Metagenome Family F075665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075665
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	75 residues
Representative Sequence	MDGNDEEQEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDETNED
Number of Associated Samples	59
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	43.22 %
% of genes near scaffold ends (potentially truncated)	20.34 %
% of genes from short scaffolds (< 2000 bps)	72.03 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (61.017 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater (27.119 % of family members)
Environment Ontology (ENVO)	Unclassified (54.237 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (46.610 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 12199900070 22199939705 32199940828 42199942552 5B570J13893_1000788 6B570J13893_1001599 7B570J13893_1021482 8B570J29032_1094252572 9B570J40625_1002525934 10B570J40625_1011356662 11B570J40625_1015118842 12Ga0068876_101613892 13Ga0068872_107111491 14Ga0114340_10100747 15Ga0114346_10479556 16Ga0114347_100369912 17Ga0114347_10536272 18Ga0114350_10123595 19Ga0114350_10275075 20Ga0114350_11275642 21Ga0114355_10331602 22Ga0114355_10381625 23Ga0114841_10428012 24Ga0114363_10122046 25Ga0114363_10202225 26Ga0114363_10385432 27Ga0114363_10730562 28Ga0114363_10970663 29Ga0114363_11279251 30Ga0114363_11685141 31Ga0114363_12428732 32Ga0114876_10248083 33Ga0114876_10617633 34Ga0114880_10381023 35Ga0114880_10711611 36Ga0114880_10758561 37Ga0114880_10784202 38Ga0114880_11521111 39Ga0114880_11731392 40Ga0105090_103336921 41Ga0105098_102685961 42Ga0105103_109202241 43Ga0105102_101364493 44Ga0105096_101086783 45Ga0129336_106947461 46Ga0136713_10209792 47Ga0164293_101432962 48Ga0164293_107764311 49Ga0164293_108867892 50Ga0208201_1144812 51Ga0208720_10015241 52Ga0208234_10370571 53Ga0208858_10127244 54Ga0207938_10131553 55Ga0208235_10115082 56Ga0207942_10278791 57Ga0208600_10556712 58Ga0207909_10398202 59Ga0214163_10501341 60Ga0209392_10110033 61Ga0209704_10548232 62Ga0209972_104616461 63Ga0209990_101837731 64Ga0209253_102253804 65Ga0209820_11576252 66Ga0315907_100121668 67Ga0315907_100264456 68Ga0315907_103210032 69Ga0315907_104751542 70Ga0315907_105276662 71Ga0315907_106020732 72Ga0315907_109026842 73Ga0315900_100149983 74Ga0315900_103417962 75Ga0315900_103962692 76Ga0315900_104369192 77Ga0315900_105227922 78Ga0315900_108625462 79Ga0315900_110903232 80Ga0315909_1001152923 81Ga0315909_100238722 82Ga0315909_100963236 83Ga0315909_101107602 84Ga0315909_101116523 85Ga0315909_102045952 86Ga0315909_102463252 87Ga0315909_105103242 88Ga0315904_1002118110 89Ga0315904_100357286 90Ga0315904_100729593 91Ga0315904_102389513 92Ga0315904_109387762 93Ga0315901_104041523 94Ga0315901_108246022 95Ga0315902_111555842 96Ga0315903_106302272 97Ga0315903_108656681 98Ga0334994_0216573_120_347 99Ga0334996_0259162_660_887 100Ga0334979_0165410_747_974 101Ga0334979_0397580_462_695 102Ga0334987_0718076_283_510 103Ga0335019_0469602_467_697 104Ga0334990_0119893_2_223 105Ga0334990_0426692_110_343 106Ga0335020_0188863_373_606 107Ga0335020_0391668_449_670 108Ga0335010_0238789_752_979 109Ga0335031_0326229_217_450 110Ga0335031_0400494_1_231 111Ga0335031_0557245_67_297 112Ga0335031_0678374_2_184 113Ga0335058_0008170_1482_1715 114Ga0335058_0027833_546_776 115Ga0335058_0029998_2236_2463 116Ga0335061_0035638_451_687 117Ga0335013_0236016_2_193 118Ga0335048_0214989_606_836
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 12199900070 2Ga0068876_101613892 3Ga0114363_12428732 4Ga0335031_0678374_2_184
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 12199900070 2Ga0068876_101613892 3Ga0114363_12428732 4Ga0335031_0678374_2_184
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.67% β-sheet: 0.00% Coil/Unstructured: 21.33%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00149	Metallophos	22.88
PF01510	Amidase_2	22.03
PF05105	Phage_holin_4_1	13.56
PF00959	Phage_lysozyme	5.93
PF12850	Metallophos_2	1.69
PF08291	Peptidase_M15_3	0.85
PF13392	HNH_3	0.85
PF09588	YqaJ	0.85
PF06199	Phage_tail_2	0.85

Showing 1 to 9 of 9 entries

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COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	13.56

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	38.98 %
Unclassified	root	N/A	61.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	14.41 %
Unclassified	root	N/A	61.02 %
Viruses	superkingdom	All Organisms → Viruses	24.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.41 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Unclassified	root	N/A	61.02 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	11.02 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.69 %
Unclassified	root	N/A	61.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.69 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	11.02 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Unclassified	root	N/A	61.02 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.69 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11.02 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.69 %
Unclassified	root	N/A	61.02 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11.02 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.69 %
Unclassified	root	N/A	61.02 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11.02 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.88 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1.69 %
Unclassified	root	N/A	61.02 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.69 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352003\|2199745349	All Organisms → cellular organisms → Bacteria	3740	Open in IMG/M
2199352003\|2199783390	All Organisms → Viruses → Predicted Viral	4812	Open in IMG/M
2199352003\|2199784247	All Organisms → Viruses → Predicted Viral	1347	Open in IMG/M
2199352003\|2199785628	Not Available	1300	Open in IMG/M
3300001273\|B570J13893_100078	Not Available	7754	Open in IMG/M
3300001273\|B570J13893_100159	Not Available	6107	Open in IMG/M
3300001273\|B570J13893_102148	Not Available	1478	Open in IMG/M
3300002408\|B570J29032_109425257	Not Available	755	Open in IMG/M
3300002835\|B570J40625_100252593	All Organisms → Viruses → Predicted Viral	1836	Open in IMG/M
3300002835\|B570J40625_101135666	Not Available	658	Open in IMG/M

Showing 1 to 10 of 118 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.15%
Marine	Environmental → Aquatic → Marine	0.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	0.85%
Lake	Environmental → Aquatic → Freshwater → Lake	42.37%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.78%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	27.97%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	16.95%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	42.37%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	27.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.78%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.24%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	27.12%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	20.34%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	16.95%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.85%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.85%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	6.78%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.39%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.78%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	15.25%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352003	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001273	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M

Showing 1 to 10 of 59 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199900070	2199352003	Freshwater	MEEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
2199939705	2199352003	Freshwater	MEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
2199940828	2199352003	Freshwater	AEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
2199942552	2199352003	Freshwater	MEEEEAELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY
B570J13893_1000788	3300001273	Freshwater	MEEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED*
B570J13893_1001599	3300001273	Freshwater	MEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED*
B570J13893_1021482	3300001273	Freshwater	MEEEEAELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY*
B570J29032_1094252572	3300002408	Freshwater	MEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED*
B570J40625_1002525934	3300002835	Freshwater	MEEEEAELFYEDYDTRSEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED*
B570J40625_1011356662	3300002835	Freshwater	MEEEEAELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED*
B570J40625_1015118842	3300002835	Freshwater	MEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIF
Ga0068876_101613892	3300005527	Freshwater Lake	MTNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED*
Ga0068872_107111491	3300005528	Freshwater Lake	EQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDENED*
Ga0114340_10100747	3300008107	Freshwater, Plankton	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKQRVLDVLDYYISEIHAEIFDEDEN*
Ga0114346_10479556	3300008113	Freshwater, Plankton	MDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKQRVLDVLDYYISEIHAEIFDEDEN*
Ga0114347_100369912	3300008114	Freshwater, Plankton	MEEELFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN*
Ga0114347_10536272	3300008114	Freshwater, Plankton	MDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED*
Ga0114350_10123595	3300008116	Freshwater, Plankton	MSNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDESNED*
Ga0114350_10275075	3300008116	Freshwater, Plankton	MDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDENED*
Ga0114350_11275642	3300008116	Freshwater, Plankton	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNEDED*
Ga0114355_10331602	3300008120	Freshwater, Plankton	MDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED*
Ga0114355_10381625	3300008120	Freshwater, Plankton	MDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDESNED*
Ga0114841_10428012	3300008259	Freshwater, Plankton	MDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED*
Ga0114363_10122046	3300008266	Freshwater, Plankton	MNNMDGNEEEVFYEDYDTRAEIINQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDENED*
Ga0114363_10202225	3300008266	Freshwater, Plankton	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSE
Ga0114363_10385432	3300008266	Freshwater, Plankton	MNNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYISEIHAEIFDETNED*
Ga0114363_10730562	3300008266	Freshwater, Plankton	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED*
Ga0114363_10970663	3300008266	Freshwater, Plankton	MMNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN*
Ga0114363_11279251	3300008266	Freshwater, Plankton	TKYHLTPMNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDENED*
Ga0114363_11685141	3300008266	Freshwater, Plankton	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED*
Ga0114363_12428732	3300008266	Freshwater, Plankton	MEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFD
Ga0114876_10248083	3300008448	Freshwater Lake	MMNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDED*
Ga0114876_10617633	3300008448	Freshwater Lake	MEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN*
Ga0114880_10381023	3300008450	Freshwater Lake	MEEEVFYEDYDTRAEIINQCYYALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDEDEN*
Ga0114880_10711611	3300008450	Freshwater Lake	MSNMDGNEEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED*
Ga0114880_10758561	3300008450	Freshwater Lake	MSNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED*
Ga0114880_10784202	3300008450	Freshwater Lake	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN*
Ga0114880_11521111	3300008450	Freshwater Lake	EEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED*
Ga0114880_11731392	3300008450	Freshwater Lake	MDGNDEEQEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDETNED*
Ga0105090_103336921	3300009075	Freshwater Sediment	MEEEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED*
Ga0105098_102685961	3300009081	Freshwater Sediment	EELYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED*
Ga0105103_109202241	3300009085	Freshwater Sediment	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED*
Ga0105102_101364493	3300009165	Freshwater Sediment	MQEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED*
Ga0105096_101086783	3300009170	Freshwater Sediment	VEEEELFYEDYDTRAEIINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED*
Ga0129336_106947461	3300010370	Freshwater To Marine Saline Gradient	MDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQKVLDVLDYYISEIHAEIFDEQNED*
Ga0136713_10209792	3300011183	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEED*
Ga0164293_101432962	3300013004	Freshwater	MEEAEAEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY*
Ga0164293_107764311	3300013004	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFD
Ga0164293_108867892	3300013004	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED*
Ga0208201_1144812	3300020480	Freshwater	EAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0208720_10015241	3300020495	Freshwater	EEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
Ga0208234_10370571	3300020515	Freshwater	EEEAELFYEDYDTRSEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0208858_10127244	3300020524	Freshwater	MEEAEAEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0207938_10131553	3300020525	Freshwater	MEEEEAELFYEDYDTRSEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0208235_10115082	3300020530	Freshwater	MEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0207942_10278791	3300020549	Freshwater	MEEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0208600_10556712	3300020550	Freshwater	MEAESVEEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0207909_10398202	3300020572	Freshwater	MEEAEVEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0214163_10501341	3300021141	Freshwater	SMEEETEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0209392_10110033	3300027683	Freshwater Sediment	VEEEELFYEDYDTRAEIINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0209704_10548232	3300027693	Freshwater Sediment	MQEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0209972_104616461	3300027793	Freshwater Lake	EQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDENED
Ga0209990_101837731	3300027816	Freshwater Lake	MTNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQ
Ga0209253_102253804	3300027900	Freshwater Lake Sediment	MSNMDGNEEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0209820_11576252	3300027956	Freshwater Sediment	MQEEEAELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0315907_100121668	3300031758	Freshwater	MEEELFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0315907_100264456	3300031758	Freshwater	MDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDESNED
Ga0315907_103210032	3300031758	Freshwater	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0315907_104751542	3300031758	Freshwater	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315907_105276662	3300031758	Freshwater	MSNMDGNEEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315907_106020732	3300031758	Freshwater	MNNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315907_109026842	3300031758	Freshwater	MTNNMDGNDEEQEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDETNED
Ga0315900_100149983	3300031787	Freshwater	MNNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYISEIHAEIFDETNED
Ga0315900_103417962	3300031787	Freshwater	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDENED
Ga0315900_103962692	3300031787	Freshwater	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKQRVLDVLDYYISEIHAEIFDEDEN
Ga0315900_104369192	3300031787	Freshwater	MNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315900_105227922	3300031787	Freshwater	MEEEVFYEDYDTRAEIINQCYYALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0315900_108625462	3300031787	Freshwater	MSNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315900_110903232	3300031787	Freshwater	MMNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315909_1001152923	3300031857	Freshwater	MEEEVFYEDYDTRAEIINQCYYALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDEDEN
Ga0315909_100238722	3300031857	Freshwater	MMNNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315909_100963236	3300031857	Freshwater	MTNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315909_101107602	3300031857	Freshwater	MTNNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315909_101116523	3300031857	Freshwater	MMNNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315909_102045952	3300031857	Freshwater	MMSNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315909_102463252	3300031857	Freshwater	MSNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDETNED
Ga0315909_105103242	3300031857	Freshwater	MSNMDGNDEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315904_1002118110	3300031951	Freshwater	MMNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0315904_100357286	3300031951	Freshwater	MSNMDGNDEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDESNED
Ga0315904_100729593	3300031951	Freshwater	MEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0315904_102389513	3300031951	Freshwater	MNNMDGNEEEVFYEDYDTRAEIINQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDENED
Ga0315904_109387762	3300031951	Freshwater	MMNNMDGNEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDEQNED
Ga0315901_104041523	3300031963	Freshwater	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDEDEN
Ga0315901_108246022	3300031963	Freshwater	MEEEVFYEDYDTRAEIINQCYYALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDENED
Ga0315902_111555842	3300032093	Freshwater	MNNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDENED
Ga0315903_106302272	3300032116	Freshwater	MEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDEDEN
Ga0315903_108656681	3300032116	Freshwater	MMNNMDGNEEQEVFYEDYDTRAEIISQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYVSEIHAEIFDE
Ga0334994_0216573_120_347	3300033993	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0334996_0259162_660_887	3300033994	Freshwater	MSNMDGNEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYISEIHAEIFDEQNE
Ga0334979_0165410_747_974	3300033996	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY
Ga0334979_0397580_462_695	3300033996	Freshwater	MEEAEAEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0334987_0718076_283_510	3300034061	Freshwater	MNNMDGNEQEVFYEDYDTRAEIINQCYSALTAIEYVDPYDKKGQEQKNRIKQRVLDVLDYYISEIHAEIFDEDEN
Ga0335019_0469602_467_697	3300034066	Freshwater	MMSNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQEQKNRIKRKALEVIDYYISEIHAEIFDEDEN
Ga0334990_0119893_2_223	3300034068	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEE
Ga0334990_0426692_110_343	3300034068	Freshwater	MEEAEVEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
Ga0335020_0188863_373_606	3300034082	Freshwater	MEAVEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY
Ga0335020_0391668_449_670	3300034082	Freshwater	VEEAEVYYEDYDTRSEVINQCHSALTALEYLDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0335010_0238789_752_979	3300034092	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
Ga0335031_0326229_217_450	3300034104	Freshwater	MEEAEAEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
Ga0335031_0400494_1_231	3300034104	Freshwater	MMNNMDGNEEQEVFYEDYDTRAEIINQCYYALSSIEFLDPYDKKGQAQKNRIKQRVLDVLDYYISEIHAEIFDETNE
Ga0335031_0557245_67_297	3300034104	Freshwater	MSNMDGNEEEVFYEDYDTRAEIISQCYSALTAIEYVDPYDKKGQAQKNRIKQRVLDVLDYYISEIHAEIFDETNED
Ga0335031_0678374_2_184	3300034104	Freshwater	MEEEAEVYYEDYDTRSEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISE
Ga0335058_0008170_1482_1715	3300034121	Freshwater	MEAVEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED
Ga0335058_0027833_546_776	3300034121	Freshwater	MEEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEEY
Ga0335058_0029998_2236_2463	3300034121	Freshwater	MEEAEAEVYYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTHEEED
Ga0335061_0035638_451_687	3300034168	Freshwater	MEAESVEEAEVYYEDYDTRSEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDVTYEEED
Ga0335013_0236016_2_193	3300034284	Freshwater	MEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHA
Ga0335048_0214989_606_836	3300034356	Freshwater	MEEEEAEELFYEDYDTRAEVINQCHSALTAIEYVDPYDKKGQEQKNRIKRKALDVLDYYISEIHAEIFDENHEEED

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences