Metagenome Family F075826

Overview

Basic Information

• Family ID: F075826
• Family Type: Metagenome
• Number of Sequences: 118
• Average Sequence Length: 53 residues
• Representative Sequence: KEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
• Number of Associated Samples: 84
• Number of Associated Scaffolds: 118

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 3.39 %
• % of genes near scaffold ends (potentially truncated): 93.22 %
• % of genes from short scaffolds (< 2000 bps): 82.20 %
• Associated GOLD sequencing projects: 73
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (63.559 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (43.220 % of family members)
• Environment Ontology (ENVO): Unclassified (44.915 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (77.966 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 39.24%
  β-sheet: 0.00%
  Coil/Unstructured: 60.76%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF13578	Methyltransf_24	3.39
PF01408	GFO_IDH_MocA	2.54
PF01266	DAO	1.69
PF14192	DUF4314	0.85
PF01471	PG_binding_1	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.44 %
Unclassified	root	N/A	63.56 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	31.36 %
Unclassified	root	N/A	63.56 %
Viruses	superkingdom	All Organisms → Viruses	5.08 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.36 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Unclassified	root	N/A	63.56 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.24 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.02 %
Unclassified	root	N/A	63.56 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.85 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	4.24 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	8.47 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Unclassified	root	N/A	63.56 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.24 %

Level 6

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.24 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	3.39 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.85 %
Epsilonproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria	0.85 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	7.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Unclassified	root	N/A	63.56 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.85 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Campylobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales	0.85 %
Chlorobia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia	3.39 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.85 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	7.63 %
Pectobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Unclassified	root	N/A	63.56 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.85 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Arcobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Arcobacteraceae	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Chlorobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales	3.39 %
Methylophilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus	7.63 %
Pectobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Pectobacterium	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.85 %
Unclassified	root	N/A	63.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Arcobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Arcobacteraceae → Arcobacter	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Chlorobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	3.39 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	7.63 %
Pectobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Pectobacterium	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.85 %
Unclassified	root	N/A	63.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Arcobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Arcobacteraceae → Arcobacter	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Chlorobium/Pelodictyon group	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group	1.69 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	7.63 %
Pectobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Pectobacterium	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.85 %
Unclassified	root	N/A	63.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Arcobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Arcobacteraceae → Arcobacter	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	7.63 %
Pectobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Pectobacterium	0.85 %
Pelodictyon	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Pelodictyon	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.85 %
Unclassified	root	N/A	63.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %

Level 12

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.85 %
Arcobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Arcobacteraceae → Arcobacter	0.85 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.85 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.85 %
Methylophilus rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae	7.63 %
Pectobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Pectobacterium	0.85 %
Pelodictyon phaeoclathratiforme	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Pelodictyon → Pelodictyon phaeoclathratiforme	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %
Siphoviridae sp. gcode 4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. gcode 4	0.85 %
Unclassified	root	N/A	63.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.85 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300013128|Ga0172366_10371222	Not Available	875
3300002141|M3t6BS1_1559070	Not Available	592
3300003427|JGI26084J50262_1038450	All Organisms → cellular organisms → Bacteria	1233
3300003908|JGI26085J52751_1006618	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2013
3300005581|Ga0049081_10047055	Not Available	1635
3300005582|Ga0049080_10065519	Not Available	1247
3300006810|Ga0070754_10066723	Not Available	1849
3300006810|Ga0070754_10166208	All Organisms → cellular organisms → Bacteria	1046
3300006868|Ga0075481_10038849	Not Available	1843
3300006869|Ga0075477_10162331	All Organisms → cellular organisms → Bacteria	929

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.15%
Plants	Host-Associated → Plants	0.85%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	12.71%
Leaf	Host-Associated → Plants → Leaf	0.85%
Marine	Environmental → Aquatic → Marine	80.51%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	5.08%
Unclassified	Environmental → Aquatic → Unclassified	0.85%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	27.97%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	3.39%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	45.76%
Lake	Environmental → Aquatic → Freshwater → Lake	5.08%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.54%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.85%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.54%
River	Environmental → Aquatic → Freshwater → River	0.85%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.69%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.85%

Subtype

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	43.22%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	3.39%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.85%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.85%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	27.97%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.24%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	22.88%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.85%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.39%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.54%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.69%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.69%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.85%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.54%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.39%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.85%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	3.39%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.54%
Marine	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine	0.85%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.54%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.69%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	43.22%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.85%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300002141	M3t6BS1 (103f)	Environmental
3300003427	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA	Environmental
3300003908	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA	Environmental
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
M3t6BS1_15590701	3300002141	Marine	DLFDPELLNQQIAKDPAGMILKLKSIWNKEYFAEIRSNLVWPAGYEEQMGLSGDLGDVGF
JGI26084J50262_10384501	3300003427	Marine	QFILPLLTPELLNKEIQKDPAGMVMKLKQIWNDEDFKEIRSKLVWPQGYAEEADLVGDLDDVGF*
JGI26085J52751_10066181	3300003908	Marine	ARQFILPLLTPEVLNKEIQKDPAGMVMKLKQIWNDEDFKEIXSKLVWPQGYAEEADLVGDLDDVGF*
Ga0049081_100470554	3300005581	Freshwater Lentic	AEYLNKEIARDPTGMIMKLKKIWNDEDFKETRSKLVWPKGYEEEADLVGDLDDVGF*
Ga0049080_100655193	3300005582	Freshwater Lentic	MIMKIKEVWNDESFKETRSKLVWPKGFEKEADLVGDLGGIGL*
Ga0070754_100667231	3300006810	Aqueous	EIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF*
Ga0070754_101662081	3300006810	Aqueous	GMIMKLKEVWNDDGFKETRSKLVWPKGYGDSAELVGDLDDVGF*
Ga0075481_100388493	3300006868	Aqueous	IQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF*
Ga0075477_101623311	3300006869	Aqueous	KEIQKDPAGMAMKLKEVWNDENFKETRSKLVWPQGYADEAGLVGDLDDVGF*
Ga0075479_100743661	3300006870	Aqueous	DPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF*
Ga0075475_100067171	3300006874	Aqueous	DPAGMIMKLKEIWNDDNFKETRDKLVWPTGYGDSADLVGDLDDVGF*
Ga0070750_101485292	3300006916	Aqueous	KVLREGRPKAQKLILSIFSAEVLNKEIQKDPAGMIMKLKGVWNDEVFKETRAKLVWPKGYAEEADLVGDLDDVGF*
Ga0070747_12957061	3300007276	Aqueous	KEVWNDDGFKETRSKLVWPKGYGDSAELVGDLDDVGF*
Ga0070752_10781531	3300007345	Aqueous	MNLKEIWNDEGFRETRAKLVWPKDYEKEANLLGDLDDVGF*
Ga0070752_13035301	3300007345	Aqueous	IAKDPAGMIMKLKGIWNDENFKETRSKIVWPKGYEEEAYLVGDLDDVGF*
Ga0070753_10087832	3300007346	Aqueous	VLNKEIQQDPAGMIMKLKEVWNDESFRETRDQLVWPKGYEDQADLVGDLDDVGF*
Ga0099849_12175971	3300007539	Aqueous	LILTILSAEALNKEIQKDPAGMVMKLKEIWNDENFKNIRSKLVWPKGYADDADLVGGLNNIGF*
Ga0099849_12443781	3300007539	Aqueous	IQKDPVGMVMKLKEIWNDEDFKETRDKLVWPKGYGDQAKLVGDLDDVGF*
Ga0075480_102512781	3300008012	Aqueous	PEAQKLISTILSAEALNKEIKKDPAGMAMKLKEIWNDEDFKEIRAKHVGPKGYEEEADQVGDLDDVGF*
Ga0108970_107058311	3300008055	Estuary	IMTMLTPEFLNREIQKDPAGMIMNLKSVWNSPDFKDIKSKLVWPKEYEDEADLVGGLGHLGF*
Ga0114346_10240071	3300008113	Freshwater, Plankton	IARDPAGMIMKIKEVWNDESFKKTRSKLVWPKGYKEKADLLGDLDDVGF*
Ga0102963_13419892	3300009001	Pond Water	WLSVLNHEFNREKARQLVTPLLTPEVLNPEIQKDPAGMAMKLKEIWNDGAFRETRAKLVWPKGYEKEAHLLGDLDDVGF*
Ga0102957_12530272	3300009027	Pond Water	PEVLNKEIQQDPAGMIMKLKAVWNDEVFKEIRSKLVWPKGHEEEADLVGDLDDVGF*
Ga0115566_103035041	3300009071	Pelagic Marine	AQQLILPLMSPEVLNKEIQQDPAGMIMKLKEVWNDENFRETRAKLVFPKGYQDQVDLVGDLDDIGF*
Ga0115567_107174091	3300009508	Pelagic Marine	IQKDPAGMIMKLKEVWNDESFKEIRAKLVWPKGYGDSAELVGDLDDVGF*
Ga0129348_13049032	3300010296	Freshwater To Marine Saline Gradient	SAEALNKEIQKDPAGMVMKLKEIWNDENFKNIRSKLVWPKGYADDADLVGGLNNIGF*
Ga0129345_11399891	3300010297	Freshwater To Marine Saline Gradient	KDPAGMVMKLKEIWNDENFKNIRSKLVWPKGYADDADLVGGLNNIGF*
Ga0129333_101362091	3300010354	Freshwater To Marine Saline Gradient	QFSPKASSLVSTLISPEDLNKEIAKDPAGMAMKLKGVWNDENFKEIKSKLVWPKGFGEKADLVGDLDDVGF*
Ga0129333_106891961	3300010354	Freshwater To Marine Saline Gradient	QFSPKASSLVSTLISPEDLNKEIAKDPAGMAMKLKGVWNDEVFKKTRAKLVWPKGFGEEADLVGDLDDVGF*
(restricted) Ga0172366_103712221	3300013128	Sediment	KDPAGMIMKLKEVWNEERFREIRSKLVWPRGYEEEMDIVSGLNTLGF*
Ga0177922_109569401	3300013372	Freshwater	KDPAGMIMNLKSVLNDPGFSEIRSKLVWPKGYDDEADLVGGLDSLGF*
Ga0181565_100679921	3300017818	Salt Marsh	GRPEAQKLISTILSAEELNKEIARDPAGMIMKLKEVWNDGNFKETRAKLVWPKGYGDSAELVGDLDDVGF
Ga0181607_101505363	3300017950	Salt Marsh	REAQKLISTIFSAEVLNKEIQKDPTGMIMKLKEIWNDGIFKDIRSKLVWPKGYADDADLVGDLDDVGF
Ga0181577_101873921	3300017951	Salt Marsh	GSPEAQKLILILLSAEELNKEIQKDPAGMIMKLKDIWNDDGFRETRAKLVWPKGYEEEADLVGDLDDVGF
Ga0181583_100424617	3300017952	Salt Marsh	MKLKGIWNDGNFKEIRAKLVWPKGYAEEADLVGDLDDVGF
Ga0181583_102065821	3300017952	Salt Marsh	KVLAEGSPEAQKLILILLSAEELNKEIQKDPAGMIMKLKDIWNDDGFRETRAKLVWPKGYEEEADLVGDLDDVGF
Ga0181580_100484657	3300017956	Salt Marsh	KLKGIWNDGNFKEIRAKLVWPKGYAEEADLVGDLDDVGF
Ga0181580_100552721	3300017956	Salt Marsh	VWNDENFKEIRTKLVWPKGYEEEADLVGDLDDVGF
Ga0181580_105770082	3300017956	Salt Marsh	LKEVWNDENFKETRSKIVLPKGYELEADLVGDLYGVGF
Ga0181580_107139492	3300017956	Salt Marsh	LLTPEVLNKEIQKDPAGMVMKLKQIWNEDAFKETRSKLVWPQGYADEAGLVGDLDDVGF
Ga0181580_109017181	3300017956	Salt Marsh	EVWNDENFKETRSKIVLPKGYELEADLVGDLYGVGF
Ga0181580_110370272	3300017956	Salt Marsh	IWNDEVFKEIRDKLVWPKGYAEEADLVGDLDDVGF
Ga0181571_102019523	3300017957	Salt Marsh	KGIWNDEVFKEIRDKLVWPKGYAEEADLVGDLDDVGF
Ga0181571_103059342	3300017957	Salt Marsh	AEELNKEIARDPAGMIMKLKEVWNDENFKDIRAKLVWPKGYGDSADLVGDLDDVGF
Ga0181571_107459731	3300017957	Salt Marsh	TPEVLNKEIQKDPAGMAMKLKQIWNDEDFKETRSKLVWPQGYEDEVGLVGDLDDVGF
Ga0180437_112016932	3300017963	Hypersaline Lake Sediment	RKLLVTLLSTEALNKEIQKDPTRMIMKLKEVWNNEIFKETRAKLVWPKGYEQEADLAGDLDDIGF
Ga0181589_106910691	3300017964	Salt Marsh	VWNDENFKETRSKIVLPKGYELEADLVGDLYGVGF
Ga0181585_100733024	3300017969	Salt Marsh	MAMKLKGVWNDETFKEIKSKLVWPKGYGDSADLVGDLDDVGF
Ga0181585_105056961	3300017969	Salt Marsh	QKLISTILSVEELNKEIQKDPAGMVMKLKGIWNDEVFKEIRDKLVWPKGYAEEADLVGDLDDVGF
Ga0181576_1003174410	3300017985	Salt Marsh	RMIMNLKEVWNDEDFKVIRSKLVWPKGYDLEADLVGDLYGVGF
Ga0181576_100578714	3300017985	Salt Marsh	ELNKEISKDPAGMAMKLKEVWNDENFKEIRTKLVWPKGYEEEADLVGDLDDVGF
Ga0180432_105676331	3300017989	Hypersaline Lake Sediment	NKEIQKDPAGMIMKLKVVWNDENFRETRAKLVWPKGYGDSADLVGDLDDIGF
Ga0180432_106112872	3300017989	Hypersaline Lake Sediment	LLSAEALNKEIQKDPTRMIMKLKEVWNDEDFKEIISKLVWPKGYDLEADLVGDLYGVGF
Ga0180432_108769661	3300017989	Hypersaline Lake Sediment	KEIQKDPAGMIMKLKEVWNDENFKETRSKLVLPKGYQDDMDLVGDMSDVGF
Ga0181572_100479321	3300018049	Salt Marsh	QKLILILLSAEELNKEIARDPAGMIMKLKEVWNDGNFKETRAKLVWPKGYGDSAELVGDLDDVGF
Ga0181561_103990981	3300018410	Salt Marsh	KVLKEGSPKTQKLILTFLPAEELNKEIQKDPTGMIMKLKDIWNDENFKNIRSKLVWPKGYEQEADLVGDLDDVGF
Ga0181561_105312561	3300018410	Salt Marsh	QKLIPTIFSAEELNKEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYGDQAKLVGDLDDVGF
Ga0181553_102426421	3300018416	Salt Marsh	EISKGPAGMVMKLKEIWNDEDFKEIRSKLVWPKGYEEEADLVGDLDDVGF
Ga0181558_106116311	3300018417	Salt Marsh	KDPARMIMILKEVWNDENFKETRSKIVLPKGYELEADLVGDLYGVGF
Ga0181558_106698462	3300018417	Salt Marsh	AGMIMKLKEVWNDGNFKETRAKLVWPKGYGDSAELVGDLDDVGF
Ga0181563_105051461	3300018420	Salt Marsh	KEIQKDPVGMVMKLKEIWNDEDFKETRDKLVWPKGYGDQAKLVGDLDDVGF
Ga0181563_105944591	3300018420	Salt Marsh	AGMIMKLKDIWNDDGFRETRAKLVWPKGYAEEADLVGDLDDVGF
Ga0181591_105868981	3300018424	Salt Marsh	KELNKEIQKDPARMIMILKEVWNDENFKETRSKIVLPKGYEEEVELVGDLYDVGF
Ga0181568_101668841	3300018428	Salt Marsh	TIFSAEELNKEISKDPAGMVMKLKEIWNDEDFKEIRSKLVWPKGYEEEADLVGDLDDVGF
Ga0181568_105044161	3300018428	Salt Marsh	LNKEIARDPAGMIMKLKEVWNDGNFKETRAKLVWPKGYGDSAELVGDLDDVGF
Ga0181568_110785662	3300018428	Salt Marsh	PAGMIMKLKEVWNDENFKDIRAKLVWPKGYGDSADLVGDLDDVGF
Ga0193973_10388662	3300019737	Sediment	KLKEIWNDEDFKETRDKLVWPKGYGDQAKLVGDLDDVGF
Ga0194000_10886401	3300019750	Sediment	EAQQLIPTIFSAEELNKEIQKDPAGMITKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0194024_10371081	3300019765	Freshwater	LSAEELNKEIQKDPAGMIMKLKEVWNDENFKETRAKLVWPKGYAEEADLVGDLDDVGF
Ga0181554_12010611	3300020052	Salt Marsh	IFSAEELNKEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYGDQAKLVGDLDDVGF
Ga0181554_12021802	3300020052	Salt Marsh	KENQKDPAGMAMKLKEVWNDENFKETRSKLVWPKGYGDSADLVGDLDDIGF
Ga0181554_12685381	3300020052	Salt Marsh	GMIMKLKEIWNDQNFKDIGSKLVWPKGYEGEADLVGGLNSIGF
Ga0181554_13471652	3300020052	Salt Marsh	ILILLSAEELNKEIARDPAGMIMKLKEVWNDGNFKETRAKLVWPKGYGDSAELVGDLDDVGF
Ga0211736_104545531	3300020151	Freshwater	MVLALKSVWNEESFRMIRSKLIWPRGYEKEADLLGDLDDVGF
Ga0181556_11568233	3300020176	Salt Marsh	KLILILLSAEELNKEIQKDPAGMIMKLKDIWNDDGFRETRAKLVWPKGYEEEADLVGDLDDVGF
Ga0181556_12175031	3300020176	Salt Marsh	VEELNKEIQKDPAGMVMKLKGIWNDEVFKEIRDKLVWPKGYAEEADLVGDLDDVGF
Ga0181570_1002974210	3300020207	Salt Marsh	NLKEVWNDEDFKEIRSKLVWPKGYDLEADLVGDLYGVGF
Ga0181557_11794091	3300020601	Salt Marsh	LILILLSAEELNKEISKDPAGMAMKLKEVWNDENFKEIRTKLVWPKGYEEEADLVGDLDDVGF
Ga0213867_12599902	3300021335	Seawater	RFISTILSAKELNKEIQKDPAGMIMKLKEVWNDENFKEIRDKLVLPKGYQDDMDLVGDLDDVGF
Ga0213864_101786641	3300021379	Seawater	AEELNKEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0222715_100810801	3300021960	Estuarine Water	EIQKDPAGMAMKLKEIWNDGAFRETRAKLVWPKGYEKEAHLLGDLDDVGF
Ga0222714_101982073	3300021961	Estuarine Water	TLISPDVLNRKIQKDPAGMIMKLKPFWNDERFKETRSKLVWPKGYEEEMDIVGDINTIGF
Ga0222714_102014903	3300021961	Estuarine Water	KVISTIFSAEELNKEIQKDPARMIMSLKEVWNDEDFKEIRDKLFWPQGYAEEADLVGDLDDVGF
Ga0222719_105897322	3300021964	Estuarine Water	KDPAGMAMKLKGVWNDEIFKDIRSKLVWPKGYADDADLVGDLDDVGF
Ga0212025_10958512	3300022057	Aqueous	LKEGIPKTQQLIATLLTPEMLNKEIQKDPAGMVMNLKEIWNDEGFRETRAKLVWPKDYEKEANLLGDLDDVGF
Ga0212020_10278862	3300022167	Aqueous	KLIPTIFSAEELNKEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0196899_10066452	3300022187	Aqueous	VLNKEIQQDPAGMIMKLKEVWNDESFRETRDQLVWPKGYEDQADLVGDLDDVGF
Ga0196899_10338063	3300022187	Aqueous	IWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0255771_12421752	3300022900	Salt Marsh	ILPLLTPEVLNKEIQKDPAGMAMKLKQIWNDEDFKETRSKLVWPQGYEDEVGLVGDLDDVGF
Ga0255756_12362571	3300022905	Salt Marsh	MSMKLKEIWNDEDFKEIRSKLVWPKGYEEEADLVGDLDDVGF
Ga0255779_10382101	3300022922	Salt Marsh	EELNKEIQKDPAGMIMKLKEVWNNEVFKETRSKLVWPKGYEEEVELVGDLYEVGF
Ga0255779_11471453	3300022922	Salt Marsh	TIFSAKELNKEIQKDPAGMIMKLKEVWNDENFKEIRDKLVLPKGYQDDMDLVGDLDDVGF
Ga0255779_13422741	3300022922	Salt Marsh	GMIMKLKDIWNDDGFRETRAKLVWPKGYEEEADLVGDLDDVGF
Ga0255769_101997792	3300022927	Salt Marsh	VLKEGSPKTQKLILTFLPAEELNKEIQKDPTGMIMKLKDIWNDENFKNIRSKLVWPKGYADDADLVGDLDDVGF
Ga0255781_101746541	3300022934	Salt Marsh	IMKLKEVWNDENFKEIRDKLVLPKGYQDDMDLVGDLDDVGF
Ga0255781_102976911	3300022934	Salt Marsh	AKDPAGMIMKLKDIWNDDGFRETRAKLVWPKGYAEEADLVGDLDDVGF
Ga0255780_100043701	3300022935	Salt Marsh	KDPAGMVMKLKEIWNDEDFKEIRSKLVWPKGYEEEADLVGDLDDVGF
Ga0255757_1001185618	3300023117	Salt Marsh	LLFDPQNHLFTAKELNKEIQKDPARMIMILKEVWNDEDFKEIRSKLVWPKGYDLEADLVGDLYGVGF
Ga0255757_100280601	3300023117	Salt Marsh	VMKLKGIWNDGNFKEIRAKLVWPKGYAEEADLVGDLDDVGF
Ga0255757_103493511	3300023117	Salt Marsh	SAKELNKEIQKDPAGMIMKLKEVWNDENFKEIRDKLVLPKGYQDDMDLVGDLDDVGF
Ga0210003_13854821	3300024262	Deep Subsurface	SESEEAKKLALTLLTPEILNVEIQKDPTGMIMKLKEVWNDESFREIRSKLVWPRGYEEEAGLVGDLDDVGF
Ga0208149_11070642	3300025610	Aqueous	LSVEELNKEIQKDPAGMVMNLKGIWNDGNFKEIRAKLVWPKGYGDSADLVGDLDDIGF
Ga0209194_10928721	3300025632	Pelagic Marine	PAGMIMKLKEVWNDESFKEIRAKLVWPKGYGDSAELVGDLDDVGF
Ga0208428_11489731	3300025653	Aqueous	EIQKDPAGMVMNLKEIWNDEGFRETRAKLVWPKDYEKEANLLGDLDDVGF
Ga0208898_10687651	3300025671	Aqueous	KEIQKDPAGMIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0208898_11327371	3300025671	Aqueous	VLNKEIQKDPAGMIMKLKEIWNDDNFKETRDKLVWPTGYGDSADLVGDLDDVGF
Ga0208150_10321851	3300025751	Aqueous	MKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF
Ga0209137_11225392	3300025767	Marine	LKEIWNDEVFKKTRAKLVWPKGYDDSADLVGDLNNIGF
Ga0208427_11065923	3300025771	Aqueous	LLTPEVLNKEIQKDPAGMAMKLKEVWNDENFKETRSKLVWPQGYADEAGLVGDLDDVGF
Ga0208975_10838642	3300027659	Freshwater Lentic	KLKGVWNDGVFKKTRAKLVWPKGYAEKADLLGDLDDVGF
Ga0315907_109796002	3300031758	Freshwater	AGMIMKLKGVWNHEVFKKTRAKLVWPKGYSDDADLVGDLDDVGF
Ga0315900_110536282	3300031787	Freshwater	TLLPAEALNKEIAKDPAGMIMKLKPIWNDRFFKKTRAKLVWPKGYSDDADLVGDLDDVGF
Ga0315909_106089961	3300031857	Freshwater	KPIWNDENFKKTRSNLVWPKGYEEEAGLVGDLDDVGF
Ga0335068_0461955_430_594	3300034116	Freshwater	ELNKEIAKDPTGMIMKLKKIWNDENFKKTRSNLVWPKGYKEKADLLGDLDDVGF
Ga0335016_0593164_465_593	3300034166	Freshwater	MAMKLKGVWNDEIFKKTRAKLVWPKGFGEKADLVGDLDDVGF
Ga0348335_078223_850_1053	3300034374	Aqueous	MARQFILPLLTPEVLNKEIQKDPVGMVMKLKEIWNDEDFKETRDKLVWPKGYGDQAKLVGDLDDVGF
Ga0348336_010910_86_289	3300034375	Aqueous	MARQFILPLLTPEVLNKEIQKDPAGMAMKLKEVWNDENFKETRSKLVWPQGYADEAGLVGDLDDVGF
Ga0348336_053852_9_137	3300034375	Aqueous	MIMKLKDIWNDDGFKETRSKLVWPKGYAEEADLVGDLDDVGF