGPFMRKFCPFCACEHWWHKEDSKFLASSAADGLRIQQAS*
Ga0070663_1008291662	3300005455	Corn Rhizosphere	DVDPKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLALKAPPRLGIQQAS*
Ga0070664_1009500372	3300005564	Corn Rhizosphere	KRKFCPFCACDHLWHKEDSKFLAPKVAPGPRIQQAS*
Ga0068852_1000454331	3300005616	Corn Rhizosphere	FKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS*
Ga0066905_1007418521	3300005713	Tropical Forest Soil	PKDFTRSRGPFTRKFCPFCACDHLWLREDSKFLAPKPVPRRGIQQAS*
Ga0066903_1066535081	3300005764	Tropical Forest Soil	RKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS*
Ga0066903_1078973522	3300005764	Tropical Forest Soil	VDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS*
Ga0068860_1025581011	3300005843	Switchgrass Rhizosphere	RKFCPFCACDHLWHKEDSKFLAPKVAPGPRIQQAS*
Ga0068862_1007371063	3300005844	Switchgrass Rhizosphere	KFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS*
Ga0075365_100213881	3300006038	Populus Endosphere	LDVDPKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS*
Ga0075365_103055461	3300006038	Populus Endosphere	FTRSTGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRLGIQQAS*
Ga0075365_103444143	3300006038	Populus Endosphere	LDVDPKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRVGIQQAS*
Ga0075365_103855951	3300006038	Populus Endosphere	PGPFTRKFCPFCACDHLWHREDSKFLAPKPAPRRGIQQAS*
Ga0075368_103461682	3300006042	Populus Endosphere	PGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRVGIQQAS*
Ga0066652_1002065151	3300006046	Soil	DVDPKEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPRPMLRSHIQQAS*
Ga0075432_103536712	3300006058	Populus Rhizosphere	EFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVAPGPRIQQAS*
Ga0074062_128552452	3300006606	Soil	KFCPFCACDHLWHKEDSKFLAPKPPSRLGIQQAS*
Ga0074062_129094451	3300006606	Soil	DPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKTAPRPRILQAS*
Ga0075431_1015617541	3300006847	Populus Rhizosphere	KFCPFCACDHLWHKEDTKFLKPKAMPRPHIQRAS*
Ga0105247_102114581	3300009101	Switchgrass Rhizosphere	TRKFCPFCACEHDWYREDSKFLSPKLEPRARVQQAS*
Ga0105241_102652821	3300009174	Corn Rhizosphere	KRKFCPFCACDHLWHKEDSKFLAPKPPSRLGIQQAS*
Ga0105241_125616321	3300009174	Corn Rhizosphere	KRKFCPFCACDHLWHREDSKFLAPKVPPRLGIQQAS*
Ga0105248_111020502	3300009177	Switchgrass Rhizosphere	PGPFKRKFCPFCACDHLWHKEDSKFLAPKSPPRLGIQQAS*
Ga0126382_119926112	3300010047	Tropical Forest Soil	DPKEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPKAALRSHIQQAS*
Ga0126373_109274842	3300010048	Tropical Forest Soil	SPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS*
Ga0126319_10183061	3300010147	Soil	RTPGPFTRKFCPFCACEHLWHKEDSKFLAPKLAVKLGVQQAS*
Ga0126319_12637313	3300010147	Soil	ADPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKGAPRLRIQQAS*
Ga0126370_115325331	3300010358	Tropical Forest Soil	KEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS*
Ga0126376_100713913	3300010359	Tropical Forest Soil	MGMDVDPKEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPKAALRSHIQQAS*
Ga0126377_115532041	3300010362	Tropical Forest Soil	MGMDVDPKEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPKAAPSHIQQAS*
Ga0126379_103397973	3300010366	Tropical Forest Soil	TRKFCPFCACDHLWHKEDSKFLAPKAALRSHIQQAS*
Ga0126381_1021592912	3300010376	Tropical Forest Soil	KFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS*
Ga0126381_1023184211	3300010376	Tropical Forest Soil	MGMDVDPKEFTRSPGPFTRKFSPFCACDHLWHREDSKFLAPKAVLRPHIQQAG*
Ga0126383_117505962	3300010398	Tropical Forest Soil	RKFCPFCACDHLWHKEDSKFLAPKAVLRPHIQQAS*
Ga0126383_123935222	3300010398	Tropical Forest Soil	PFARKFCPFCACDHLWHKEDSKFLAPKAALRPHIQQAS*
