Metagenome Family F075809

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075809
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	56 residues
Representative Sequence	LICGECGCASDELGRGWVAFTGEDPDGHEPTSVAIMCPVCAAREFEWRPEAAEDYT
Number of Associated Samples	63
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	27.35 %
% of genes near scaffold ends (potentially truncated)	33.90 %
% of genes from short scaffolds (< 2000 bps)	92.37 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.576 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (30.508 % of family members)
Environment Ontology (ENVO)	Unclassified (33.898 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.695 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.10% β-sheet: 14.29% Coil/Unstructured: 72.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF09413	DUF2007	2.56
PF01680	SOR_SNZ	1.71
PF06475	Glycolipid_bind	1.71
PF00989	PAS	0.85
PF11781	zf-RRN7	0.85
PF00296	Bac_luciferase	0.85
PF13231	PMT_2	0.85
PF09356	Phage_BR0599	0.85
PF08281	Sigma70_r4_2	0.85
PF12728	HTH_17	0.85
PF09278	MerR-DNA-bind	0.85
PF00892	EamA	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	1.71
COG3554	Uncharacterized conserved protein	Function unknown [S]	1.71
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
All Organisms	root	All Organisms	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
cellular organisms	root	All Organisms → cellular organisms	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.49 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.49 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.71 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.17 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.17 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.85 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.17 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.17 %
Nocardioides thalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides thalensis	0.85 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig823048	Not Available	546	Open in IMG/M
3300000956\|JGI10216J12902_100440305	Not Available	1351	Open in IMG/M
3300000956\|JGI10216J12902_100793328	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300000956\|JGI10216J12902_107102666	Not Available	515	Open in IMG/M
3300000956\|JGI10216J12902_108932702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	718	Open in IMG/M
3300004013\|Ga0055465_10345879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300004157\|Ga0062590_100640267	Not Available	943	Open in IMG/M
3300004463\|Ga0063356_100889108	Not Available	1256	Open in IMG/M
3300004463\|Ga0063356_104868795	Not Available	577	Open in IMG/M
3300004463\|Ga0063356_106197246	Not Available	513	Open in IMG/M
3300004480\|Ga0062592_102621295	Not Available	509	Open in IMG/M
3300005345\|Ga0070692_11035181	Not Available	576	Open in IMG/M
3300005347\|Ga0070668_101732524	Not Available	574	Open in IMG/M
3300005356\|Ga0070674_100029185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3630	Open in IMG/M
3300005356\|Ga0070674_100214679	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300005441\|Ga0070700_101710327	Not Available	540	Open in IMG/M
3300005546\|Ga0070696_101023873	Not Available	691	Open in IMG/M
3300006038\|Ga0075365_10508822	Not Available	851	Open in IMG/M
3300006846\|Ga0075430_101283959	Not Available	602	Open in IMG/M
3300006881\|Ga0068865_100140727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1819	Open in IMG/M
3300006881\|Ga0068865_100934481	Not Available	756	Open in IMG/M
3300006918\|Ga0079216_10888371	Not Available	670	Open in IMG/M
3300009094\|Ga0111539_10047320	All Organisms → cellular organisms → Bacteria	5140	Open in IMG/M
3300009094\|Ga0111539_12792001	Not Available	566	Open in IMG/M
3300009148\|Ga0105243_10245267	Not Available	1596	Open in IMG/M
3300009156\|Ga0111538_10005861	All Organisms → cellular organisms → Bacteria	16715	Open in IMG/M
3300011415\|Ga0137325_1079309	Not Available	728	Open in IMG/M
3300011415\|Ga0137325_1130777	Not Available	574	Open in IMG/M
3300012897\|Ga0157285_10387875	Not Available	500	Open in IMG/M
3300012911\|Ga0157301_10433981	Not Available	517	Open in IMG/M
3300012943\|Ga0164241_10985621	Not Available	618	Open in IMG/M
3300014254\|Ga0075312_1155460	Not Available	510	Open in IMG/M
3300014265\|Ga0075314_1072258	Not Available	709	Open in IMG/M
3300014270\|Ga0075325_1034967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1013	Open in IMG/M
3300014271\|Ga0075326_1254820	Not Available	540	Open in IMG/M
3300014326\|Ga0157380_11109601	Not Available	830	Open in IMG/M
3300014326\|Ga0157380_12666223	Not Available	566	Open in IMG/M
3300015371\|Ga0132258_11585453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1653	Open in IMG/M
3300015374\|Ga0132255_101564013	Not Available	999	Open in IMG/M
3300017792\|Ga0163161_11458498	Not Available	599	Open in IMG/M
3300017965\|Ga0190266_10081756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1266	Open in IMG/M
3300017965\|Ga0190266_10135969	Not Available	1079	Open in IMG/M
3300017965\|Ga0190266_10390652	Not Available	768	Open in IMG/M
3300017965\|Ga0190266_10593057	Not Available	669	Open in IMG/M
3300017965\|Ga0190266_10689584	Not Available	636	Open in IMG/M
3300017965\|Ga0190266_11214872	Not Available	523	Open in IMG/M
3300018466\|Ga0190268_10084481	Not Available	1414	Open in IMG/M
3300018466\|Ga0190268_10176655	Not Available	1131	Open in IMG/M
3300018466\|Ga0190268_10758058	Not Available	726	Open in IMG/M
3300018466\|Ga0190268_10988616	Not Available	668	Open in IMG/M
3300018469\|Ga0190270_10052232	Not Available	2850	Open in IMG/M
3300018469\|Ga0190270_10052232	Not Available	2850	Open in IMG/M
3300018469\|Ga0190270_10197673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1695	Open in IMG/M
3300018469\|Ga0190270_10300627	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300018469\|Ga0190270_10780872	Not Available	959	Open in IMG/M
3300018469\|Ga0190270_11198251	Not Available	797	Open in IMG/M
3300018469\|Ga0190270_11362620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300018469\|Ga0190270_11873036	Not Available	656	Open in IMG/M
3300018469\|Ga0190270_12008739	Not Available	636	Open in IMG/M
3300018476\|Ga0190274_11095095	Not Available	876	Open in IMG/M
3300018476\|Ga0190274_12807476	Not Available	583	Open in IMG/M
3300018476\|Ga0190274_12862210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides thalensis	578	Open in IMG/M
3300018481\|Ga0190271_10174400	Not Available	2108	Open in IMG/M
3300018481\|Ga0190271_10343792	Not Available	1570	Open in IMG/M
3300018481\|Ga0190271_10849930	Not Available	1037	Open in IMG/M
3300018481\|Ga0190271_11289361	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300018481\|Ga0190271_11603244	Not Available	766	Open in IMG/M
3300018481\|Ga0190271_11642547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	757	Open in IMG/M
3300018481\|Ga0190271_12283303	Not Available	646	Open in IMG/M
3300018481\|Ga0190271_12366832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	635	Open in IMG/M
3300018481\|Ga0190271_13345251	Not Available	537	Open in IMG/M
3300018481\|Ga0190271_13827481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300025567\|Ga0210076_1108098	Not Available	609	Open in IMG/M
3300025796\|Ga0210113_1088711	Not Available	614	Open in IMG/M
3300025935\|Ga0207709_10646022	Not Available	842	Open in IMG/M
3300025937\|Ga0207669_10362602	Not Available	1123	Open in IMG/M
3300025938\|Ga0207704_10128423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1750	Open in IMG/M
3300025938\|Ga0207704_10316752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1201	Open in IMG/M
3300026075\|Ga0207708_11681636	Not Available	557	Open in IMG/M
3300027907\|Ga0207428_10382337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1032	Open in IMG/M
3300027909\|Ga0209382_11891640	Not Available	577	Open in IMG/M
3300028587\|Ga0247828_10045939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1868	Open in IMG/M
3300028587\|Ga0247828_10674579	Not Available	640	Open in IMG/M
3300028590\|Ga0247823_10326385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1160	Open in IMG/M
3300028592\|Ga0247822_11160360	Not Available	643	Open in IMG/M
3300028596\|Ga0247821_11169193	Not Available	522	Open in IMG/M
3300028597\|Ga0247820_10685288	Not Available	713	Open in IMG/M
3300028597\|Ga0247820_10761631	Not Available	678	Open in IMG/M
3300028608\|Ga0247819_10677093	Not Available	628	Open in IMG/M
3300028809\|Ga0247824_11114357	Not Available	505	Open in IMG/M
3300028812\|Ga0247825_10053748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2678	Open in IMG/M
3300028812\|Ga0247825_10292650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1137	Open in IMG/M
3300028812\|Ga0247825_10464980	Not Available	898	Open in IMG/M
3300028889\|Ga0247827_11137614	Not Available	538	Open in IMG/M
3300030336\|Ga0247826_10104419	Not Available	1771	Open in IMG/M
3300030336\|Ga0247826_11600763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300031455\|Ga0307505_10663167	Not Available	510	Open in IMG/M
3300031847\|Ga0310907_10512780	Not Available	643	Open in IMG/M
3300031854\|Ga0310904_10088215	Not Available	1670	Open in IMG/M
3300031854\|Ga0310904_10397143	Not Available	902	Open in IMG/M
3300031858\|Ga0310892_10684788	Not Available	702	Open in IMG/M
3300031858\|Ga0310892_11156667	Not Available	550	Open in IMG/M
3300031908\|Ga0310900_10060300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2274	Open in IMG/M
3300031908\|Ga0310900_10893755	Not Available	724	Open in IMG/M
3300031908\|Ga0310900_11169186	Not Available	639	Open in IMG/M
3300031943\|Ga0310885_10867254	Not Available	516	Open in IMG/M
3300032013\|Ga0310906_11370382	Not Available	518	Open in IMG/M
3300032075\|Ga0310890_10199280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1371	Open in IMG/M
3300032075\|Ga0310890_10616862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	841	Open in IMG/M
3300032075\|Ga0310890_11313318	Not Available	592	Open in IMG/M
3300032075\|Ga0310890_11533450	Not Available	550	Open in IMG/M
3300033550\|Ga0247829_10636624	Not Available	887	Open in IMG/M
3300033550\|Ga0247829_10955218	Not Available	713	Open in IMG/M
3300033550\|Ga0247829_11204413	Not Available	628	Open in IMG/M
3300033551\|Ga0247830_10110754	Not Available	1947	Open in IMG/M
3300033551\|Ga0247830_10852132	Not Available	726	Open in IMG/M
3300033551\|Ga0247830_11093712	Not Available	636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.81%
Host-Associated	Host-Associated	21.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.58%
Plants	Host-Associated → Plants	21.19%
Aquatic	Environmental → Aquatic	4.24%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.47%
Marine	Environmental → Aquatic → Marine	2.54%
Sediment	Environmental → Aquatic → Sediment	1.69%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.39%
Loam	Environmental → Terrestrial → Soil → Loam	3.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.39%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.51%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	30.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.39%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	30.51%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.24%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.39%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.54%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.54%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_03430700	2124908045	Soil	MRAEGLLHCEDCGCSSDERASGWAAFTGEDPEGIEPTSVVIMCPVCAAREFEWRPERADGYV
JGI10216J12902_1004403054	3300000956	Soil	VLQCDECGCVSDALGRSWAAFTGEDPDGVEPTSVAIMCPVCAAREFDWRPDEAADYT*
JGI10216J12902_1007933281	3300000956	Soil	WAAFTGEDPDGIEPTSVVIVCPVCAAREFEWRPEAAAGYK*
JGI10216J12902_1071026661	3300000956	Soil	IRTGMPGDVLLICGECGCASDEHARGWTAFAGEDPEGLEPTSVVIMCPVCAALEFEWRPEAADTYT*
JGI10216J12902_1089327022	3300000956	Soil	HCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPLCAAREFEWRPEAAAGYK*
Ga0055465_103458791	3300004013	Natural And Restored Wetlands	MPGEVLLICGECGCASDERAAGWAAFTGEDPDGIEPTSFVVMCPVCAAREFEWRPDAAEGYV*
Ga0062590_1006402672	3300004157	Soil	MPGDVLLICGECGCASDQHAAGWAAFTGEDPDGLEPTSLAIMCPVCAARDFEWRPEAAEGYT*
Ga0063356_1008891081	3300004463	Arabidopsis Thaliana Rhizosphere	MRADGLLHCEDCGCASDDLASGWAAFTGEDPDGIEPTSVVIMCPVCAAREFEWRPEVADGYV*
Ga0063356_1048687951	3300004463	Arabidopsis Thaliana Rhizosphere	MPGDVLLICADCHCASDEHAAGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT*
Ga0063356_1061972462	3300004463	Arabidopsis Thaliana Rhizosphere	MPGDVLLICGECGCASDEHAHGWAAFTGEDPDGLEPTSIAIMCPVCAAREFEWRPEAAEGYT*
Ga0062592_1026212952	3300004480	Soil	MPGDVPLICAECGCASDEHARGWGALTGEDPDGLEPTSVVIMCPVCAALEFGWRPEAAE
Ga0070692_110351811	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	SWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT*
Ga0070668_1017325241	3300005347	Switchgrass Rhizosphere	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPN
Ga0070674_1000291853	3300005356	Miscanthus Rhizosphere	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT*
Ga0070674_1002146792	3300005356	Miscanthus Rhizosphere	LQAWVDSAKIRREMPGDVLLICGECGCASDEHAAGWAAFTGEDPKGLEPTSIVILCPVCAAREFEWRPEAVDGYT*
Ga0070700_1017103272	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VLTCDECGCVSDQLGRSWAAFTGEDPDGLEPTTVAIMCPVCAAREFEWRPEHASDYV*
Ga0070696_1010238732	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VLQCDECGCVSDELGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT*
Ga0075365_105088221	3300006038	Populus Endosphere	ECGCASDEHARGWGAFTREDADDIEPTSVVIMCPVCAAREFEWRPEAAEDYT*
Ga0075430_1012839592	3300006846	Populus Rhizosphere	VSDELGRSWAAFTGEDPDGIEPTTLVIMCPVCAAREFE
Ga0068865_1001407271	3300006881	Miscanthus Rhizosphere	LQASVDSEKIRREMPGDVLLICGECGCASDEHAAGWAAFTGEDPKGLEPTSIVILCPVCAAREFEWRPEAVDGYT*
Ga0068865_1009344811	3300006881	Miscanthus Rhizosphere	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNDAEDYT*
Ga0079216_108883712	3300006918	Agricultural Soil	VSDELGRSWAAFAGEDPDGLEPTSVAIMCPVCAAREFEWRP
Ga0111539_1004732010	3300009094	Populus Rhizosphere	MPGDVLLICGECGCASDEHARGWGAFTREDADDIEPTSVVIMCPVCAAREFEWRPEAAEDYT*
Ga0111539_127920011	3300009094	Populus Rhizosphere	VSDQLGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWRPEYASDY
Ga0105243_102452673	3300009148	Miscanthus Rhizosphere	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFAWRPNEAEDYT*
Ga0111538_100058616	3300009156	Populus Rhizosphere	VSDQLGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWRPEYASDYL*
Ga0137325_10793091	3300011415	Soil	MAGLLHCEDCGCASDHLASGWAAFTGEDPDGVEATSVVIMCPVCAAREFEWRPEAA
Ga0137325_11307771	3300011415	Soil	VSDELGRSWAAFAGEDPDGVESTSIAIMCPVCAAREFDWRPEAAVDYT*
Ga0157285_103878751	3300012897	Soil	LRRTCEASKISDGMPGDVLLICGECGCASDQHAAGWAAFTGEDPDGLEPTSLAIMCPVCAARDFEWRPEAAEGYT*
Ga0157301_104339811	3300012911	Soil	MPGDVLLICAECGCASDEHARGWGALTGEDPDGLEPTSVVIMCPVCAALEFGWRPEAAEDYT*
Ga0164241_109856211	3300012943	Soil	VSDELGRSWAAFSGEDPDGVESTSIAIMCPICAAREFEWRPEAAVDYT*
Ga0075312_11554602	3300014254	Natural And Restored Wetlands	VLRCDECGCASDELGRSWVAFAGEDPDGLEPTSVAIMCPVCAAREFEWRPEAAAGYV*
Ga0075314_10722581	3300014265	Natural And Restored Wetlands	VLRCDECGCASDELGRSWVAFAGEDPDGLEPTSVAIMCPVCAYREFEWRPEAAADYT*
Ga0075325_10349672	3300014270	Natural And Restored Wetlands	MPGEVLLTCAECGCASDERAAGWAGFTGEDPDGIETTSFVIMCPVCAAREYEWRPEAADGYV*
Ga0075326_12548201	3300014271	Natural And Restored Wetlands	AECGCASDERAAGWAGFTGEDPDGIETTSFVIMCPVCAAREFEWRPEAAEGYV*
Ga0157380_111096011	3300014326	Switchgrass Rhizosphere	MPGDVLLICEECGCASDEYAKGWAAFTGEDPDGLEPTSVVVVCPVCVAREFEWRPEAAEAYT*
Ga0157380_126662232	3300014326	Switchgrass Rhizosphere	MPGDVLLICDECGCASDAHAAGWAAFTGVDPNGLEPTSVVIMCPVCAAREFEWRPENADGFV*
Ga0132258_115854532	3300015371	Arabidopsis Rhizosphere	VLTCDECGCVSDQLGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWRPEYASDYV*
Ga0132255_1015640131	3300015374	Arabidopsis Rhizosphere	VSDQLGRSWAAFTGEDPDGLEPTTVAIMCPVCAAREFEWRPEYASDYV*
Ga0163161_114584981	3300017792	Switchgrass Rhizosphere	VSDQLGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWRPEYASDYV
Ga0190266_100817561	3300017965	Soil	MSDELGRSWAAFAGEDPDGVESTSIAIMCPVCAAREFDWRPEAAVDYT
Ga0190266_101359692	3300017965	Soil	VSDELGRSWAAFAGEDPDGVESTSVAIMCPVCAAREFEWRPEAAVDYT
Ga0190266_103906523	3300017965	Soil	GCASDEFAKGRAAFTGEDPDGLEPTSVVIMCPVCAAREFEWRPEAAEGYT
Ga0190266_105930571	3300017965	Soil	MPADVLLICAECGCASDQDARGWVAFTGEDPDGLELASFVVMCPVCAAREFEWRPEAAEGYT
Ga0190266_106895841	3300017965	Soil	MPGDVLLICGECGCASDGHAAGWAAFTGEDPDGLEPTSLAIMCPVCAAREFEWRPEAAEAYT
Ga0190266_112148722	3300017965	Soil	RSWAAFTGEDPDGIEPTTVAVMCPVCAAREFEWRPEYASDYV
Ga0190268_100844811	3300018466	Soil	MRVAGLLHCEDCGRASDHRASGWAAFTGEDPDGVEPTSVVIMCPVCAAREFEWRPETA
Ga0190268_101766551	3300018466	Soil	MPGDVLLTCGECGCASDEHAKGWAAFTGEDPDGLEPTSVVIMCPVCAAREFEWRPEAAEGYT
Ga0190268_107580581	3300018466	Soil	VSDELGRSWAAFAGEDPDGVESTSIAIMCPVCAAREFDWRPEAAVDYT
Ga0190268_109886162	3300018466	Soil	VLRCDECGCVSDELGRSWAAFAGEDPDGVESTSIAIMCPVCAAREFDWRPEAAVDYT
Ga0190270_100522321	3300018469	Soil	VSDELGRSWAAFSGEDPDGVESTSIAIMCPICAAREFEWRPEAAVDYT
Ga0190270_100522323	3300018469	Soil	MRADGLLHCEDCGCASDERAAGWAAFTGEDPEGIEETSVVIMCPVCAAREFEWRPERADGYV
Ga0190270_101976734	3300018469	Soil	MIASGMPGDVLLICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPTCAAREFEWRPEAAAGYK
Ga0190270_103006272	3300018469	Soil	MPGDVLLICGECGCASDEHARGWAAFTGEDPDGIEPTSVEIMCPVCAVREFEWKPENAEGYT
Ga0190270_107808722	3300018469	Soil	MRNRIHNEMRGEGLLHCEDCGRASDHRASGWAAFTGEDPDGVEPTSVVIMCPVCAAREFEWRPEAAESDV
Ga0190270_111982511	3300018469	Soil	MPGDVLLICAECGCASDRDARGWAAFTGEDADGIEPTIVAVMCPVCATREFEWRPDAAEGYT
Ga0190270_113626203	3300018469	Soil	EPSKLRTGMPGDVLLTCGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPICAAREFDWRPEAAAGYK
Ga0190270_118730362	3300018469	Soil	MQGEGLLHCEDCGRASDHRASGWAAFTGEDPDGVEPTSVVIMCPACAAREFEWRPEAAAEGDV
Ga0190270_120087391	3300018469	Soil	VSDELGRSWAAFAGDDPDGLEPTSVAIMCPVCAAREFEW
Ga0190274_110950951	3300018476	Soil	VLRCDECGCVSDELGRSWAAFSGEDPDGVESTSIAIMCPVCAAREFDWRPEAAVDYT
Ga0190274_128074762	3300018476	Soil	GLLHCEDCGCASDDRATGWAAFTGEDPEGIEATSVVIMCPVCAAREFEWRPEAADGYV
Ga0190274_128622102	3300018476	Soil	LICGECHCASDEHAKGWAGFTGEDPHGIEPTSVVIVCPVCAAREFEWRPEAAAGYK
Ga0190271_101744006	3300018481	Soil	HCEDCGRASDHRASGWAAFTGEDPDGVEPTSVVIMCPVCAAREFEWRPETAAEGDV
Ga0190271_103437922	3300018481	Soil	MRADGLLHCEDCGCASDERAAGWAAFTGEDPEGIEATSVVIMCPVCAAREFEWRPERADGYV
Ga0190271_108499301	3300018481	Soil	MRGEGLLHCEDCGRASDHRASGWAAFTGEDPDGVEPTSVVIMCPVCAAREFEWRPEAAESDV
Ga0190271_112893611	3300018481	Soil	MPGDVLLTCGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPICAARE
Ga0190271_116032442	3300018481	Soil	VLRCDECGCVSDELGRSWAAFAGEDPDGHEPTSVAIMCPVCAAREFDCRPSAAESYV
Ga0190271_116425471	3300018481	Soil	MIASGMPGDVRLICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPICAAREFEWRPEAAAGYK
Ga0190271_122833031	3300018481	Soil	MHGDVLLTCGECGCASDEHTRGWAAFTGEDPDGIEPTSVVIVCPVCAAREFE
Ga0190271_123668322	3300018481	Soil	MPGDVLLICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPICPAREFEWRPEAAAGYN
Ga0190271_133452512	3300018481	Soil	ECGCASDECAKGWAGFTGEDPNGVEPTSVVIMCPVCAAREFEWRPEAAEGYT
Ga0190271_138274812	3300018481	Soil	MPEDVLLTCGECGCASEEHARGWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWHPEASAGYV
Ga0210076_11080983	3300025567	Natural And Restored Wetlands	MPGEVLLICGECGCASDERAAGWAAFTGEDPDGIEPTSFVVMCPVCAAREFEWRPDAAEG
Ga0210113_10887111	3300025796	Natural And Restored Wetlands	VLRCDECGCASDELGRSWVAFAGEDPDGLEPTSVAIMCPVCAAREFEWRPEAAAGYV
Ga0207709_106460222	3300025935	Miscanthus Rhizosphere	VSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFAWRPNEAEDYT
Ga0207669_103626021	3300025937	Miscanthus Rhizosphere	VSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT
Ga0207704_101284231	3300025938	Miscanthus Rhizosphere	LQASVDSEKIRREMPGDVLLICGECGCASDEHAAGWAAFTGEDPKGLEPTSIVILCPVCAAREFEWRPEAVDGYT
Ga0207704_103167523	3300025938	Miscanthus Rhizosphere	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAR
Ga0207708_116816362	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VSDQLGRSWAAFTGEDPDGLEPTTVAIMCPVCAAREFEWRPEHASDYV
Ga0207428_103823371	3300027907	Populus Rhizosphere	VSDQLGRSWAAFTGEDPDGIEPTSVAIMCPVCAAREFEWRPEYA
Ga0209382_118916401	3300027909	Populus Rhizosphere	VMLECDECGCASRGRARGWAAFIGYDPDGLEPMSVGILCPACAAREFEYRPEEGDDYT
Ga0247828_100459392	3300028587	Soil	MPGDVLLICADCHCASDEHASGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT
Ga0247828_106745792	3300028587	Soil	TRIHVEMRADGLLHCEDCGCASDDLASGWAAFTGEDPDGIEPTSVVIMCPVCAAREFEWRPDVADGYV
Ga0247823_103263851	3300028590	Soil	MPGDVLLICADCHCASDEHAAGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT
Ga0247822_111603601	3300028592	Soil	VLQCDECGCVSDELGKSWAAFTGEDPDGVEPTSVAIMCPVCAAREFDWRPNEAEDYT
Ga0247821_111691932	3300028596	Soil	DCGCASDELASRWAAFTGEDPDRIEATSVVIMCPVCAAREFEWRPEAAEGYV
Ga0247820_106852882	3300028597	Soil	LHCEDCGCASDDLASGWAAFTGEDPDGIEPTSVVIMCPVCAAREFEWRPDVADGYV
Ga0247820_107616311	3300028597	Soil	LLICADCHCASDEHASGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT
Ga0247820_109928201	3300028597	Soil	SGEDPDGVEPTSIAIMCPACAAREFAWRPEAAADYT
Ga0247819_106770931	3300028608	Soil	RRGYEPSTIRGRMPGDVLLICADCHCASDEHASGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT
Ga0247824_111143572	3300028809	Soil	GCEPSTIRGGMPGDVLLICADCHCASDEHAAGWAAFTGEDPDGLEPTSIVIMCPVCAAREFEWRPEEADGYT
Ga0247825_100537482	3300028812	Soil	MPGDVLLICAECGCASDEHAAGWGAFTGEDPNGLEPTSILILCPVCAAREFEWRPEAVDSYT
Ga0247825_102926502	3300028812	Soil	VLQCDECGCVSDELGKSWAAFTGEDPDGVEPTSVAIMCPVCA
Ga0247825_104649801	3300028812	Soil	VSDELGKSWAAFAGEDPDGVEPTSVAIMCPVCAAREFDWRPNEAEDYT
Ga0247827_111376141	3300028889	Soil	VSDELGRSWAAFSGEDPDGVEPTSIAIMCPACAARE
Ga0247826_101044193	3300030336	Soil	VSDELGRSWAAFSGEDPDGVEPTSIAIMCPACAAREFAWRPEAAADYT
Ga0247826_116007632	3300030336	Soil	KIPSGMPGDVLLICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPLCAAREFEWRVEAAAGYK
Ga0307505_106631671	3300031455	Soil	VLRCDECGCESDELGRSWAAFSGEDPQGVEPTSIAIMCPVCAAREFDWRPEAAADYT
Ga0310907_105127801	3300031847	Soil	MPGDVLLICGECGCASDELGRGWVAFTGEDPDGHEPTSVAIMCPVCAAREFEWRPEAAEDYT
Ga0310904_100882154	3300031854	Soil	CVSDQLGRSWAAFTGEDPDGMEPTTVAIMCPVCAAREFEWRPEYASDYV
Ga0310904_103971431	3300031854	Soil	LICGECGCASDELGRGWVAFTGEDPDGHEPTSVAIMCPVCAAREFEWRPEAAEDYT
Ga0310892_106847881	3300031858	Soil	ECGCASDELGRGWVAFTGEDPDGHEPTSVAIMCPVCAAREFEWRPEAAEDYT
Ga0310892_111566671	3300031858	Soil	HPAVLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT
Ga0310900_100603004	3300031908	Soil	MPGDVLLICGECGCASDGHAAGWAAFTGEDPGGLEPTSVAIMCPVCASREFEWRPEAAEDYT
Ga0310900_108937551	3300031908	Soil	VLQCDECGCVSDELGKSWAAFTGEDPDGIEPTSVAIMCPVCAAREFDWRPNEAEDYT
Ga0310900_111691861	3300031908	Soil	MCDECGCVSDQLGRSWAAFTGEDPDGMEPTTVAIMCPVCAAREFEWRPEYASDYV
Ga0310885_108672541	3300031943	Soil	MPGDVLLICGECGCASDGHAAGWAAFTGEDPGGLEPTSVAIMCPVCASREFEWRPEAAEGYK
Ga0310906_113703821	3300032013	Soil	MLVEGLLICGECGCASDDLASGWAAFSGEDPDGREPTSVVITCPACAAREFEWRPEAAEGYV
Ga0310890_101992801	3300032075	Soil	MCDECGCVSDQLGRSWAAFTGEDPDGMEPTTVAIMCPVCAAREFEWRPEYASDYL
Ga0310890_106168621	3300032075	Soil	MPGDVLLICADCHCASDERASGWAAFTGEDPDGLELTSIVIMCPVCAAREFEWRPEEADGYT
Ga0310890_113133182	3300032075	Soil	VSDELGRSWAAFAGEDPDGVEPTSIAIMCPACAAREFDWRLEAAADYI
Ga0310890_115334502	3300032075	Soil	LICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPICAAREFEWRPEAAEGYK
Ga0247829_106366242	3300033550	Soil	LICGECHCASDEHAKGWAAFTGEDPDGIEPTSVVIVCPLCAAREFEWRVEAAAGYK
Ga0247829_109552181	3300033550	Soil	VLRCDECGCESDELGRSWAAFSGEDPEGVEPTSIAIMCPVCAAREFDWRPEAAADYT
Ga0247829_112044131	3300033550	Soil	VSDELGRSWAAFSGEDPDGVEPTSIAIMCPACAAREFDWRLEAAADYI
Ga0247830_101107541	3300033551	Soil	GEDPDGIEPTSVVIMCPVCAAREFEWRPDVADGYV
Ga0247830_108521321	3300033551	Soil	HCASDEHARGWAAFTGEDPDGIEPTTVVIVCPICAAREFEWRPEAAEGYK
Ga0247830_110937121	3300033551	Soil	ECGCASDEHAAGWGAFTGEDPNGLEPTSILILCPVCAAREFEWRPEAVDSYT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075809

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences