Basic Information | |
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Family ID | F075790 |
Family Type | Metagenome |
Number of Sequences | 118 |
Average Sequence Length | 52 residues |
Representative Sequence | AAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 3.51 % |
% of genes near scaffold ends (potentially truncated) | 88.98 % |
% of genes from short scaffolds (< 2000 bps) | 85.59 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.56 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (61.017 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.661 % of family members) |
Environment Ontology (ENVO) | Unclassified (39.831 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.95% β-sheet: 0.00% Coil/Unstructured: 54.05% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.56 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Soil Grasslands Soil Soil Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1039110384 | 3300000955 | Soil | IDKAAAVDRLWEIASAHALVRALGEDRVQAIIEEAFASADFRSRHPEVA* |
JGI1027J12803_1044120672 | 3300000955 | Soil | EYRRQSWRLSLLVRQGIVEKTAAVDRLWEIATAHALVRAHGEDRIEAIISEAFADSDFHPMRAEVA* |
JGI10216J12902_1086636302 | 3300000956 | Soil | RQCWRLAALIRHGVVDRVGAADRLWEIAVAHALVRAHGEDRIEAIIAEAFADSDFHPMRAEVA* |
Ga0066388_1003172146 | 3300005332 | Tropical Forest Soil | LAEYRRQSWRLALLVRQGALDRAAAVDRLWEIATAHALVRALGEDRVQAILEEAFAGADLRPLHAEVA* |
Ga0066388_1008819531 | 3300005332 | Tropical Forest Soil | AEYRRQCWRLALLSRQGAIDKTAAVDQLWEIATAHALVRALGEDRVQAILDEAFAGAGFHPMRAEVA* |
Ga0066388_1019020481 | 3300005332 | Tropical Forest Soil | LVRQGALDRAAAVDRLWEIAIAHTLVRALGEDRVQAILDDAFADADFRPLHAEVA* |
Ga0066388_1041044172 | 3300005332 | Tropical Forest Soil | INKDAAVDRLWEIAIAHALVRSLGEDRVQAILDEAFAHADFRPMHSEVA* |
Ga0066388_1042185271 | 3300005332 | Tropical Forest Soil | WRLSMLVRRGIVDKTAAVDRLWEIAIAHALVRSLGEARVQGILDEAFADCDFYPMCIERIA* |
Ga0066388_1043671041 | 3300005332 | Tropical Forest Soil | DRAAAVDRLWEIAIAHTLVRALGEDRVQAILDEAFADADFGPMHAEVA* |
Ga0066388_1058527012 | 3300005332 | Tropical Forest Soil | EIAIAHALVRSLGDDRVQAIISEAFAGIGFRPMYAAEVA* |
Ga0066388_1066256701 | 3300005332 | Tropical Forest Soil | AADRLWEIATAHALVRALGEDRIEAILAEAFADADFRAMHSELVA* |
Ga0066388_1068347331 | 3300005332 | Tropical Forest Soil | DQCWRLAMLVRQGMIERIAAVDRLHEIATAHALVRALGEDRIEAIISEAFADSDFHAMQAEVA* |
Ga0070714_1007907371 | 3300005435 | Agricultural Soil | RQGLVDRTAAADRLWEIAVAHALVRALGEDRIEAIIAEAFADSDFHPMRAEVA* |
Ga0070713_1016628092 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | LALLSRQGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0070698_1000583445 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | LVRQGVIDKAAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0070699_1011851162 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | RQGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0070697_1013216172 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LWEIAVAHALVRAQGEDRIEAIIADAFTDARFRPMHAEVA* |
Ga0070704_1007308382 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | VDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0066905_1019704431 | 3300005713 | Tropical Forest Soil | ALVRQGLVDRTAAADRLWEIAIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA* |
Ga0066903_1029071043 | 3300005764 | Tropical Forest Soil | WEIAIAHALVRALGEERVQSIISEAFAGSDFRPMHAEVA* |
Ga0066903_1036419653 | 3300005764 | Tropical Forest Soil | MIDKTAAVDRLWEIATAHALVRSLGDDRIQAILDEAFAGADFRPMHAEVV* |
Ga0066903_1045736022 | 3300005764 | Tropical Forest Soil | VGKAGAADRLWEIAIAHALVRAHGEDRIEAIVAEAFADKDFHPMQAEVA* |
Ga0066903_1046544871 | 3300005764 | Tropical Forest Soil | AIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA* |
Ga0066903_1055664031 | 3300005764 | Tropical Forest Soil | YRRQCCRLAFLARRGIVNKNAAVDRLWEIATAHALVRALGEDRVQAILDEAFATADFRPIDAEVA* |
Ga0066903_1055683821 | 3300005764 | Tropical Forest Soil | QCWRLALLVRQGALDRVAAVDRLWEIATAHALVRALGEDRVQFIIGEAFADAGFHPMRAEVA* |
Ga0066903_1063028492 | 3300005764 | Tropical Forest Soil | RLYEIAIAHALVRALGEERVEAIIGEAFSDVEFRPMLAEFAA* |
Ga0066903_1073702512 | 3300005764 | Tropical Forest Soil | TAHALVRALGEDRVQAILDDAFADADFRPMHAEVA* |
Ga0070717_106977081 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | AAVDRLWEIAIAHALVRALGEDRIQAILDEAFAGADFRPVRQEVA* |
Ga0070717_113718142 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | AHALVRALGEDRIAAILAEAFADKDFHPMRAEIA* |
Ga0075425_1024000662 | 3300006854 | Populus Rhizosphere | KLVEFRRQCWRLAMLVQQGLVDKPAAVDRLWEIATAHALVRALGEDRVEAILAEAFADADFQPMSAA* |
Ga0111539_105085321 | 3300009094 | Populus Rhizosphere | QGTIDKTAAVDLLYEIAIAHAIVRALGADRVQAILDEAFASADFHPMRAEVA* |
Ga0114129_117755871 | 3300009147 | Populus Rhizosphere | RQGTIDKTVAVDRLYEIAIAHAIVRALGADRVQAILDEAFASADFRPMRAEVA* |
Ga0114129_123984701 | 3300009147 | Populus Rhizosphere | QGAIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0075423_120785202 | 3300009162 | Populus Rhizosphere | AAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0126374_101946513 | 3300009792 | Tropical Forest Soil | LAALVRQGLVDRTAAADRLWEIATAHALVRALGEDRIEAILAEAFADADFRAMHSEVA* |
Ga0126384_107065451 | 3300010046 | Tropical Forest Soil | SSMNIGDSAVSVLVRQGMVGKVEATDRLWEIAIAHAMVRALGEDRIEAILAEAFADANFRAMHSEVA* |
Ga0126384_120346182 | 3300010046 | Tropical Forest Soil | LVRRGAVDRVAAVDRLWEVAVAHALVRALGEDRVQAILDEAFAQAEFRPMDAEVA* |
Ga0126384_124483922 | 3300010046 | Tropical Forest Soil | MLVRRGVVGKAAAVDRLYEIAIAHALVRALGEDRIQAILDEAFAGADFRPVEQEVA* |
Ga0126382_115959642 | 3300010047 | Tropical Forest Soil | RQGVVEKAGAADRLWEIAVAHALVRAHGEDRIEAIVGEAFADKDFHPMQAAEVA* |
Ga0126373_113752503 | 3300010048 | Tropical Forest Soil | AAAVDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPLHAEVA* |
Ga0126370_118362581 | 3300010358 | Tropical Forest Soil | LLVRRGIITKTATVDRLWEIATAHALVRALGDDRIQTIIDEAFTGADFRPMHSEVA* |
Ga0126372_132424701 | 3300010360 | Tropical Forest Soil | EIAIAHALVRALGEDRVQAILDDAFADADFRPMHAEVA* |
Ga0126378_104824633 | 3300010361 | Tropical Forest Soil | AHALVRALGEDRIQAILDEAFAGADFRPVEQEVA* |
Ga0126377_119561862 | 3300010362 | Tropical Forest Soil | AMLVRQGAVDKTAAVDRLWEIAIAHALVRALGEDRIQAILDEAFADADFRPMRSEVA* |
Ga0126383_103735511 | 3300010398 | Tropical Forest Soil | TAAVDRLWEIAIAHALVRALGEDRIQAILDEAFADADFRPMRSEVA* |
Ga0126383_106358233 | 3300010398 | Tropical Forest Soil | LWEIATAHALVRALGEDRIQAILDEAFAGADFRPVQQEVA* |
Ga0126383_112568891 | 3300010398 | Tropical Forest Soil | RRQCWRLAVLIRQGVLEKAGTADGLWEIAVAHALIRAHGEDRMKAILAEAFADNDFHPMQAEVA* |
Ga0126383_117048161 | 3300010398 | Tropical Forest Soil | TAHALVRALGEDRIEAILAEAFADADFRAMHSELVA* |
Ga0126383_126157732 | 3300010398 | Tropical Forest Soil | LAMLVRQDVVNKTAAVDRLWEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA* |
Ga0124850_10825961 | 3300010863 | Tropical Forest Soil | LQNRARPDWAAAVDRLWEIAIAHTLVRALGEGRVQAILVQAILDEAFADADFRPLHAE |
Ga0138505_1000470822 | 3300010999 | Soil | VRQGIIAKPDAIDRLYEIAIAHALVRAVGEDRIEAIIAEAFADTDARPFMAEVA* |
Ga0137374_107883222 | 3300012204 | Vadose Zone Soil | ACLVQQGMIGKAAAVDRLWEIAVAHALVRSLGDNRVQAILDEAFADADFRPMRAEVA* |
Ga0137376_118156771 | 3300012208 | Vadose Zone Soil | VLERAVAVDRLWEIAVAHALVRALGEERVQAIIAEAFADADFRPMHSEVA* |
Ga0137367_101062061 | 3300012353 | Vadose Zone Soil | IIDKTAAIDRLWEIAIAHALVRALGEDRVQAILDEAFADADFRPMRSEVA* |
Ga0137361_111059841 | 3300012362 | Vadose Zone Soil | LVRQGAIEKVDAVDGLWEIATAHALVRALGEDRIQAILAEAFADARFHAMHSEVA* |
Ga0126375_116093452 | 3300012948 | Tropical Forest Soil | MLVRRGTVDKQAAVDRLWEIAIAHALIRALGEDRIQAILDESFADADFRPMASEVA* |
Ga0164306_112253781 | 3300012988 | Soil | GVVCKQAAVDRLYEIAIAHAMVRALGEERVEAIISEAFSGAEFRPMLAEFAA* |
Ga0182036_100218451 | 3300016270 | Soil | IEKAAAVDRLWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA |
Ga0182036_100818951 | 3300016270 | Soil | LALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA |
Ga0182035_101962294 | 3300016341 | Soil | LVRQGFVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFREVA |
Ga0182034_108080481 | 3300016371 | Soil | DRLWEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA |
Ga0182038_115584182 | 3300016445 | Soil | ASAKHKEYRHQAWRLASLVRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA |
Ga0066662_123870532 | 3300018468 | Grasslands Soil | LAHLVRQGAVDKTAAVDRLYEIAIAHALVRALGEDRIEAILVEAFADADFRMKEEVA |
Ga0190270_122219732 | 3300018469 | Soil | EYRRQCWRLAILVQQGATDRAAAVDRLYEIAIAHALVRSLGEDRVEAIIAEAFADCDFHRMPAEVA |
Ga0126371_124711701 | 3300021560 | Tropical Forest Soil | LTEFRRQCWRLALLVRQGSVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFQEVA |
Ga0222622_110276802 | 3300022756 | Groundwater Sediment | RQCWRLSILVRQGALAKPDAVDRLYEIAIAHALVRALGDDRIEAIVAEAFADTDFRALYAEIAS |
Ga0207693_100324206 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | AHLARQGTIDRTAAVERLYEIAIAHALVRALGDDRVQAIIAEAFADVDFRPMHSEVA |
Ga0207700_109567631 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | ADRLWEIAIAHALVRALGEDRIEAIIAEAFADSDFHPMRAEVA |
Ga0207700_109642853 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA |
Ga0207664_106853832 | 3300025929 | Agricultural Soil | VRQGTIDRTAAVERLYEIAIAHALVRALGDDRVQAIIAEAFADVDFRPMHSEVA |
Ga0208981_10921301 | 3300027669 | Forest Soil | CWRLAILARRGVVEKQAAVDLLHEVAIGHALVRSLGEDRIEAILAEAFADSDFCPMAAEV |
Ga0209526_103826322 | 3300028047 | Forest Soil | VVPKAAAVDRLWEIAIAHALVRAHGEDRVQLIIAEPFVAAEAA |
Ga0307297_104055482 | 3300028754 | Soil | VIDKTAAVDRLWEVAVAHALVRALGEDRIQVILAEAFCDVDHVEHAA |
Ga0307316_103974062 | 3300028755 | Soil | AIAHALVRAVGEDRIEAIIAEAFADTDARPFMAEVA |
Ga0307284_102245383 | 3300028799 | Soil | RQGLVDRTAAADRLWEIAIAHALVRALGEDRIEAILAEAFADADFRAMHSELVA |
Ga0307289_102798621 | 3300028875 | Soil | VEYRRQSWRLAILVRQGIIAKPDAIDGLYEIAIAHALVRALGEDRIEAIVAEAFADTDFRPLHAEVA |
Ga0318538_100772643 | 3300031546 | Soil | IAIAHARALGEDRVQAILDDAFADADFRPMHAEVA |
Ga0318528_100251195 | 3300031561 | Soil | AVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA |
Ga0318528_100305873 | 3300031561 | Soil | KLTEFRCQCWRLSMLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA |
Ga0318528_101604002 | 3300031561 | Soil | RQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA |
Ga0318542_104149762 | 3300031668 | Soil | AIAHALVRALGEDRIQAILDESFADVDFRPMASEVA |
Ga0318560_102404973 | 3300031682 | Soil | LDRAAAVDRLWEIATAHALVRALGEDRVQAILDEAFADADFRPLHAEVA |
Ga0318496_105571642 | 3300031713 | Soil | LLVRQGFVDKTAAVDRLYEIAIAHALVRALGEDRVEAIIAEAFASANFREVA |
Ga0306917_102616181 | 3300031719 | Soil | EIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318500_105923011 | 3300031724 | Soil | LDRAAAVDRLWEIATAHALVRALGEDRVQAILDDAFADADFRPMHAEVA |
Ga0306918_100820001 | 3300031744 | Soil | RLSVLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA |
Ga0318537_101026183 | 3300031763 | Soil | LDRAAAVDRPWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318509_100474131 | 3300031768 | Soil | RAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318546_101655163 | 3300031771 | Soil | AAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318508_10122401 | 3300031780 | Soil | ILAGRGVVQKQPAIDLLYEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA |
Ga0318576_102374171 | 3300031796 | Soil | IAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318550_102818791 | 3300031797 | Soil | IAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA |
Ga0318499_101222541 | 3300031832 | Soil | VQKQPAIDLLYEIAIAHALVRALGEERIQAILDEAFADADFRPMHAEVA |
Ga0318511_100812264 | 3300031845 | Soil | EYRRQSWRLALLVRQGALDRAAAVDRPWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318527_104028402 | 3300031859 | Soil | CWRLSVLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEV |
Ga0306919_100842151 | 3300031879 | Soil | KLAEYRRQSWRLALLVRQGALDRAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0306919_113109551 | 3300031879 | Soil | QLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA |
Ga0306925_117217001 | 3300031890 | Soil | FLVKQGLVGKVAAIDRLWEIATAHALVRALGEDRVEAILAEAFAGAEFDPICAEVA |
Ga0318522_101279261 | 3300031894 | Soil | SLSSAVSAGGSLVRRGMIDKTAAVDRLWEIATAHALVRSLGQDRVQAILDEAFAHADFRPMHSEVA |
Ga0318551_105454062 | 3300031896 | Soil | AEYRRQCWRLAMLVRRGMIDKAAAVDRLWEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA |
Ga0318520_104419491 | 3300031897 | Soil | LWEIATAHALVRALGEDRVQAILDDAFADADFRPMHAEVA |
Ga0310912_102628153 | 3300031941 | Soil | EIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0310912_108532201 | 3300031941 | Soil | GRLAMMVRQGTINKTAAIDRLWEVATAYALVRALGEDRIEAILDEAFADADFRAMHLEVA |
Ga0318531_105182791 | 3300031981 | Soil | VRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEVA |
Ga0318569_103092511 | 3300032010 | Soil | LVRQGALDRAAAVDRPWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318507_105222882 | 3300032025 | Soil | LVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA |
Ga0310911_103043813 | 3300032035 | Soil | PWEIAIAHTLVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318556_100981574 | 3300032043 | Soil | IIEKAAAVDRLWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA |
Ga0318558_100338735 | 3300032044 | Soil | AEFRRQCWRLALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA |
Ga0318532_100060357 | 3300032051 | Soil | LWEIATAHALVRALGEDRIQAILDEAFAHADFRPMHSEVA |
Ga0318533_103950431 | 3300032059 | Soil | PWEIAIAHALVRALGEGRVQAILDEAFADADFRPLHAEVA |
Ga0318504_106001292 | 3300032063 | Soil | ALLTRQGMVDKTAAVDRLTEIATAHALVRALGEDRIEAILAEAFADADFHPMRAEVA |
Ga0318513_106445081 | 3300032065 | Soil | WEIAIAHALVRAFGEDRVQSIIGEAFADADFRPMHSEVA |
Ga0306924_124707742 | 3300032076 | Soil | QQCWRLAFLVKQGLVGKVAAIDRLWEIATAHALVRALGEDRVEAILAEAFAGAEFDPICAEVA |
Ga0318525_103272541 | 3300032089 | Soil | RRQCWRLSMLVRRGTVDKQAAVDRLWEIAIAHALVRALGEDRIQAILDESFADVDFRPMASEVA |
Ga0318518_103235531 | 3300032090 | Soil | WEIAIAHALVRALGEDRVQSIIGEAFADADFRPMHSEVA |
Ga0306920_1042983611 | 3300032261 | Soil | VRQGVIDKTAAVDRLWEIATAHALVRALGEDRVQAILDEAFAGADFRPVQQEVA |
Ga0318519_105766731 | 3300033290 | Soil | AWRLASLVRQGAVDKSAAVDQLREIATAHGLVRAHGEDRVQALLAEAFADATFHSMLAEV |
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