Metagenome / Metatranscriptome Family F075889

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075889
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	50 residues
Representative Sequence	ASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Number of Associated Samples	90
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	97.46 %
% of genes from short scaffolds (< 2000 bps)	77.12 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.881 % of family members)
Environment Ontology (ENVO)	Unclassified (57.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.254 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1JGI25383J37093_100291803 2JGI25384J37096_102053311 3JGI25382J37095_100934871 4JGI25382J43887_101088661 5JGI25382J43887_101473291 6Ga0066674_104818462 7Ga0066677_100244561 8Ga0066673_106900452 9Ga0066690_102656882 10Ga0066690_109863491 11Ga0066688_100506973 12Ga0066678_100040238 13Ga0066678_110142071 14Ga0070703_104076691 15Ga0070694_1000064641 16Ga0070707_1007019212 17Ga0070699_1008953122 18Ga0070695_1000140116 19Ga0066701_100032518 20Ga0066661_108136531 21Ga0066692_101323082 22Ga0066692_106864892 23Ga0066707_106686081 24Ga0066704_100357254 25Ga0066700_108095371 26Ga0066652_1001116221 27Ga0066659_104606761 28Ga0075433_110277122 29Ga0075434_1005972131 30Ga0075436_1001127733 31Ga0079219_115387971 32Ga0079219_117610172 33Ga0066710_1002904893 34Ga0066710_1022834161 35Ga0066710_1028149062 36Ga0066710_1033642382 37Ga0066710_1048786312 38Ga0099830_112024221 39Ga0099828_103462681 40Ga0075423_106109962 41Ga0127486_11337102 42Ga0134064_101740391 43Ga0134065_101255621 44Ga0134065_102820831 45Ga0134080_100579092 46Ga0134063_100053316 47Ga0134071_100367303 48Ga0134071_101792191 49Ga0134071_104139422 50Ga0134071_104423631 51Ga0134062_100908322 52Ga0134062_105896952 53Ga0134062_107733412 54Ga0134066_102592301 55Ga0134121_106686761 56Ga0137393_108133011 57Ga0137389_112222712 58Ga0137364_100895041 59Ga0137383_103115702 60Ga0137382_100810813 61Ga0137365_100294831 62Ga0137399_101956081 63Ga0137374_113002112 64Ga0137380_116931251 65Ga0137381_106567671 66Ga0137378_101841883 67Ga0137378_103442442 68Ga0137378_115952342 69Ga0137377_109352582 70Ga0137377_113006052 71Ga0137377_114228401 72Ga0137370_108250841 73Ga0137387_101206844 74Ga0137366_108818101 75Ga0137360_104449032 76Ga0134057_11908181 77Ga0134024_13042632 78Ga0134077_103067871 79Ga0134077_103375382 80Ga0134110_103279911 81Ga0134079_100036465 82Ga0137405_12909306 83Ga0137420_12936861 84Ga0134112_103322241 85Ga0134112_103426471 86Ga0066655_103243922 87Ga0066655_105159782 88Ga0066669_102996271 89Ga0209619_104278782 90Ga0209324_107400481 91Ga0209237_10328274 92Ga0209238_10151211 93Ga0209238_10727981 94Ga0209239_10021038 95Ga0209239_10223074 96Ga0209239_12824461 97Ga0209154_10192934 98Ga0209154_11083032 99Ga0209472_11074521 100Ga0209152_100080431 101Ga0209801_10329541 102Ga0209267_12851122 103Ga0209059_10062756 104Ga0209059_11822432 105Ga0209378_10118946 106Ga0209058_12748782 107Ga0209805_10194124 108Ga0209805_10497331 109Ga0209588_12081352 110Ga0209178_11251142 111Ga0209073_101444641 112Ga0209177_104530142 113Ga0209074_100433072 114Ga0209590_108313971 115Ga0307468_1002480351 116Ga0307473_100591061 117Ga0307479_107561091 118Ga0307471_1037938162
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1JGI25383J37093_100291803 2JGI25384J37096_102053311 3Ga0066673_106900452 4Ga0066690_102656882 5Ga0066678_100040238 6Ga0070707_1007019212 7Ga0066701_100032518 8Ga0066700_108095371 9Ga0075436_1001127733 10Ga0066710_1002904893 11Ga0066710_1033642382 12Ga0134071_104423631 13Ga0137374_113002112 14Ga0134057_11908181 15Ga0137405_12909306 16Ga0134112_103322241 17Ga0209619_104278782 18Ga0209154_11083032 19Ga0307479_107561091
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1Ga0209801_10329541 2Ga0066673_106900452 3Ga0066690_102656882 4Ga0070707_1007019212 5Ga0079219_117610172 6Ga0066710_1033642382 7Ga0099828_103462681 8Ga0134064_101740391 9Ga0134071_104423631 10Ga0137393_108133011 11Ga0137365_100294831 12Ga0137374_113002112 13Ga0137378_103442442 14Ga0137377_114228401 15Ga0137370_108250841 16Ga0134057_11908181 17Ga0134077_103067871 18Ga0137405_12909306 19Ga0134112_103322241 20Ga0209619_104278782 21Ga0209239_10223074 22Ga0209154_11083032 23Ga0209059_10062756 24Ga0209805_10497331 25Ga0209073_101444641 26Ga0209590_108313971
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.38% Coil/Unstructured: 76.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF16949	ABC_tran_2	68.64
PF00005	ABC_tran	5.08
PF01841	Transglut_core	4.24
PF13304	AAA_21	1.69
PF03091	CutA1	0.85
PF00361	Proton_antipo_M	0.85
PF03100	CcmE	0.85
PF01661	Macro	0.85

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.85
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	0.85
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	85.59 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	45.76 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	7.63 %
Unclassified	root	N/A	0.00 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	33.05 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	7.63 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.05 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	7.63 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.05 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.05 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	7.63 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.05 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	3.39 %
Unclassified	root	N/A	0.00 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	3.39 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.05 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	3.39 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	3.39 %
Unclassified	root	N/A	0.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10029180	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1849	Open in IMG/M
3300002561\|JGI25384J37096_10205331	All Organisms → cellular organisms → Bacteria → FCB group	578	Open in IMG/M
3300002562\|JGI25382J37095_10093487	All Organisms → cellular organisms → Bacteria → FCB group	1079	Open in IMG/M
3300002908\|JGI25382J43887_10108866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1456	Open in IMG/M
3300002908\|JGI25382J43887_10147329	All Organisms → cellular organisms → Bacteria → FCB group	1199	Open in IMG/M
3300005166\|Ga0066674_10481846	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	561	Open in IMG/M
3300005171\|Ga0066677_10024456	All Organisms → cellular organisms → Bacteria	2825	Open in IMG/M
3300005175\|Ga0066673_10690045	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	589	Open in IMG/M
3300005177\|Ga0066690_10265688	All Organisms → cellular organisms → Bacteria → FCB group	1153	Open in IMG/M
3300005177\|Ga0066690_10986349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	531	Open in IMG/M

Showing 1 to 10 of 118 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.61%
Host-Associated	Host-Associated	3.39%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	3.39%
Terrestrial	Environmental → Terrestrial	96.61%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil	96.61%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	5.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.39%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	38.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.39%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	18.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	16.10%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.03%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M

Showing 1 to 10 of 90 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_100291803	3300002560	Grasslands Soil	GGDAGGNVFAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL*
JGI25384J37096_102053311	3300002561	Grasslands Soil	LHATGASDAGANLFAGWEGRRARPFKPFLEAKLVIADNTSFNVLAGLNFPL*
JGI25382J37095_100934871	3300002562	Grasslands Soil	NVFAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL*
JGI25382J43887_101088661	3300002908	Grasslands Soil	SGGGDAGGNVFAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL*
JGI25382J43887_101473291	3300002908	Grasslands Soil	YLHASGASDAGANLFAGWEARQARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0066674_104818462	3300005166	Soil	FYFGAGFAYLHASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Ga0066677_100244561	3300005171	Soil	GGGFAYLHGSGASDAGANLFAGWEGRRARPFKPFLEGKFVFADRTSFNVEAGLNFPL*
Ga0066673_106900452	3300005175	Soil	FYLGGGFAYRHANGQGDAGANVFAGWEGRRSRPFKPFLEGKFVFADNTSFNVLAGLNFPL
Ga0066690_102656882	3300005177	Soil	LGGGLAILHASGNTDTGANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL*
Ga0066690_109863491	3300005177	Soil	FAYLHASGAGDAGANLFAGWEGRQARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0066688_100506973	3300005178	Soil	VGGGFAYLHASGASDAGANLFAGWEGRRARPFKPFLEGKFVFADHTSFNVEAGLNFPL*
Ga0066678_100040238	3300005181	Soil	AGANAFAGWEGRRARPFKPFAEAKLVFASTTSFNIEGGLNFSL*
Ga0066678_110142071	3300005181	Soil	ASDAGANLFAGWEGRVARPFKPFLEAKFVFADNTSFNVLAGLSFPL*
Ga0070703_104076691	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	AGANLFAGWEGRRARPFKPFLEARFVFADHTSFNVLGGLNFPL*
Ga0070694_1000064641	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GANVFAGWEGRRARPFKPFLEARFVFADHTSFNVLGGLNFPL*
Ga0070707_1007019212	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LAILHASGNSDTGVNGFAGWEGLRLRPFRPFIEGKLVFANNTSFNLLGGINFPL*
Ga0070699_1008953122	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SGGGDAGGNAFAGWEGRRAMPFKPFLEAKLVFRDNTSFNILGGLSFPL*
Ga0070695_1000140116	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GANLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0066701_100032518	3300005552	Soil	ANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL*
Ga0066661_108136531	3300005554	Soil	ASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0066692_101323082	3300005555	Soil	GDAGANVFAGWEGRRSRPFKPFLEGKFVFADNTSFNVLAGLNFPL*
Ga0066692_106864892	3300005555	Soil	GVNAFAGWEGRRARPFRPFAEAKLVLASNTSFNVLGGIAFPL*
Ga0066707_106686081	3300005556	Soil	GASDAGANLFAGWEGRVARPFKPFLEAKFVFADNTSFNVLAGLSFPL*
Ga0066704_100357254	3300005557	Soil	GVNAFAGWEGRRARPFRPFAEAKLVIASTTSFNLLGGITFPI*
Ga0066700_108095371	3300005559	Soil	EGHGGGNVFAGWEGRRARPFKPFLEGKFVFSYTTSFNIEGGINFPL*
Ga0066652_1001116221	3300006046	Soil	GASDAGANLFAGWEGRRARPFKPFLEAKFVFADNSSFNVEAGLNFPL*
Ga0066659_104606761	3300006797	Soil	GAGFAYLHASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0075433_110277122	3300006852	Populus Rhizosphere	YLHASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0075434_1005972131	3300006871	Populus Rhizosphere	YLHANGASDAGANVFAGWEGRRARPFKPFLEARFVFADRTSFNVLAGLNFPL*
Ga0075436_1001127733	3300006914	Populus Rhizosphere	DLFAGWEGRRARPFKPFLEGKFVFADNTSFNVEAGLNFPL*
Ga0079219_115387971	3300006954	Agricultural Soil	TGADVFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0079219_117610172	3300006954	Agricultural Soil	HSSGASDAGANVFLGWEGRHARPFKPFLEGKLVFADNTSFNVEAGLNFPL*
Ga0066710_1002904893	3300009012	Grasslands Soil	WEGRRLRPFRPFIEGKLVFASSSSFNLLGGINFPL
Ga0066710_1022834161	3300009012	Grasslands Soil	RPPTAYGLFYFGGGLAILHASGSTDTGVNAFAGWEGRRYAPVKPFLEARFVFANRTSFNVLGGLMFPL
Ga0066710_1028149062	3300009012	Grasslands Soil	FAGWEGRQARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Ga0066710_1033642382	3300009012	Grasslands Soil	GNTDTGANVFGGWEGRHYAPVKPFLEARFVFASNTSFNLLGGLNFPI
Ga0066710_1048786312	3300009012	Grasslands Soil	WEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Ga0099830_112024221	3300009088	Vadose Zone Soil	ILHASGNSNTGVNGFAGWEGRRLRPFRPFLEGKLVFANTTSFNLLGGLNFPL*
Ga0099828_103462681	3300009089	Vadose Zone Soil	GNVFAGWEGRRARPFKPFLEGKFVFATRTSFNLETGINFPL*
Ga0075423_106109962	3300009162	Populus Rhizosphere	FAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0127486_11337102	3300010128	Grasslands Soil	FCFGAGFAYLHASGASDAGVNLFAGWEGRRARPFKPFLEAKFVFADGTSFNVLAGLNFPL
Ga0134064_101740391	3300010325	Grasslands Soil	TAYGLFYFGGGLAILHASGSTDTGVNAFAGWEGRRYAPVKPFLEARFVFANRTSFNVLGGLMFPL*
Ga0134065_101255621	3300010326	Grasslands Soil	GWEGRRTRPFKPFLEGKFVFADNTSFNVLAGLNFPL*
Ga0134065_102820831	3300010326	Grasslands Soil	ANGASDAGANLFAGWEGRVARPFKPFLEAKFVFADNTSFNVLAGLSFPL*
Ga0134080_100579092	3300010333	Grasslands Soil	GFFYVGGGLAILHASGNTDTGANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL*
Ga0134063_100053316	3300010335	Grasslands Soil	GASDAGANLFAGWEGRRARPFKPFIEGKFVFADNTSFNVEAGLNFPL*
Ga0134071_100367303	3300010336	Grasslands Soil	FYLGGGLAILHASGNTDTGANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL
Ga0134071_101792191	3300010336	Grasslands Soil	HASGASDAGVNLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0134071_104139422	3300010336	Grasslands Soil	ASGASDAGANLSAGWEGRRARPIKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0134071_104423631	3300010336	Grasslands Soil	GNSDTGVNAFAGWEGRRARPFRPFAEAKLVLASSTSFNLLGGIAFPL*
Ga0134062_100908322	3300010337	Grasslands Soil	AGFAYLHASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0134062_105896952	3300010337	Grasslands Soil	GFAIVHAAGEGHGGGNVFAGWEGRRARPFKPFLEGKFVFSYTTSFNIEGGINFPL*
Ga0134062_107733412	3300010337	Grasslands Soil	FAGWEGRRARPFKPFLEAKVVFAGNTSFNVLAGLNFPL*
Ga0134066_102592301	3300010364	Grasslands Soil	ANLFAGWEGRRARPFKPFLEAKFVFADNSSFNVEAGLNFPL*
Ga0134121_106686761	3300010401	Terrestrial Soil	AYLHASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0137393_108133011	3300011271	Vadose Zone Soil	NLFAGWEGRRARPFKPFLEATLVIANNTSFNVLAGLNFPL*
Ga0137389_112222712	3300012096	Vadose Zone Soil	GASDAGANLFAGWEGRRARPFKPFLEATLVIANNTSFNVLAGLNFPL*
Ga0137364_100895041	3300012198	Vadose Zone Soil	TDTGVNAFAGWEGRRYAPVKPFLEARFVFANRTSFNVLGGLTFPL*
Ga0137383_103115702	3300012199	Vadose Zone Soil	GWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0137382_100810813	3300012200	Vadose Zone Soil	LFYFGAGFAYLHASDASDAGANLFAGWEGRRARPFKPFLEAKVVFAGNTSFNVLAGLNFPL*
Ga0137365_100294831	3300012201	Vadose Zone Soil	HSTGNSHAGANAFAGWESRRARPFKPFAEAKLVFASTTSFNIEGGLNFSF*
Ga0137399_101956081	3300012203	Vadose Zone Soil	GAGFAYLHASGASNAGANLFAGWEGRRARPFKPFLEAKLVIANNTSFNVLAGLNFPL*
Ga0137374_113002112	3300012204	Vadose Zone Soil	GGSDSGADIFAGWEGRRARPFKPFLEGKFVFADNTSFNILGGINFPL*
Ga0137380_116931251	3300012206	Vadose Zone Soil	NLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL*
Ga0137381_106567671	3300012207	Vadose Zone Soil	GEGHGGGNAFAGWEGRRARPFKPFLEAKFVFSYTTSFNVEGGINFPL*
Ga0137378_101841883	3300012210	Vadose Zone Soil	SDAGANLFAGWEGRRARPFKPFLEAKFVFADNSSFNVEAGLNFPL*
Ga0137378_103442442	3300012210	Vadose Zone Soil	GFAYVHAAGEGHGGGNVFAGWEGRRARPFKPFLEGKFVFSYTTSFNIEGGINFPL*
Ga0137378_115952342	3300012210	Vadose Zone Soil	YLHASGASDAGANLFAGWEGRQARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0137377_109352582	3300012211	Vadose Zone Soil	ANLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0137377_113006052	3300012211	Vadose Zone Soil	FAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL*
Ga0137377_114228401	3300012211	Vadose Zone Soil	FGGGLALLHASGNSDTGVNGFAGWEGRRLRPFRPFLEGKLVFASSTSFNLLGGLNFPL*
Ga0137370_108250841	3300012285	Vadose Zone Soil	LAILHASANTDTGANVFGGWEGRRYTPVKPFLEARFVFSDNTSFNILGGLNLPI*
Ga0137387_101206844	3300012349	Vadose Zone Soil	FAGWEGRRARPFKPFLEAKFVFSYTTSFNVEGGINFPL*
Ga0137366_108818101	3300012354	Vadose Zone Soil	GLFYFGGGFAYLHANGVSDAGANVFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLDFPL*
Ga0137360_104449032	3300012361	Vadose Zone Soil	LFYLGAGFAYLHANGASDAGANLFAGWEGRVARPFKPFLEAKFVFADNTSFNVLAGLSFPL*
Ga0134057_11908181	3300012396	Grasslands Soil	LFYFGGGFAFLHAAGTGRAGANGFAGWEGRRARPFKPFAEAKLVFASTTSFNIEGGLNFSL*
Ga0134024_13042632	3300012404	Grasslands Soil	VYGFFYVGGGFAYLHESGASDAGANLFAGWEGRRARPFKPFLEGKFVFADNTSFNVEAGLNFPL*
Ga0134077_103067871	3300012972	Grasslands Soil	AFAGWEGRRARPFKPFLEAKLVFRDNTSFNVLGGLSFPL*
Ga0134077_103375382	3300012972	Grasslands Soil	EGRRSRPFKPFLEAKFVFADNTTFNVLAGLNFPL*
Ga0134110_103279911	3300012975	Grasslands Soil	AGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL*
Ga0134079_100036465	3300014166	Grasslands Soil	GGGFAYLHQSGASDAGANLFAGWEGRRARPFKPFIEGKFVFADNTSFNVEAGLNFPL*
Ga0137405_12909306	3300015053	Vadose Zone Soil	VGANLFAWGGKAGARGHSKPFLEAKFVFADNKAFNVPAGLNFPL*
Ga0137420_12936861	3300015054	Vadose Zone Soil	FAGWEGRRARPFKPFLEAKLVIANNTSFNVLAGLNFPL*
Ga0134112_103322241	3300017656	Grasslands Soil	GAGLAILHTPGGNDTGANVFGGWEARRYAPVKPFLEGRFVFADNTSFNAIVGINFPL
Ga0134112_103426471	3300017656	Grasslands Soil	NGQGDAGANVFAGWEGRRSRPFKPFLEGKFVFADNTSFNVLAGLNFPL
Ga0066655_103243922	3300018431	Grasslands Soil	GWEGRRARPFKPFLEAKFVFADNSSFNVEAGLNFPL
Ga0066655_105159782	3300018431	Grasslands Soil	YLGAGFAYLHANGASDAGANLFAGWEGRVARPFKPFLEAKFVFADNTSFNVLAGLSFPL
Ga0066669_102996271	3300018482	Grasslands Soil	STGNSRAGANAFAGWEGRRARPFKPFAEAKLVFASTTSFNIEGGLNFSL
Ga0209619_104278782	3300025159	Soil	PPTLYGFFYFGGGLALLHASGNTDTGANVFAGLEGRRYLPVKPFLEARFVFSNATSFNILGGINFPI
Ga0209324_107400481	3300025174	Soil	ALLHASGNTDTGANVFAGLEGRRYLPVKPFLEARFVFSNATSFNILGGINFPI
Ga0209237_10328274	3300026297	Grasslands Soil	GWEGRRARPFRPFAEAKLVLASNTSFNVLGGIAFPL
Ga0209238_10151211	3300026301	Grasslands Soil	NAFAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSFPL
Ga0209238_10727981	3300026301	Grasslands Soil	KYHPPTAYGFFYLGGGLAILHASGNTDTGANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL
Ga0209239_10021038	3300026310	Grasslands Soil	VYGFFYVGGGFAYLHQSGASDAGANLFAGWEGRRARPFKPFIEGKFVFADNTSFNVEAGLNFPL
Ga0209239_10223074	3300026310	Grasslands Soil	GFFYFGGGFAYLHGSGASDAGANLFAGWEGRRARPFKPFLEGKFVFADRTSFNLEAGLNFPL
Ga0209239_12824461	3300026310	Grasslands Soil	GGDAGGNVFAGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL
Ga0209154_10192934	3300026317	Soil	GGGFAYLHASGASHAGANLFAGWEGRRARPFKPFLEGKFVFADRTSFNVEAGLNFPL
Ga0209154_11083032	3300026317	Soil	TALGLLYFGGGFAYFHASGGGDAGGNVFPGWEGRRAMPFKPFLEAKLVFRDNTSFNVLGGLSVPL
Ga0209472_11074521	3300026323	Soil	LGGGFAYRHANGQGDAGANVFAGWEGRRSRPFKPFLEGKFVFADNTSFNVLAGLNFPL
Ga0209152_100080431	3300026325	Soil	AGFAYLQGSGASDAGANLFAGWEGRQARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Ga0209801_10329541	3300026326	Soil	ASGASDAGANLFAGWEGRRARPFKPFLEAKFVFADNTSFNVLAGLNFPL
Ga0209267_12851122	3300026331	Soil	ASDAGANLFAGWEGRRARPFKPFLEGKFVFADHTSFNVEAGLNFPL
Ga0209059_10062756	3300026527	Soil	AGWEGRRARPFKPFIEGRFVFADNTSFNVEAGLNFPL
Ga0209059_11822432	3300026527	Soil	FAGWEGRRYAPVKPFLEARFVFANRTSFNVLGGLMFPL
Ga0209378_10118946	3300026528	Soil	GWEGRRARPFKPFAEAKLVFASTTSFNIEGGLNFSL
Ga0209058_12748782	3300026536	Soil	GGDAGGNAFAGWEGRRARPFKPFLEAKLVFRDNTSFNVLGGLSFPL
Ga0209805_10194124	3300026542	Soil	LGGGLAILHASGNTDTGANVFGGWEGRRYTPVKPFLEARFVFANRTSFNVLGGLTFPL
Ga0209805_10497331	3300026542	Soil	VFGGWEGRRYSPVKPFLEARFVFADRTSFNVLGGINFPL
Ga0209588_12081352	3300027671	Vadose Zone Soil	YFGAGFAYLHASGASNAGANLFAGWEGRRARPFKPFLEAKLVIANNTSFNVLAGLNFPL
Ga0209178_11251142	3300027725	Agricultural Soil	GFAYLHSSGFSDAGANLFAGWEGRRARPFKPFLEGKFVFADNTSFNVEAGLNFPL
Ga0209073_101444641	3300027765	Agricultural Soil	GGFAYLHANGASDAGANVFAGWEGRRSRPFKPFLEARFVFADRTSFNVLTGLNFPL
Ga0209177_104530142	3300027775	Agricultural Soil	HSSGASDAGANVFLGWEGRHARPFKPFLEGKLVFADNTSFNVEAGLNFPL
Ga0209074_100433072	3300027787	Agricultural Soil	GFAYLHSNGASDAGANVFAGWEGRRSRPFKPFLEARFVFADRTSFNVLAGLNFPL
Ga0209590_108313971	3300027882	Vadose Zone Soil	TVYGFFYFGGGLAVLHATGNTSTGANVFAGWEGRRYSPVKPFLEARFVFADRTSFNILGGLNFPI
Ga0307468_1002480351	3300031740	Hardwood Forest Soil	LFYFGGGFAYLHANGASDAGANAFAGWEGRRARPFKPFLEARFVFADHTSFNVLGGLNFP
Ga0307473_100591061	3300031820	Hardwood Forest Soil	NLFAGWEGRRARPFKPFLEAKFVFADNTAFNVLAGLNFPL
Ga0307479_107561091	3300031962	Hardwood Forest Soil	TGVNGFAGWEGRRLRPFRPFLEGKFVFANNTSFNLLGGLNFPL
Ga0307471_1037938162	3300032180	Hardwood Forest Soil	LFYFGAGFAYLHANSASDAGANVFAGWEGRRSRPFKPFLEARFVFADRTSFNVLGGLNFP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters