Basic Information | |
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Family ID | F075813 |
Family Type | Metagenome |
Number of Sequences | 118 |
Average Sequence Length | 43 residues |
Representative Sequence | MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLEDDPDQL |
Number of Associated Samples | 68 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 99.15 % |
% of genes near scaffold ends (potentially truncated) | 94.07 % |
% of genes from short scaffolds (< 2000 bps) | 91.53 % |
Associated GOLD sequencing projects | 66 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.35 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (83.898 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.119 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.593 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.068 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 23.19% β-sheet: 0.00% Coil/Unstructured: 76.81% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.35 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Serpentine Soil Soil Sub-Biocrust Soil Soil Groundwater Sand Soil Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Rhizosphere Agave Agave |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPWNP_02920820 | 2067725001 | Soil | VASPRRFPFDDDDRPSGSVRPLSQADLQAILAHLDDDPDQLLAGTSVDR |
Ga0058697_103818701 | 3300005562 | Agave | MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLT |
Ga0081538_101275312 | 3300005981 | Tabebuia Heterophylla Rhizosphere | KEASMASPSHHRFPYDDDDRPSGSVQPLSQADLQAILAHLDD* |
Ga0081538_101923112 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MARSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLTDDEPDQLLAGTGADR |
Ga0081538_102082652 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MANSRPWPFDDEDRPSGSVRPPSRAHLRAIFAHLKHQDSDDVLARTGG |
Ga0075428_1025948272 | 3300006844 | Populus Rhizosphere | MSSPQPWPFDDDEDRPSGSVRPLSQADLQAILAHL |
Ga0075421_1017572831 | 3300006845 | Populus Rhizosphere | MASPRPWPFDDDRPSGSIQPLSHADLQAILAHLGDDPDQLLA |
Ga0075419_100572501 | 3300006969 | Populus Rhizosphere | MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPHQQLAGPR |
Ga0075435_1006020432 | 3300007076 | Populus Rhizosphere | MASSRPWPFEDDDRPRGSVRPLSQADLQAILAHFSDDPDELLAGTNADRP |
Ga0111539_101240721 | 3300009094 | Populus Rhizosphere | MASSRPWPFEDDDRPRGSVRPLSQADLQAILAHFSDDPDE |
Ga0075418_109086063 | 3300009100 | Populus Rhizosphere | MASPRRFPFDDEDRPSGSVRPLSHADFQAILAHLGDDPDELLAGTGADRP |
Ga0075418_115994921 | 3300009100 | Populus Rhizosphere | MSSPQPWPFDDDEDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTGAD |
Ga0075418_127633021 | 3300009100 | Populus Rhizosphere | MPSPRPWPFHDEDRPSGSVRPLSPADLQAILAHLGDDTPTSR* |
Ga0114129_124894741 | 3300009147 | Populus Rhizosphere | MAGSPPWPFDANDRPSGSVQPLSHADLQAILAHLSDDPDQLLAGTGADR |
Ga0111538_103085891 | 3300009156 | Populus Rhizosphere | MASSPPWPFDDNDRPSGSVQPLSQADLQAILAHLGDDPDE |
Ga0111538_107705663 | 3300009156 | Populus Rhizosphere | MASSRPWPFEDDDRPRGSVRPLSQADLQAILAHFSDDPDELLAGTNA |
Ga0126307_100161127 | 3300009789 | Serpentine Soil | MANSRPWPFEDDDRPSGSVRPLSPADLQAIVAHLASDAPG* |
Ga0126307_106565732 | 3300009789 | Serpentine Soil | MASPTPERFPFDDDDRPSGSVRPLSQADLQAILAHLGDDSD |
Ga0105061_10864431 | 3300009807 | Groundwater Sand | MASSQPWSFEDDDRPSGSIQPLSQADLQAILAHLSDDPDQLLTGTGADRP |
Ga0126313_101113042 | 3300009840 | Serpentine Soil | MASSRSWPSDDDDRPSGSVRPLSPADLQAILAHLGDDCDELLA |
Ga0126313_115401402 | 3300009840 | Serpentine Soil | MASSRPWPFDDHDRPSGSVQPRSQTDLQAILAHLGDDPDELLAG |
Ga0126305_103139932 | 3300010036 | Serpentine Soil | MASSRSWPFDDDDRPSGSVRPLSPADLQAIVAHLASDAPG* |
Ga0126308_107492382 | 3300010040 | Serpentine Soil | MASPRPWPFDDDDRPSGSVRPLSPADLQALLAHLG |
Ga0126312_104172532 | 3300010041 | Serpentine Soil | MASPRPWPFDDDEDQPSGSVRPLSPADLQAILAHL |
Ga0126312_104853431 | 3300010041 | Serpentine Soil | MASSRSWPFDDDDRPSGSVRPLSQADLQAILAHVSEDPDELLAGTG |
Ga0126312_104987211 | 3300010041 | Serpentine Soil | MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLADDSDELLAG |
Ga0126312_106929902 | 3300010041 | Serpentine Soil | MASSRPWPSDDDEDRPSGSVRPLSQADLQAILAPLGDDPDELLADTIGDR |
Ga0126314_108244312 | 3300010042 | Serpentine Soil | MASPRPWPFDDEDRPSGSVRPLSRADLQAILAHLAD |
Ga0126314_110115082 | 3300010042 | Serpentine Soil | MASSQPWPFDDDRPSGSVQPLSQADLQAILAHLGDDPDQLLAGPAPAKHAPPTP |
Ga0126314_113755292 | 3300010042 | Serpentine Soil | MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGT |
Ga0126314_114611162 | 3300010042 | Serpentine Soil | MASSRPWPFDDHDRPSGSVQPLSQADLQAILAHLGDDPD |
Ga0126310_102485311 | 3300010044 | Serpentine Soil | MANPRPWPFDDDDRPSGSVRPLNQADLQAILAHLNEESDELLAGTS |
Ga0126310_111862342 | 3300010044 | Serpentine Soil | MASSRSWPCDDDRPSGSVRPLSQTDLEAILAHLADDPDGL |
Ga0126311_114144562 | 3300010045 | Serpentine Soil | MASPRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLANTGAGRPV |
Ga0126311_115066482 | 3300010045 | Serpentine Soil | MARSRPWPFDEDRPSGSVRPLSQADLQTILAHLSDDPD |
Ga0126311_119383261 | 3300010045 | Serpentine Soil | MASSQPWPFEDDDRPSGSVQPLRQSDLQAILAHLGD |
Ga0126306_102743952 | 3300010166 | Serpentine Soil | MAGSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLTSDD |
Ga0058701_108058831 | 3300010395 | Agave | MASIRPWPFDDDDDRLRGSVRPLSQADLQAILAHLTSDPEQLLAGTNADRPV |
Ga0137375_102468372 | 3300012360 | Vadose Zone Soil | MASSTPRRFPFDDDDRPSGSVRPLGQADLYAILAHL |
Ga0162650_1000722552 | 3300012939 | Soil | MASPRPWPFDDEDRPSGSVRPLSQADLQTILAHLG |
Ga0182000_102018732 | 3300014487 | Soil | MASSRPWPFDDDDRPSGSVRPLSQTDLQAILAHLGDDPDELLA |
Ga0182000_104090631 | 3300014487 | Soil | MVSARPWPFDDDDRPSGSVRPLSPADLQAILAHLGDDPDELL |
Ga0182001_105792182 | 3300014488 | Soil | MVSPNPHWFPFDDDDRPSGSVQPLSQADLQAILAIAAGGGVL |
Ga0182007_100310742 | 3300015262 | Rhizosphere | MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLNGDPDQPSLA |
Ga0184620_102404191 | 3300018051 | Groundwater Sediment | MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLEDDPDQL |
Ga0184621_101701391 | 3300018054 | Groundwater Sediment | MASPRPWPFDDDDRSSGSVRPLSRADLQAILAHLAEDR |
Ga0184621_102844392 | 3300018054 | Groundwater Sediment | MASPRPWPFDDDRPSGSVRPLGQADLQAILAHLEDDPDQLP |
Ga0190268_120824661 | 3300018466 | Soil | MASSRPWPFDDDRPSGSVRPLSQADVQAILAHLNNDPDQLLA |
Ga0190267_112568651 | 3300019767 | Soil | MASSRPWPFDEDDWPSGSVRPLSQADLQAILAHLADESDQLLTGAGADRP |
Ga0224452_12444592 | 3300022534 | Groundwater Sediment | MARPRRFPSGDDDRPSGSVQPLSQADLEAILAHLGDDPDQLLAGTGADRPV |
Ga0224452_12889151 | 3300022534 | Groundwater Sediment | MASSRPWPFDDDDDRPSGSVRQLSQADLQAILGDDPDQLVVGPGGGQAHSGG |
Ga0222623_100306422 | 3300022694 | Groundwater Sediment | MASSRSWPFDEDDRPSGSVRPLSKADLQAILAHLGDDPD |
Ga0222623_102950821 | 3300022694 | Groundwater Sediment | MANARAWPFDDDDRPSGSVRPLSQADLQAILAHLNSDDPDALL |
Ga0222622_107420601 | 3300022756 | Groundwater Sediment | MASPRPWPFEDDDRPSGSVRPLSQADLEAILAHLG |
Ga0208070_1003441 | 3300026665 | Soil | MASSPPWPFDDDDDRPSGSVRPLSPADLQAILAHLG |
Ga0209795_102226552 | 3300027718 | Agave | MASSRPWPFDDDDRPSGSVRPLSQADLQAILAHLGDDSDQLLAD |
Ga0209461_101686531 | 3300027750 | Agave | MASPRPWPFDDEDRPSGSVRPLSQADLQAILAHLGEDPDELPAGT |
Ga0307321_10648881 | 3300028704 | Soil | MASPRPWPLDDDEDRPSGSVRPLSQADLQAILAHLNNDR |
Ga0307276_100933571 | 3300028705 | Soil | MASPRPWPFDDDDRPSGSVRPLSHADLQAILAHLEDDPD |
Ga0307301_102473252 | 3300028719 | Soil | MANARAWPFDDDADRPSGSVRPLSQADLQAILAHLTSDDPDELLAGT |
Ga0307317_102015831 | 3300028720 | Soil | MANARAWPFDDDDRPSGSVRPLSQADLQAILAHLNS |
Ga0307319_100747661 | 3300028722 | Soil | MASPRPWPFDDDDRPSGSVQPLSQADLQAILAHLGD |
Ga0307319_103191912 | 3300028722 | Soil | MANPRPWPFDDDDRPSGSVRPLSHADLQAILAHLGDDPDQLL |
Ga0307318_100064003 | 3300028744 | Soil | MASPRPWPFDDDDRPSGSVQPLSQADLQAILAHLGDD |
Ga0307320_101887301 | 3300028771 | Soil | MASSPSWPFDDDDRPSGSVRPLSQADLQAILAHLGDDPDQLLAG |
Ga0307320_102599541 | 3300028771 | Soil | MANPRPWPFDDDDPPSGSVRPLSPADLQAILAHLGDDPD |
Ga0307290_100486452 | 3300028791 | Soil | MARPRRFPSGDDDRPSGSVQPLSQADLEAILAHLGDDPDQLL |
Ga0307290_100952611 | 3300028791 | Soil | MASPRPWPLDDDEDRPSGSVRPLSQADLQAILAHLNNDRDELLSGTS |
Ga0307299_102675401 | 3300028793 | Soil | MAGSRPWPFEDDDRPSGSVRPLSQSELQAILAHLTS |
Ga0307287_100007676 | 3300028796 | Soil | MASSRSWPFDEDDRPSGSVRPLSKADLQAILAHIGDDPD |
Ga0307287_101053501 | 3300028796 | Soil | MASSRPWPFDDDEDRPSGSVRPLSHADLQAILAHLTSDDPEELLAGTDADRP |
Ga0307287_101909532 | 3300028796 | Soil | MASPRPWPFEDEDRPSGSVRPLSQADLQAILAHLGDDPDQLLAGTDADRPVV |
Ga0307287_102556931 | 3300028796 | Soil | MASSRPWPFDDDRPSGSVRPLSQADLQAILAHLSDDPD |
Ga0307292_100104154 | 3300028811 | Soil | MASPRSWPFDDDDRPSGSVRPLSQADLQAILAHLNSDPDQLLG |
Ga0307302_101466442 | 3300028814 | Soil | MASPRRFPFDDDDRPSGSVQPLSQADLQAILAHLGDDPDELLA |
Ga0307302_101594071 | 3300028814 | Soil | MANPRPWPFDDDDRPSGSVRPLTQADLRAILAHLSDDPQELLAGTDADR |
Ga0307302_105697141 | 3300028814 | Soil | MANARAWPFDDADRPSGSVRPLSQADLQAVLAHLGDDPDELLAGTSADRPVV |
Ga0307296_100690912 | 3300028819 | Soil | MASSRSWPFDEDDRPSGSVRPLSKADLQAILAHLGLPEHGLR |
Ga0307296_103432941 | 3300028819 | Soil | MASSRPWPLDDDDRPSGSVRPLSQADLRAILNHLTD |
Ga0307314_100140591 | 3300028872 | Soil | MASPRPWPFDDDDRPSGSVRPLSPADLQAILAHLGNDPDQLLAGTDAD |
Ga0307289_104322262 | 3300028875 | Soil | MASSRPWPLDDDDRPSGSVRPLSQADLRAILNHLTDADQLLAGTDA |
Ga0307286_100314402 | 3300028876 | Soil | MASSRSWPFDEDDRPSGSVRPLSKADLQAILAHLGLPEHG |
Ga0307286_100357101 | 3300028876 | Soil | MASPRPWPFDDDDRPSGSVRPLSHADLQAILAHLEDDPDQLPTGTSAG |
Ga0307286_103577832 | 3300028876 | Soil | MTSSPSSPFDDDRPSGSIQPLSQADLQAILAHLSDDPDQLLIGTS |
Ga0307300_100555642 | 3300028880 | Soil | MASPRPWPFDDDDRPSGSVRPLSPADLQAILAHLGNDPDQLLAGTD |
Ga0307277_101898592 | 3300028881 | Soil | MASSQSWPFEDEDRPSGSVRPLSQADLQAILAHLSNDPD |
Ga0307308_104179652 | 3300028884 | Soil | MAGSRPWPFEDDDRPSGSIQPLSQADLQAILAHLGDAPDQL |
Ga0268255_101996321 | 3300030516 | Agave | MASSRPWPFDDDEDRPSGSVRPLSPADLEIILAHLADDPDQLLA |
Ga0307408_1006794351 | 3300031548 | Rhizosphere | MASSQSWPFDDEDRPSGSVRPLSQADLQAVLAHHNDDP |
Ga0307405_103588931 | 3300031731 | Rhizosphere | MASSRSWPFDDQDRPSGSVQPLTQADLQAILAHLTNDP |
Ga0307405_105042021 | 3300031731 | Rhizosphere | MASSRPWPFDDEDDRPSGSVRPLSQGDLQAILAHLNNNAP |
Ga0307413_101468312 | 3300031824 | Rhizosphere | MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLGDDP |
Ga0307413_115046182 | 3300031824 | Rhizosphere | MASPTPRRFPFDDDDRPSGSVRPLSQADLQAVLAHL |
Ga0307413_121913421 | 3300031824 | Rhizosphere | MASSQPWPFDDDDRPSGSVRPLSPADLQAILAHLGDDSD |
Ga0307410_101789771 | 3300031852 | Rhizosphere | MANARAWPFDDDDRPSGSVRPLSQADLQAILAHLNSD |
Ga0307410_109416131 | 3300031852 | Rhizosphere | MASSRPWPFDDDDDRPSGSVRPLSQADLQAILAHLSDDPDGLLAGTGADQ |
Ga0307410_110697181 | 3300031852 | Rhizosphere | MASARPWPFDDDDRASGSVRPLSRADLQAILAHLNE |
Ga0307410_111190621 | 3300031852 | Rhizosphere | MASSRPWPFDEEDRPSGSVRPLSQADLQAILAHLGDDPDQL |
Ga0307410_114959112 | 3300031852 | Rhizosphere | MASSPPWPFDDDDRPSGSVRPLSQADLQAILAHLSDDPDELLAGTD |
Ga0307406_100428051 | 3300031901 | Rhizosphere | MARSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLSDDPDQLLAGTGEDRPVVAV |
Ga0307406_111082461 | 3300031901 | Rhizosphere | MASSQPWPFDDDEDRPSGSVRPLSHADLQAILAHLN |
Ga0307406_112334811 | 3300031901 | Rhizosphere | MASPRPWPFEDDDRPSGSVRPLSQADLQAILAHLGDELLA |
Ga0307406_119650351 | 3300031901 | Rhizosphere | MASSRPWPFEDDDRPSGSVQPLSQADLQAILVHLDDDPDE |
Ga0307407_104498231 | 3300031903 | Rhizosphere | MASSRSWPFDDDDDRPSGSVRPLSQADLQAILAHLGDDPDEL |
Ga0307407_106763511 | 3300031903 | Rhizosphere | MASSRSWPFDDDEDRPSGSVRPLSQADLQTVLAHLTDDDPDQPLVGTDADRPLVV |
Ga0307409_1006012421 | 3300031995 | Rhizosphere | MASSRPWPFDDEDRPSGSVRPLSQADLQAILAHLGDDPDELL |
Ga0307409_1018201581 | 3300031995 | Rhizosphere | MASSQPWPLDDDDRPSGSVRPLSHADLQAILAHLSDDSE |
Ga0307416_1001794931 | 3300032002 | Rhizosphere | MARSRPWPFDDDEDRPSGSVRPLSQADLQAILAHLSDDPDQLLAGTGEDR |
Ga0307416_1007412692 | 3300032002 | Rhizosphere | MASPTPQRFPFHDDDRPSGSVRPLSQADLQAILGYLGDDSEELLA |
Ga0307416_1021298801 | 3300032002 | Rhizosphere | MASSRPWPFDEEDRPSGSVRPLSQADLQAILAHLGDDP |
Ga0307416_1023323542 | 3300032002 | Rhizosphere | MASSRPWPFEDDDRPSGSVRPLSQSDLQAILAHLTSDPNELLAG |
Ga0307415_1005564451 | 3300032126 | Rhizosphere | MASPQRFPFDDNDRPSGSVRPLSQADLQAILAHLGDDPDQLLAD |
Ga0307415_1008486891 | 3300032126 | Rhizosphere | MASPRSWPFDDDDRPSGSVRPLSQADLQAILAHLNNGPDQL |
Ga0307415_1017246612 | 3300032126 | Rhizosphere | MASSRPWPFDDEGDRPSGSVRPLSQADLQAILAHLGDDPDELLAGT |
Ga0268251_100875921 | 3300032159 | Agave | MASSRSWPFDDEDRPSGSVRPLSQADLQAILAHLNNNDPDQLLAGT |
Ga0268251_104361841 | 3300032159 | Agave | MASSRPWPLDDEDRPSGSVRPLSQADLQAILAPLKNNDPDQLLAGTATIGR |
Ga0268251_105243402 | 3300032159 | Agave | MASSRPWPFDDDEDRLSGSVRPLSRADLQAILAHLGDDPDELLAGTDADRPV |
Ga0334911_033602_598_723 | 3300034131 | Sub-Biocrust Soil | MASPHRFPFDDDDRPSGSVQPLSQADLQAILAHLGDDPDELL |
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