NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F076011

Metagenome / Metatranscriptome Family F076011

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076011
Family Type Metagenome / Metatranscriptome
Number of Sequences 118
Average Sequence Length 46 residues
Representative Sequence MRLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLL
Number of Associated Samples 83
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 8.47 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 84.75 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (87.288 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(27.119 % of family members)
Environment Ontology (ENVO) Unclassified
(61.017 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.76%    β-sheet: 0.00%    Coil/Unstructured: 45.24%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF13385Laminin_G_3 16.10



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A87.29 %
All OrganismsrootAll Organisms12.71 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002161|JGI24766J26685_10141829Not Available505Open in IMG/M
3300002476|metazooDRAFT_10730977Not Available503Open in IMG/M
3300005527|Ga0068876_10231521Not Available1064Open in IMG/M
3300005805|Ga0079957_1051165Not Available2531Open in IMG/M
3300006641|Ga0075471_10065784All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1990Open in IMG/M
3300006802|Ga0070749_10662130Not Available560Open in IMG/M
3300006805|Ga0075464_10433744Not Available800Open in IMG/M
3300006863|Ga0075459_1022930All Organisms → Viruses → Predicted Viral1040Open in IMG/M
3300006917|Ga0075472_10596014Not Available553Open in IMG/M
3300007234|Ga0075460_10180854Not Available724Open in IMG/M
3300007234|Ga0075460_10246238Not Available597Open in IMG/M
3300007346|Ga0070753_1060433All Organisms → cellular organisms → Bacteria1535Open in IMG/M
3300007363|Ga0075458_10040649All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300007544|Ga0102861_1172013Not Available591Open in IMG/M
3300007585|Ga0102916_1091114Not Available813Open in IMG/M
3300007658|Ga0102898_1166451Not Available520Open in IMG/M
3300008266|Ga0114363_1052435Not Available1617Open in IMG/M
3300008266|Ga0114363_1115398Not Available942Open in IMG/M
3300008266|Ga0114363_1212101Not Available583Open in IMG/M
3300008266|Ga0114363_1229059Not Available543Open in IMG/M
3300008266|Ga0114363_1236992Not Available525Open in IMG/M
3300008448|Ga0114876_1203477Not Available665Open in IMG/M
3300008450|Ga0114880_1102981Not Available1100Open in IMG/M
3300008450|Ga0114880_1232626Not Available590Open in IMG/M
3300008450|Ga0114880_1244638Not Available564Open in IMG/M
3300009159|Ga0114978_10079586Not Available2195Open in IMG/M
3300009159|Ga0114978_10162236Not Available1433Open in IMG/M
3300009164|Ga0114975_10447216Not Available700Open in IMG/M
3300009184|Ga0114976_10028208Not Available3386Open in IMG/M
3300010354|Ga0129333_10107037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Rhodonellum → Rhodonellum psychrophilum → Rhodonellum psychrophilum GCM71 = DSM 179982582Open in IMG/M
3300010354|Ga0129333_10553134Not Available1003Open in IMG/M
3300010354|Ga0129333_11134835Not Available651Open in IMG/M
3300010354|Ga0129333_11353856Not Available587Open in IMG/M
3300010354|Ga0129333_11433352Not Available567Open in IMG/M
3300010370|Ga0129336_10399116Not Available751Open in IMG/M
3300010370|Ga0129336_10578983Not Available600Open in IMG/M
3300010370|Ga0129336_10594802Not Available591Open in IMG/M
3300010370|Ga0129336_10600869Not Available587Open in IMG/M
3300010885|Ga0133913_12330158Not Available1313Open in IMG/M
3300011010|Ga0139557_1073459Not Available571Open in IMG/M
3300012013|Ga0153805_1005255All Organisms → Viruses → Predicted Viral2289Open in IMG/M
3300012719|Ga0157600_1234888Not Available1105Open in IMG/M
3300012730|Ga0157602_1127662Not Available825Open in IMG/M
3300013005|Ga0164292_10826164Not Available584Open in IMG/M
(restricted) 3300013131|Ga0172373_10761330Not Available567Open in IMG/M
3300013372|Ga0177922_10753846Not Available985Open in IMG/M
3300013372|Ga0177922_10816172All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300017707|Ga0181363_1013608Not Available1648Open in IMG/M
3300017736|Ga0181365_1044992Not Available1107Open in IMG/M
3300017774|Ga0181358_1210052Not Available632Open in IMG/M
3300017780|Ga0181346_1057072All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1571Open in IMG/M
3300017784|Ga0181348_1135790Not Available933Open in IMG/M
3300017785|Ga0181355_1148010Not Available949Open in IMG/M
3300017785|Ga0181355_1213547All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Rhodonellum → Rhodonellum psychrophilum → Rhodonellum psychrophilum GCM71 = DSM 17998753Open in IMG/M
3300017785|Ga0181355_1263095Not Available658Open in IMG/M
3300017788|Ga0169931_10387671Not Available1040Open in IMG/M
3300020190|Ga0194118_10108684Not Available1688Open in IMG/M
3300020530|Ga0208235_1007848All Organisms → Viruses → Predicted Viral1402Open in IMG/M
3300020536|Ga0207939_1045967Not Available538Open in IMG/M
3300020547|Ga0208361_1005142Not Available2133Open in IMG/M
3300020570|Ga0208465_1009675Not Available1366Open in IMG/M
3300020578|Ga0194129_10611752Not Available508Open in IMG/M
3300020603|Ga0194126_10601009Not Available658Open in IMG/M
3300021963|Ga0222712_10308137Not Available990Open in IMG/M
3300022179|Ga0181353_1068448Not Available910Open in IMG/M
3300022407|Ga0181351_1134108Not Available912Open in IMG/M
3300022407|Ga0181351_1142767Not Available871Open in IMG/M
3300022752|Ga0214917_10082285Not Available1960Open in IMG/M
3300022752|Ga0214917_10369897Not Available605Open in IMG/M
3300025283|Ga0208048_1075289Not Available750Open in IMG/M
3300025635|Ga0208147_1109762Not Available664Open in IMG/M
3300025635|Ga0208147_1137236Not Available576Open in IMG/M
3300025732|Ga0208784_1009984All Organisms → Viruses → Predicted Viral3240Open in IMG/M
3300025848|Ga0208005_1072790Not Available1070Open in IMG/M
3300027659|Ga0208975_1030992Not Available1709Open in IMG/M
3300027659|Ga0208975_1122866Not Available740Open in IMG/M
(restricted) 3300027728|Ga0247836_1102466All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1372Open in IMG/M
(restricted) 3300027728|Ga0247836_1153269Not Available992Open in IMG/M
3300027736|Ga0209190_1116582Not Available1206Open in IMG/M
3300027743|Ga0209593_10173854Not Available766Open in IMG/M
3300027760|Ga0209598_10050348Not Available2150Open in IMG/M
3300027764|Ga0209134_10198735Not Available690Open in IMG/M
3300027805|Ga0209229_10138057Not Available1099Open in IMG/M
3300027805|Ga0209229_10376185Not Available619Open in IMG/M
3300027899|Ga0209668_11222918Not Available505Open in IMG/M
3300027971|Ga0209401_1126462Not Available1023Open in IMG/M
(restricted) 3300028581|Ga0247840_10069450Not Available2537Open in IMG/M
3300031758|Ga0315907_10445021Not Available1036Open in IMG/M
3300031857|Ga0315909_10038089Not Available4579Open in IMG/M
3300031857|Ga0315909_10110942Not Available2340Open in IMG/M
3300031857|Ga0315909_10514914Not Available822Open in IMG/M
3300031857|Ga0315909_11014354Not Available500Open in IMG/M
3300031951|Ga0315904_11332501Not Available540Open in IMG/M
3300032093|Ga0315902_10503468Not Available1053Open in IMG/M
3300032116|Ga0315903_10548699Not Available900Open in IMG/M
3300033997|Ga0310131_056059Not Available873Open in IMG/M
3300034012|Ga0334986_0093433All Organisms → Viruses → Predicted Viral1814Open in IMG/M
3300034012|Ga0334986_0148233All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1356Open in IMG/M
3300034062|Ga0334995_0348493Not Available949Open in IMG/M
3300034062|Ga0334995_0711901Not Available563Open in IMG/M
3300034092|Ga0335010_0025886Not Available4518Open in IMG/M
3300034101|Ga0335027_0081377Not Available2517Open in IMG/M
3300034101|Ga0335027_0289167Not Available1113Open in IMG/M
3300034101|Ga0335027_0467119Not Available800Open in IMG/M
3300034102|Ga0335029_0045656Not Available3235Open in IMG/M
3300034104|Ga0335031_0062258Not Available2673Open in IMG/M
3300034104|Ga0335031_0126136Not Available1787Open in IMG/M
3300034106|Ga0335036_0036254Not Available3847Open in IMG/M
3300034106|Ga0335036_0251502Not Available1196Open in IMG/M
3300034106|Ga0335036_0303701Not Available1059Open in IMG/M
3300034111|Ga0335063_0284962Not Available883Open in IMG/M
3300034112|Ga0335066_0109570Not Available1733Open in IMG/M
3300034118|Ga0335053_0091923Not Available2109Open in IMG/M
3300034118|Ga0335053_0451449Not Available768Open in IMG/M
3300034120|Ga0335056_0019293All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4737Open in IMG/M
3300034200|Ga0335065_0324498Not Available965Open in IMG/M
3300034280|Ga0334997_0844579Not Available548Open in IMG/M
3300034682|Ga0310128_028130Not Available1377Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater27.12%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake11.02%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.02%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient7.63%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake6.78%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater6.78%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.93%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.24%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater2.54%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment2.54%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.54%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.69%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.69%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water1.69%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.85%
LakeEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake0.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.85%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.85%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.85%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater0.85%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.85%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300002476Freshwater microbial communities from San Paulo Zoo lake, Brazil - NOV 2012EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007585Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3EnvironmentalOpen in IMG/M
3300007658Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3EnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011010Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface IceEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012719Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES123 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012730Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES126 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017707Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020536Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020547Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020570Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020578Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35mEnvironmentalOpen in IMG/M
3300020603Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150mEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300025283Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)EnvironmentalOpen in IMG/M
3300025635Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025848Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027743Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027764Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033997Fracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-solEnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M
3300034120Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M
3300034280Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048EnvironmentalOpen in IMG/M
3300034682Fracking water microbial communities from deep shales in Oklahoma, United States - MC-4-AEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24766J26685_1014182913300002161Freshwater And SedimentMGLFRRNPNKPNLMQSAIIALLRHLLTFIGGTLVAKGVIDTATLT
metazooDRAFT_1073097723300002476LakeMRIVRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGILD
Ga0068876_1023152113300005527Freshwater LakeMRLFRKRNTETPKLPFMKSAVIALLRHLLTFIGGT
Ga0079957_105116513300005805LakeMGLFRRNPDQPKLPLMQSAIIALLRHLLTFIGGTLVAKGVIDTATLTE
Ga0075471_1006578443300006641AqueousMRLFRKRNPNNPNLMQSAIIALLRHLLTFIGGTLVAKGILDATALTEIIGAIISI
Ga0070749_1066213013300006802AqueousMGIFRRRNNPDQPKLPFMQSAVIALLRHLLTFIGGTLVAKGLLDATA
Ga0075464_1043374413300006805AqueousMGLFKRNPNKPNLMQSAIIALLRHLLTFIGGTLVAKGLLDATALQE
Ga0075459_102293033300006863AqueousMRLFRKRNPEQPKLPLMQSAIIALLRHLLTFIGGTLVAKGLLDA
Ga0075472_1059601433300006917AqueousMRLFRKRNPEQPKLPLMQSAIIALLRHLLTFIGGTLVA
Ga0075460_1018085433300007234AqueousMRLFRKRNPENTPKLPIMKAAVIALLRHLLTFIGGTLVAKGIIDAA
Ga0075460_1024623813300007234AqueousMRLFRKRNPDKPNLMQSAIIALLRHLLTFIGGTLVAKGLLDAT
Ga0070753_106043333300007346AqueousMRIFRRRNNPNNPNLMQSAIIALLRHLLTFIGGTLVAKGILDATALTE
Ga0075458_1004064933300007363AqueousMRLFRKRNPNNPNLMQSAIIALLRHLLTFIGGTLVAKGILDATALTEIIGAI
Ga0102861_117201333300007544EstuarineMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKG
Ga0102916_109111413300007585EstuarineMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIG
Ga0102898_116645113300007658EstuarineMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGT
Ga0114363_105243513300008266Freshwater, PlanktonMRLFRRRQDNPDQPKLPLMKSAVIALLRHLLTFIGGTL
Ga0114363_111539833300008266Freshwater, PlanktonMKIFRKRNPETPKLPIMKSAVIALLRHLLTFIGGT
Ga0114363_121210113300008266Freshwater, PlanktonMRLFRKRNNETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGILDTATLTEIIGS
Ga0114363_122905913300008266Freshwater, PlanktonMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDTATLTEIIGS
Ga0114363_123699213300008266Freshwater, PlanktonMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGAL
Ga0114876_120347713300008448Freshwater LakeMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAK
Ga0114880_110298113300008450Freshwater LakeMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA
Ga0114880_123262623300008450Freshwater LakeMKLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGAL
Ga0114880_124463833300008450Freshwater LakeMKLFRKRNPETPETHKLPLMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA
Ga0114978_1007958653300009159Freshwater LakeMRLFRKRNPETTKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGAL
Ga0114978_1016223633300009159Freshwater LakeMKLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEII
Ga0114975_1044721633300009164Freshwater LakeMRIFRKRNTETPKLSLMKSAVIALLRHLLTFIGGTLVAKGLLDTE
Ga0114976_1002820873300009184Freshwater LakeMKLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVA
Ga0129333_1010703713300010354Freshwater To Marine Saline GradientMKLFRKRNPETPETPKLPIMKAATLALLRHLLTFIGGA
Ga0129333_1055313433300010354Freshwater To Marine Saline GradientMKLFRKRNPENTPKLPIMKAATLALLRHLLTFIGGALVAKGFIDTESLQEIIGAIIS
Ga0129333_1113483513300010354Freshwater To Marine Saline GradientMKLFRKRNPETPETPKLPIMKAATLALLRHLLTFIGGALVA
Ga0129333_1135385613300010354Freshwater To Marine Saline GradientMGIFRRRNNPDQPKLPFMQSAVIALLRHLLTFIGGTLVAKGILDATALTEIIGAIISILSVT
Ga0129333_1143335213300010354Freshwater To Marine Saline GradientMKLFRKRNPETPETPETPKLPIMKAATLALLRHLLTFIGGALVAKGF
Ga0129336_1039911633300010370Freshwater To Marine Saline GradientMRLFRKRNPETPETPKLPLMKSAVIALLRHLLTFIGGTLVAKGIIDTATLT
Ga0129336_1057898333300010370Freshwater To Marine Saline GradientMGIFRRRNNPDQPKLPFMQSAVIALLRHLLTFIGGTLVAKGILDATALTEIIGAI
Ga0129336_1059480223300010370Freshwater To Marine Saline GradientMRIFRKRNPENTPKLPIMKAAVIALLRHLLTFIGGTLVAK
Ga0129336_1060086933300010370Freshwater To Marine Saline GradientMRIFRKRNPEQPKLPLMQSAVIALLRHLLTFIGGTLVAKGILDSAALTEII
Ga0133913_1233015833300010885Freshwater LakeMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGAL
Ga0139557_107345933300011010FreshwaterMRLFRKRNNETPETPKLPFMKSAVIALLRHLLTFIGGTLVA
Ga0153805_100525553300012013Surface IceMRLFRKRNPNDPNIMQSAVIALLRHLLTFIGGTLVAKGILDATALTE
Ga0157600_123488813300012719FreshwaterMRLFRKRNTETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDA
Ga0157602_112766213300012730FreshwaterMRLFRKRNPGTPKLPFMKSAVIALLRHLLTFIGGTLV
Ga0164292_1082616413300013005FreshwaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQ
(restricted) Ga0172373_1076133033300013131FreshwaterMRLFRKRNPEQPKLPLMQSAVIALLSHILTFIGGTLVAKGILDSAAMTEIIGAII
Ga0177922_1075384613300013372FreshwaterMKLFRKRNPETPETPKLPIMKAATLALLRHLLTFIGGALVAKGFIDTESLQEI
Ga0177922_1081617233300013372FreshwaterMRIFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLD
Ga0181363_101360833300017707Freshwater LakeMKLFRKRNPETPKIPFMKSAVIALLRHLLTFIGGTLVAKGLL
Ga0181365_104499223300017736Freshwater LakeMRLFRKRNPETPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGIIDSA
Ga0181358_121005233300017774Freshwater LakeMKLFRKRNTETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA
Ga0181346_105707213300017780Freshwater LakeMRLFRKRNPETPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGI
Ga0181348_113579033300017784Freshwater LakeMRIFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLV
Ga0181355_114801033300017785Freshwater LakeMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTL
Ga0181355_121354713300017785Freshwater LakeMRLFRKRNPETPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGIIDSATL
Ga0181355_126309513300017785Freshwater LakeMGLFNRRNANPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGILDTATLTEIIG
Ga0169931_1038767133300017788FreshwaterMGLFRKRNPDQPKLPLMQSAVIALLRHILTFIGGTLVAKGILDSAAMTE
Ga0194118_1010868433300020190Freshwater LakeMGLFRKRNPDQPNLPIMQSAVIALLRHLLTFIGGTLVAKGILDSAALTEIIGAIISIL
Ga0208235_100784833300020530FreshwaterMGLFKRNPDQPKLPLMKSAVIALLRHLLTFIGGTLV
Ga0207939_104596713300020536FreshwaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATLTEIIG
Ga0208361_100514253300020547FreshwaterMRLFRKRNPETPKLPLMKSAVIALLRHLLTFIGGTLVA
Ga0208465_100967533300020570FreshwaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDTATLTEIIGS
Ga0194129_1061175233300020578Freshwater LakeMGLFRKRNPEQPKLPLMQSAVIALLRHLLTFIGGTLVAKGILDS
Ga0194126_1060100933300020603Freshwater LakeMRLFRKRQANPEQPKLTIMQSAVIALLRHLLTFIGGTLVAKGILDSAALTEVIGAILS
Ga0222712_1030813713300021963Estuarine WaterMGLFRRKANPEQPKLPLMQSAIIALLRHLLTFIGGTLVAKGL
Ga0181353_106844833300022179Freshwater LakeMRIFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIG
Ga0181351_113410833300022407Freshwater LakeMKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGT
Ga0181351_114276733300022407Freshwater LakeMKLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA
Ga0214917_1008228513300022752FreshwaterMKLFRKRNPENTPKLPIMKAATLALLRHLLTFIGGALVAKGFIDTESLQEIIGAIISIL
Ga0214917_1036989713300022752FreshwaterMKLFRKRNPENTPKLPIMKAATLALLRHLLTFIGGALVA
Ga0208048_107528933300025283FreshwaterMRIFRRRNNPNNPTIMQSAIIALLRHLLTFIGGTLVAKG
Ga0208147_110976213300025635AqueousMRLFRKRNPEQPKLPLMQSAIIALLRHLLTFIGGTLVAKGILDATALT
Ga0208147_113723613300025635AqueousMRIFRKRNPEQPKLPLMQSAIIALLRHLLTFIGGTLVAKGLLDATALTELIGAIIT
Ga0208784_100998473300025732AqueousMRLFRKRNPNNPNLMQSAIIALLRHLLTFIGGTLVAKGIL
Ga0208005_107279013300025848AqueousMRLFRKRNPETPKLPLMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQ
Ga0208975_103099233300027659Freshwater LenticMKLFRKRNTETPKLPFMKSAVIALLRHLLTFIGGT
Ga0208975_112286633300027659Freshwater LenticMGLFRRNPNKPNLMQSAIIALLRHLLTFIGGTLVAKGVIDTATLTEIIGA
(restricted) Ga0247836_110246633300027728FreshwaterMRIFRKRNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGILDTATLTE
(restricted) Ga0247836_115326913300027728FreshwaterMGLFNRRNANPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGILDTATLTE
Ga0209190_111658233300027736Freshwater LakeMKLFRKRNPETPKLPLMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQE
Ga0209593_1017385413300027743Freshwater SedimentMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATLTEII
Ga0209598_1005034853300027760Freshwater LakeMKLFRKRNPETPKLPLMKSAVIALLRHLLTFIGGT
Ga0209134_1019873533300027764Freshwater LakeMKLFRKRNPETPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEI
Ga0209229_1013805733300027805Freshwater And SedimentMRLFRRNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGIID
Ga0209229_1037618513300027805Freshwater And SedimentMGLFRRNPNKPNLMQSAIIALLRHLLTFIGGTLVAKGVIDTATLTEIIGAI
Ga0209668_1122291833300027899Freshwater Lake SedimentMRLFRRNANPDQPKLPLMKSAVIALLRHLLTFIGGTL
Ga0209401_112646233300027971Freshwater LakeMKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQ
(restricted) Ga0247840_1006945013300028581FreshwaterMGLFNRRNANPDQPKLPLMKSAVIALLRHLLTFIGGTLVAK
Ga0315907_1044502113300031758FreshwaterMKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGL
Ga0315909_1003808973300031857FreshwaterMKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLV
Ga0315909_1011094213300031857FreshwaterMGLFNRRNANPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGILDT
Ga0315909_1051491433300031857FreshwaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLV
Ga0315909_1101435413300031857FreshwaterMGLFRRKANPEQPKLPLMQSAIIALLRHLLTFIGGTLVAKGLLDATALQEIIGALI
Ga0315904_1133250133300031951FreshwaterMGLFKRNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGILDTATLTEIIG
Ga0315902_1050346813300032093FreshwaterMRLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVA
Ga0315903_1054869913300032116FreshwaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGLLDTETL
Ga0310131_056059_1_1503300033997Fracking WaterMRLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATLTEI
Ga0334986_0093433_3_1073300034012FreshwaterMGLFKRNPDQPKLPLMKSAVIALLRHLLTFIGGTL
Ga0334986_0148233_1234_13563300034012FreshwaterMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVA
Ga0334995_0348493_832_9483300034062FreshwaterMRIFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTL
Ga0334995_0711901_2_1093300034062FreshwaterMGLFKRNPNKPNLMQSAIIALLRHLLTFIGGTLVAK
Ga0335010_0025886_4359_45173300034092FreshwaterMKLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTETLQEIIGA
Ga0335027_0081377_2411_25153300034101FreshwaterMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFI
Ga0335027_0289167_979_11133300034101FreshwaterMRIFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIL
Ga0335027_0467119_655_7983300034101FreshwaterMRLFRRNANPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATL
Ga0335029_0045656_1_1623300034102FreshwaterMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATLTEII
Ga0335031_0062258_2529_26723300034104FreshwaterMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAA
Ga0335031_0126136_1630_17853300034104FreshwaterMRLFRKRNNETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDTATLTE
Ga0335036_0036254_3697_38463300034106FreshwaterMRIFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATL
Ga0335036_0251502_2_1513300034106FreshwaterMRLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATL
Ga0335036_0303701_1_1263300034106FreshwaterMRLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLL
Ga0335063_0284962_3_1073300034111FreshwaterMRLFRKRNPEQPKLPLMQSAIIALLRHLLTFIGGT
Ga0335066_0109570_1575_17333300034112FreshwaterMKLFRKRNPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDAATLTEIIGS
Ga0335053_0091923_1995_21083300034118FreshwaterMGLFRRNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAK
Ga0335053_0451449_3_1163300034118FreshwaterMGLFKRNPNKPNLMQSAIIALLRHLLTFIGGTLVAKGI
Ga0335056_0019293_4598_47353300034120FreshwaterMRLFRKRNPETPKLPIMKSAVIALLRHLLTFIGGTLVAKGLLDTET
Ga0335065_0324498_1_1533300034200FreshwaterMRLFRRRQDNPDQPKLPLMKSAVIALLRHLLTFIGGTLVAKGIIDTATLTE
Ga0334997_0844579_3_1493300034280FreshwaterMKLFRKRNPETPETPKLPFMKSAVIALLRHLLTFIGGTLVAKGIIDSAT
Ga0310128_028130_3_1403300034682Fracking WaterMRIFRKRNPENTPKLPIMKAAVIALLRHLLTFIGGTLVAKGIIDAA


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