Ga0134127_129960462	3300010399	Terrestrial Soil	RSAGPFTRKFCPFCACEHDWYREDSKFLSPKLEPRARVQQAS*
Ga0105246_125756891	3300011119	Miscanthus Rhizosphere	DPKEFARSPGPFKRKFCPFCACDHLWHKEDSKFLAPKSPPRLGIQQAS*
Ga0137360_114009191	3300012361	Vadose Zone Soil	RSTGAFARKFCPFCACDHLWHKEDSKFLAPKTAAGQRIQRAS*
Ga0150984_1176171482	3300012469	Avena Fatua Rhizosphere	KFCPFCACDHLWHKEDSKFLAPKAPPRLGIQQAS*
Ga0150984_1198505631	3300012469	Avena Fatua Rhizosphere	PGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRLGIQQAS*
Ga0157303_100509931	3300012896	Soil	PFTRKFCPFCACEHDWYREDSKFLSPKLEPRARVQQAS*
Ga0126375_108892002	3300012948	Tropical Forest Soil	DPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKAVLRPHIQQAS*
Ga0126369_124514472	3300012971	Tropical Forest Soil	DVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS*
Ga0157380_114479721	3300014326	Switchgrass Rhizosphere	FKRKFCPFCACDHLWHKDDSNFLAPKAPPRIGIQQAS*
Ga0157379_110575671	3300014968	Switchgrass Rhizosphere	KFCPFCACDHLWHKEDSKFLAPKSPPRLGIQQAS*
Ga0182041_103108542	3300016294	Soil	MGTDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKAVLRPHIQQAN
Ga0182032_116616652	3300016357	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLAS
Ga0182034_105167711	3300016371	Soil	PKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLANEVVLRPHIQQAS
Ga0182037_112318341	3300016404	Soil	DPKRFTGSKGAFARTFCPFCACDHDWYKEDSKFLASKSPSHSDIQQAS
Ga0182038_114789831	3300016445	Soil	KEFTRSLGPFARKFCPFCACDHLWHKEDSKFLAPKAVLRPHIQQAS
Ga0184605_104206291	3300018027	Groundwater Sediment	GPFTRKFCPFCACEHLWHKEDSKFLAPKLAVKLGVQQAS
Ga0190270_114902911	3300018469	Soil	PFKRKFCPFCACDHLWHKEDSKFLAPKAPPRLGIQQAS
Ga0190270_131880201	3300018469	Soil	SPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0210378_104104811	3300021073	Groundwater Sediment	DVDPRDFERSRGPFARKFCPFCSCEHFWHKEDSKFLASKPVARQGFQQAS
Ga0126371_134618631	3300021560	Tropical Forest Soil	DVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS
Ga0126371_136594031	3300021560	Tropical Forest Soil	PFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS
Ga0247794_103021521	3300024055	Soil	DADPKEFRRSAGPFTRKFCPFCACEHDWYREDSKFLSPKLEPRARVQQAS
Ga0207700_119552961	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	PKEFAQTQGPFMRKFCPFCACEHWWHKEDSKFLASSAADGLRIQQAS
Ga0207690_103384881	3300025932	Corn Rhizosphere	KEFARSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0207690_113150101	3300025932	Corn Rhizosphere	GLDVDPKEFARSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0207665_106724551	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLAPKAALRPHIQQAS
Ga0207679_101666291	3300025945	Corn Rhizosphere	ADPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVAPGPRIQQAS
Ga0207658_107883431	3300025986	Switchgrass Rhizosphere	VDPKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLALKAPPRLGIQQAS
Ga0207678_100439921	3300026067	Corn Rhizosphere	GPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0209213_10032061	3300027383	Forest Soil	DPKEFTRSGGPFARKFCPFCACDHLWHKEDSKFLASKVAPRLHIQQAG
Ga0209527_10961032	3300027583	Forest Soil	MFMGMDVDPKEFTGSPGPFARKYCPFCACEHVWYKEDTKFLAAKSVT
Ga0209382_115822621	3300027909	Populus Rhizosphere	PFARKFCPFCACDHLWHKEDSKFLAPKAVLRPHIQQAS
Ga0268264_115030141	3300028381	Switchgrass Rhizosphere	EFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVAPGPRIQQAS
Ga0307313_102765511	3300028715	Soil	GPFARKFCPFCACDHLWHKEDSKFLAPKGAPRLRIQQAS
Ga0307297_102081651	3300028754	Soil	KEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKGAPRPRILQAS
Ga0307316_102743531	3300028755	Soil	PFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0307280_101138911	3300028768	Soil	EFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKGAPRLRIQQAS
Ga0307306_100551161	3300028782	Soil	GMDVDPKEFTRSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0307282_106604651	3300028784	Soil	SPGPFKRKFCPFCACDHLWHKEDSKFLAPKPPPRVGIQQAS
Ga0307323_100223851	3300028787	Soil	PFARKFCPFCACDHLWHKEDSKFLAPKTAPRPRILQAS
Ga0307290_100861351	3300028791	Soil	GMDADPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKGAPRPRILQAS
Ga0307281_101344291	3300028803	Soil	RSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0307314_102876302	3300028872	Soil	FTASPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0247648_12085711	3300030574	Soil	ADPRDFERSRGPFARKFCPFCSCEHFWHKEDSKFLAPKPVARHGFQQAS
Ga0308189_100595201	3300031058	Soil	RSPGPFARKFCPFCACDHLWHKEDSKFLAPKVAPRLRIQQAS
Ga0308204_102559772	3300031092	Soil	EFARSPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0318571_101915031	3300031549	Soil	MFMGMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLANEVVLRPHIQQAS
Ga0310915_103669642	3300031573	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAVLRPHIQQAS
Ga0310915_105822102	3300031573	Soil	MFMGMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0310915_107744311	3300031573	Soil	RKFCPFCGCDHLWHKEDSKFLAPKVVLRPNIQQAS
Ga0318542_101073271	3300031668	Soil	PGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPNIQQAS
Ga0318574_102380311	3300031680	Soil	FMGMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLASKVVLRPHIQQAS
Ga0318560_103328141	3300031682	Soil	GMDVDPKAFTRSPGPFARKFCPFCACDHLWHKEDSKFLASKVVLRPHIQQAS
Ga0306917_106215861	3300031719	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAVLRPHIQ
Ga0318502_100949423	3300031747	Soil	FMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAALRPHIQQAS
Ga0318502_103666622	3300031747	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAVL
Ga0318535_102791361	3300031764	Soil	IFMGMDVYPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0318554_103293601	3300031765	Soil	VDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLANEVVLRPHIQQAS
Ga0318509_101479042	3300031768	Soil	NEFTRSPGPFTRKFCPFCACDHLWHKEDSKFLAPKAALRSHIQQAS
Ga0318521_105714031	3300031770	Soil	PKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0318503_100553661	3300031794	Soil	EFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAALRPHIQQAS
Ga0318557_104058171	3300031795	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0318564_102167281	3300031831	Soil	MFMGMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLASKAALRPHIQQAS
Ga0318522_100632561	3300031894	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAALRPHIQQAS
Ga0318522_102774002	3300031894	Soil	VYPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0306921_104536401	3300031912	Soil	DVDPKEFTHSPGPFTRKFCPFCACDHLWHKEDSKFLAPKAAPRSHIQQAS
Ga0310912_104404251	3300031941	Soil	GMDVDPKEFTRSPGPFARKFCPFCACDHLWHKEDSKFLAPKVVLRPHIQQAS
Ga0310910_112042882	3300031946	Soil	RSLGPFARKFCPFCACDHLWHKEDSKFLAPKAALRPHIQQAS
Ga0318569_104105322	3300032010	Soil	FTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAALRPHIQQAS
Ga0318558_100074795	3300032044	Soil	FMGMDVDPKEFTRSPGPFARKFCPFCGCDHLWHKEDSKFLAPKVVLRPNIQQAS
Ga0318510_100797262	3300032064	Soil	PFTRKFCPFCACDHLWHKEDSKFLAPKAALRSHIQQAS
Ga0318577_104335721	3300032091	Soil	MFMGMDVDPKEFTRSLGPFARKFCPFCACDHLWHKEDSKFLASKAVLR
Ga0247829_110059871	3300033550	Soil	RKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0364933_128268_470_637	3300034150	Sediment	MFMGMDVDPKEFTASPGPFKRKFCPFCACDHLWHKEDSKFLAPKAPPRIGIQQAS
Ga0364935_0012711_2043_2174	3300034151	Sediment	TRTFGPFARKFCPFCACEHFWHKEDSKFLTPKTGAHSHVQQAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076045

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences