Metagenome / Metatranscriptome Family F075553

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075553
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	60 residues
Representative Sequence	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Number of Associated Samples	65
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.03 %
% of genes near scaffold ends (potentially truncated)	34.75 %
% of genes from short scaffolds (< 2000 bps)	87.29 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.322 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (29.661 % of family members)
Environment Ontology (ENVO)	Unclassified (34.746 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.441 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.93% β-sheet: 0.00% Coil/Unstructured: 44.07%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF10589	NADH_4Fe-4S	21.19
PF00582	Usp	18.64
PF07859	Abhydrolase_3	3.39
PF04024	PspC	2.54
PF01636	APH	2.54
PF01512	Complex1_51K	1.69
PF01070	FMN_dh	1.69
PF02922	CBM_48	0.85
PF00571	CBS	0.85
PF03699	UPF0182	0.85
PF08621	RPAP1_N	0.85
PF05368	NmrA	0.85
PF01548	DEDD_Tnp_IS110	0.85
PF13631	Cytochrom_B_N_2	0.85
PF00072	Response_reg	0.85
PF13551	HTH_29	0.85
PF14659	Phage_int_SAM_3	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	3.39
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	1.69
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	1.69
COG1894	NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F)	Energy production and conversion [C]	1.69
COG4656	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit	Energy production and conversion [C]	1.69
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.85
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.32 %
Unclassified	root	N/A	40.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.32 %
Unclassified	root	N/A	40.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.32 %
Unclassified	root	N/A	40.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.59 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.90 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.86 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	10.17 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Salsipaludibacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales	10.17 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.39 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.85 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Salsipaludibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae	10.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.39 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.85 %
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	0.85 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Salsipaludibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter	10.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.39 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	0.85 %
Mycolicibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter	0.85 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.85 %
Kibdelosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kibdelosporangium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Salsipaludibacter albus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	10.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.39 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Mycolicibacter icosiumassiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter icosiumassiliensis	0.85 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	0.85 %
unclassified Kibdelosporangium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kibdelosporangium → unclassified Kibdelosporangium	0.85 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Salsipaludibacter albus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	10.17 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.39 %
Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	1.69 %
Kibdelosporangium sp. MJ126-NF4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kibdelosporangium → unclassified Kibdelosporangium → Kibdelosporangium sp. MJ126-NF4	0.85 %
Frankia sp. Ea1.12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	0.85 %
Mycolicibacter icosiumassiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter icosiumassiliensis	0.85 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig567016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300000858\|JGI10213J12805_10039487	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300000956\|JGI10216J12902_100088472	Not Available	896	Open in IMG/M
3300003373\|JGI25407J50210_10003493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3767	Open in IMG/M
3300003373\|JGI25407J50210_10009510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2464	Open in IMG/M
3300003373\|JGI25407J50210_10135298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	607	Open in IMG/M
3300004016\|Ga0058689_10103453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300004463\|Ga0063356_101212787	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300004463\|Ga0063356_105307128	Not Available	553	Open in IMG/M
3300005562\|Ga0058697_10074772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1353	Open in IMG/M
3300005562\|Ga0058697_10224753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	862	Open in IMG/M
3300005562\|Ga0058697_10352492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	717	Open in IMG/M
3300005981\|Ga0081538_10002153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19599	Open in IMG/M
3300006046\|Ga0066652_101978390	Not Available	520	Open in IMG/M
3300009789\|Ga0126307_10016450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5496	Open in IMG/M
3300009789\|Ga0126307_10385105	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300009789\|Ga0126307_10690860	Not Available	823	Open in IMG/M
3300009789\|Ga0126307_11604293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	528	Open in IMG/M
3300009810\|Ga0105088_1054431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	681	Open in IMG/M
3300009836\|Ga0105068_1078002	Not Available	626	Open in IMG/M
3300009840\|Ga0126313_10090546	All Organisms → cellular organisms → Bacteria	2233	Open in IMG/M
3300009840\|Ga0126313_10299839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	1256	Open in IMG/M
3300009840\|Ga0126313_10592311	Not Available	893	Open in IMG/M
3300010036\|Ga0126305_10451206	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300010036\|Ga0126305_10923591	Not Available	596	Open in IMG/M
3300010037\|Ga0126304_10686219	Not Available	692	Open in IMG/M
3300010037\|Ga0126304_11121957	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	538	Open in IMG/M
3300010038\|Ga0126315_10087217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1768	Open in IMG/M
3300010038\|Ga0126315_10166625	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300010038\|Ga0126315_10580148	Not Available	722	Open in IMG/M
3300010038\|Ga0126315_11259556	Not Available	503	Open in IMG/M
3300010040\|Ga0126308_10312580	Not Available	1035	Open in IMG/M
3300010040\|Ga0126308_10373962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	947	Open in IMG/M
3300010040\|Ga0126308_11283511	Not Available	520	Open in IMG/M
3300010041\|Ga0126312_11255960	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010042\|Ga0126314_10621666	Not Available	789	Open in IMG/M
3300010042\|Ga0126314_10988656	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300010042\|Ga0126314_11444117	Not Available	517	Open in IMG/M
3300010044\|Ga0126310_11870646	Not Available	501	Open in IMG/M
3300010145\|Ga0126321_1390953	Not Available	913	Open in IMG/M
3300010166\|Ga0126306_10170220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1630	Open in IMG/M
3300010166\|Ga0126306_10360795	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300012022\|Ga0120191_10039167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300012200\|Ga0137382_11263393	Not Available	522	Open in IMG/M
3300012358\|Ga0137368_10846063	Not Available	562	Open in IMG/M
3300012360\|Ga0137375_10761355	Not Available	783	Open in IMG/M
3300012939\|Ga0162650_100035791	Not Available	776	Open in IMG/M
3300014487\|Ga0182000_10000515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6672	Open in IMG/M
3300014487\|Ga0182000_10025494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1604	Open in IMG/M
3300014487\|Ga0182000_10055601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1201	Open in IMG/M
3300014487\|Ga0182000_10187658	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300014487\|Ga0182000_10405443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	606	Open in IMG/M
3300018073\|Ga0184624_10330445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	683	Open in IMG/M
3300018076\|Ga0184609_10009361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3603	Open in IMG/M
3300018078\|Ga0184612_10599376	Not Available	522	Open in IMG/M
3300018081\|Ga0184625_10327572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	798	Open in IMG/M
3300018465\|Ga0190269_10783178	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17	683	Open in IMG/M
3300018466\|Ga0190268_10791115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300018476\|Ga0190274_10248962	Not Available	1609	Open in IMG/M
3300019377\|Ga0190264_10028280	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300019377\|Ga0190264_11509238	Not Available	584	Open in IMG/M
3300022694\|Ga0222623_10187267	Not Available	804	Open in IMG/M
3300026670\|Ga0208216_103232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	579	Open in IMG/M
3300026790\|Ga0208710_100709	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300027718\|Ga0209795_10026016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1980	Open in IMG/M
3300027718\|Ga0209795_10080890	Not Available	943	Open in IMG/M
3300027750\|Ga0209461_10028265	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300027750\|Ga0209461_10085115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300028711\|Ga0307293_10119902	Not Available	836	Open in IMG/M
3300028716\|Ga0307311_10202046	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300028771\|Ga0307320_10180181	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300028778\|Ga0307288_10151197	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300028796\|Ga0307287_10019277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2362	Open in IMG/M
3300028814\|Ga0307302_10058586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1799	Open in IMG/M
3300028878\|Ga0307278_10154724	Not Available	1026	Open in IMG/M
3300028881\|Ga0307277_10075719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	1402	Open in IMG/M
3300028881\|Ga0307277_10325654	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300028881\|Ga0307277_10366038	Not Available	643	Open in IMG/M
3300030510\|Ga0268243_1000886	All Organisms → cellular organisms → Bacteria	4645	Open in IMG/M
3300030516\|Ga0268255_10016582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2775	Open in IMG/M
3300030516\|Ga0268255_10110510	Not Available	822	Open in IMG/M
3300031548\|Ga0307408_101496011	Not Available	638	Open in IMG/M
3300031548\|Ga0307408_102096566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kibdelosporangium → unclassified Kibdelosporangium → Kibdelosporangium sp. MJ126-NF4	545	Open in IMG/M
3300031731\|Ga0307405_10115353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter icosiumassiliensis	1827	Open in IMG/M
3300031731\|Ga0307405_10169456	Not Available	1556	Open in IMG/M
3300031731\|Ga0307405_10565854	Not Available	922	Open in IMG/M
3300031824\|Ga0307413_10066084	All Organisms → cellular organisms → Bacteria	2255	Open in IMG/M
3300031852\|Ga0307410_10090132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2174	Open in IMG/M
3300031852\|Ga0307410_10170030	Not Available	1641	Open in IMG/M
3300031852\|Ga0307410_10248637	Not Available	1381	Open in IMG/M
3300031852\|Ga0307410_10258661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	1357	Open in IMG/M
3300031852\|Ga0307410_10596939	Not Available	920	Open in IMG/M
3300031852\|Ga0307410_11235451	Not Available	652	Open in IMG/M
3300031901\|Ga0307406_10092085	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300031901\|Ga0307406_10129503	Not Available	1769	Open in IMG/M
3300031901\|Ga0307406_10291511	Not Available	1249	Open in IMG/M
3300031901\|Ga0307406_10319561	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300031903\|Ga0307407_10616569	Not Available	809	Open in IMG/M
3300031911\|Ga0307412_10172522	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300031911\|Ga0307412_11110880	Not Available	704	Open in IMG/M
3300031995\|Ga0307409_100532995	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300031995\|Ga0307409_100814900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	942	Open in IMG/M
3300031995\|Ga0307409_101198555	Not Available	782	Open in IMG/M
3300031995\|Ga0307409_101567857	Not Available	686	Open in IMG/M
3300032002\|Ga0307416_100223437	All Organisms → cellular organisms → Bacteria	1808	Open in IMG/M
3300032002\|Ga0307416_100570410	Not Available	1207	Open in IMG/M
3300032002\|Ga0307416_101118501	Not Available	892	Open in IMG/M
3300032002\|Ga0307416_101302049	Not Available	832	Open in IMG/M
3300032002\|Ga0307416_103402976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Salsipaludibacterales → Salsipaludibacteraceae → Salsipaludibacter → Salsipaludibacter albus	532	Open in IMG/M
3300032004\|Ga0307414_11518798	Not Available	623	Open in IMG/M
3300032005\|Ga0307411_11000494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300032126\|Ga0307415_100103780	Not Available	2092	Open in IMG/M
3300032126\|Ga0307415_100150905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1788	Open in IMG/M
3300032126\|Ga0307415_100301339	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1328	Open in IMG/M
3300032126\|Ga0307415_100969709	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300032126\|Ga0307415_101027796	Not Available	767	Open in IMG/M
3300032159\|Ga0268251_10260191	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300034174\|Ga0334932_006344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1912	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.93%
Host-Associated	Host-Associated	44.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.85%
Plants	Host-Associated → Plants	44.07%
Aquatic	Environmental → Aquatic	5.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.66%
Phylloplane	Host-Associated → Plants → Phylloplane	6.78%
Sediment	Environmental → Aquatic → Sediment	4.24%
Roots	Host-Associated → Plants → Roots	3.39%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.66%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	6.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.39%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	2.54%
Loam	Environmental → Terrestrial → Soil → Loam	1.69%
Sand	Environmental → Terrestrial → Soil → Sand	1.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.66%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	6.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.39%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	2.54%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.85%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	29.66%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	21.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.71%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	6.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.39%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.54%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	2.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.69%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.69%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.85%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300026670	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 (SPAdes)	Environmental	Open in IMG/M
3300026790	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN607 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_01913020	2124908045	Soil	MSRNRAGDETNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGQQPGKRPPEGKP
JGI10213J12805_100394873	3300000858	Soil	MSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLETALRQQPRKRPPRVKP*
JGI10216J12902_1000884723	3300000956	Soil	MSRSRAGDESNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGRQPGKRPPEGKL*
JGI25407J50210_100034932	3300003373	Tabebuia Heterophylla Rhizosphere	MSRKKAGDETNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPSKRPPRVKP*
JGI25407J50210_100095102	3300003373	Tabebuia Heterophylla Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
JGI25407J50210_101352982	3300003373	Tabebuia Heterophylla Rhizosphere	MAHWRLQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0058689_101034531	3300004016	Agave	MSRNKSGDETNRALVAYVRNLSDEELADLLLSLEPKVYQDLLERALGQQPDE*
Ga0063356_1012127872	3300004463	Arabidopsis Thaliana Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP*
Ga0063356_1053071281	3300004463	Arabidopsis Thaliana Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEQLADLLLSLEPKAYQDLLERALGQQPYE*
Ga0058697_100747723	3300005562	Agave	VHASWRTGGFRDGDMSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0058697_102247532	3300005562	Agave	MTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0058697_103524922	3300005562	Agave	MSRNRAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQPPGKRPPEGKP*
Ga0081538_100021534	3300005981	Tabebuia Heterophylla Rhizosphere	MTRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0066652_1019783902	3300006046	Soil	MSRNKSGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQAPGKRPPEGKP*
Ga0126307_100164503	3300009789	Serpentine Soil	MSRNRAGDETNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGQPPGKRPPEGKP*
Ga0126307_103851051	3300009789	Serpentine Soil	MSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
Ga0126307_106908601	3300009789	Serpentine Soil	MSSNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126307_116042931	3300009789	Serpentine Soil	NKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0105088_10544312	3300009810	Groundwater Sand	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP*
Ga0105068_10780022	3300009836	Groundwater Sand	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSERPPRVKP*
Ga0126313_100905463	3300009840	Serpentine Soil	MTRNKAGDETNRTLVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRIKP*
Ga0126313_102998392	3300009840	Serpentine Soil	MTRNKAGDQTNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPSKRPPRIKP*
Ga0126313_105923111	3300009840	Serpentine Soil	TVHASWRTGGFRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP*
Ga0126305_104512061	3300010036	Serpentine Soil	WRTGGFRDGDMSRNKAGDETNRTLVAYVRNLSDEDLDDLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126305_109235911	3300010036	Serpentine Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126304_106862191	3300010037	Serpentine Soil	RNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126304_111219571	3300010037	Serpentine Soil	EWDMSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKPPPRVKP*
Ga0126315_100872172	3300010038	Serpentine Soil	MAHCGFRDGDMSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126315_101666251	3300010038	Serpentine Soil	TNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
Ga0126315_105801481	3300010038	Serpentine Soil	MSRNKAGDQTNRALVAYVRKLSDEELADLLVSLDPKVYQDLLERALGQQPRKR
Ga0126315_112595561	3300010038	Serpentine Soil	MTRNKAGDETNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPSKRPPRIKP*
Ga0126308_103125801	3300010040	Serpentine Soil	MTRNKAGDETNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALWQQPSKRPPRIKP*
Ga0126308_103739621	3300010040	Serpentine Soil	SRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
Ga0126308_112835112	3300010040	Serpentine Soil	SRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126312_112559601	3300010041	Serpentine Soil	MAHWRVQGWDMSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
Ga0126314_106216662	3300010042	Serpentine Soil	MARNKAGDETNRALVAYIRNLSDEELADLLVSLDPKVYQDLLERALRQQPKKRPPRVKP*
Ga0126314_109886561	3300010042	Serpentine Soil	GFRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0126314_114441171	3300010042	Serpentine Soil	ETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP*
Ga0126310_118706461	3300010044	Serpentine Soil	RTGGFRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP*
Ga0126321_13909532	3300010145	Soil	MSRSRAGDETNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGQQPDKPPPEGKP*
Ga0126306_101702203	3300010166	Serpentine Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKPPPRVKP*
Ga0126306_103607952	3300010166	Serpentine Soil	MSRNRAGDKTNRALVAYVRELSDEELADLLLSLDPKVYQDLLERALGQPPGKRPPEGKP*
Ga0120191_100391672	3300012022	Terrestrial	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0137382_112633932	3300012200	Vadose Zone Soil	MTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQELLERALGQQPRRRPPRVKP*
Ga0137368_108460631	3300012358	Vadose Zone Soil	MSRSRAGDETNWALVAHVRKLSDEELADLLPSLDPKVYQDLLERALWHRPGKPPPQG
Ga0137375_107613551	3300012360	Vadose Zone Soil	VSRSRAGDETNRALVAHVRKLSDEELADLLPSLDPKVYQDLLERALWHRPGKPPPQGKP*
Ga0162650_1000357912	3300012939	Soil	MTRNKAGDQTNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0182000_100005152	3300014487	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQASKRPPRIKP*
Ga0182000_100254944	3300014487	Soil	MSRNKSGDKTNRALVAYVRNLSDEELADLLLSLEPKVYQDLLERALGQQPDE*
Ga0182000_100556011	3300014487	Soil	MSRDKAGDETNRALVAYVRHLSDEELADLLVSLDPKVYQDLLERALGQQPSKRPPRVKP*
Ga0182000_101876582	3300014487	Soil	VHAIMAHWRVQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP*
Ga0182000_104054431	3300014487	Soil	MNRNKAGDETNRALVAYVRNLSDEELADLLISLDPKVYQDLLERALEQQPRKRPPRVKP*
Ga0184624_103304451	3300018073	Groundwater Sediment	MSKNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALRQQPRKRPPRVK
Ga0184609_100093613	3300018076	Groundwater Sediment	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0184612_105993761	3300018078	Groundwater Sediment	MSRNKAGDETNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGQQPGKRP
Ga0184625_103275722	3300018081	Groundwater Sediment	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0190269_107831781	3300018465	Soil	MSRNKAGDETNRALVAYVRKLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0190268_107911152	3300018466	Soil	MTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0190274_102489623	3300018476	Soil	MGRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0190264_100282803	3300019377	Soil	MSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0190264_115092381	3300019377	Soil	MSRDKAGDETNRALVAYVRHLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0222623_101872671	3300022694	Groundwater Sediment	MSKDKAGDETNRALVAYVRDLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPRGSSHELG
Ga0208216_1032321	3300026670	Soil	MTRKKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0208710_1007093	3300026790	Soil	MGTMSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP
Ga0209795_100260161	3300027718	Agave	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0209795_100808901	3300027718	Agave	MSRNKSGDKTNRALVAYVRNLSDEELADLLLSLEPKVYQDLLERALGQQPDE
Ga0209461_100282652	3300027750	Agave	MAHWWLQGWDTTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0209461_100851153	3300027750	Agave	MSRNKSGDETNRALVAYVRNLSDEELADLLLSLEPKVYQDLLERALGQQPDE
Ga0307293_101199022	3300028711	Soil	MSKDKAGDETNRALVAYVRDLSDEELADLLLSLDPKVYQDLLERALGQQPGKRPPRVKP
Ga0307311_102020462	3300028716	Soil	MSRNKAGDETNRALVAYVRNLSDEELADQLVSLDPKVYQDLLERALGQQPGKRSPRVK
Ga0307320_101801812	3300028771	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLARALGQQPRKRPPRVKP
Ga0307288_101511972	3300028778	Soil	MAHWGFRDGDMSKDKAGDETNRALVAYVRDLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0307287_100192773	3300028796	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKIYQDLLERALGQQPRKRPPRVKP
Ga0307302_100585861	3300028814	Soil	SWRSGRFRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKIYQDLLERALGQQPRKRPPRVKP
Ga0307278_101547242	3300028878	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPP
Ga0307277_100757192	3300028881	Soil	MTRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0307277_103256542	3300028881	Soil	FRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0307277_103660382	3300028881	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRV
Ga0268243_10008863	3300030510	Soil	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQASKRPPRIKP
Ga0268255_100165821	3300030516	Agave	AIMAHWRVQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0268255_101105102	3300030516	Agave	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPSVKP
Ga0307408_1014960111	3300031548	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPS
Ga0307408_1020965661	3300031548	Rhizosphere	MTRNKAGDETNRALVAYVRNLSDEELADVLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307405_101153531	3300031731	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP
Ga0307405_101694564	3300031731	Rhizosphere	MTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPSQPPPRVKP
Ga0307405_105658542	3300031731	Rhizosphere	MAHWRVQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307413_100660842	3300031824	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0307410_100901322	3300031852	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307410_101700302	3300031852	Rhizosphere	MAHWRVQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPSQPPPRVKP
Ga0307410_102486371	3300031852	Rhizosphere	MSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPR
Ga0307410_102586612	3300031852	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0307410_105969392	3300031852	Rhizosphere	NRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0307410_112354512	3300031852	Rhizosphere	MSRNKSGDETNRALVAYVRNLSDEELADLLLSLEPKVYQDLLERALGQQPDEWPPGIKP
Ga0307406_100920852	3300031901	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKPGDP
Ga0307406_101295031	3300031901	Rhizosphere	VQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPSQPPPRVKP
Ga0307406_102915113	3300031901	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVK
Ga0307406_103195611	3300031901	Rhizosphere	SWRTGGFRDGDMTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307407_106165691	3300031903	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307412_101725222	3300031911	Rhizosphere	MSSNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307412_111108801	3300031911	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQ
Ga0307409_1005329952	3300031995	Rhizosphere	VHASWRTGGFRDGDMSRNKAGDQTNRALVADVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307409_1008149002	3300031995	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERTLGQQPSKRPPRVKP
Ga0307409_1011985552	3300031995	Rhizosphere	MTSNQAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPSQPPPRVKP
Ga0307409_1015678572	3300031995	Rhizosphere	LAGFRDGDMSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALRQQPRKRPPRVKP
Ga0307416_1002234372	3300032002	Rhizosphere	MSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307416_1005704101	3300032002	Rhizosphere	MSSNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKR
Ga0307416_1011185012	3300032002	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307416_1013020492	3300032002	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPRKQPPRVKP
Ga0307416_1034029762	3300032002	Rhizosphere	TNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307414_115187981	3300032004	Rhizosphere	MSRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKQPPRVKP
Ga0307411_110004941	3300032005	Rhizosphere	GFKEWDMSRNKAGDQTNRALVAYVRNLSDEKLADLLVSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0307415_1001037804	3300032126	Rhizosphere	MSRNKAGDQTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPGKRPPRVKP
Ga0307415_1001509051	3300032126	Rhizosphere	NKAGDVTNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPRVKP
Ga0307415_1003013393	3300032126	Rhizosphere	MSRNKSGDETNRALVAYVRNLSDEELADLLLSLEPKVYQALLERALGQQPDESPPGIKP
Ga0307415_1009697092	3300032126	Rhizosphere	MSSNKAGDETNRALVAYVRNLCDEELADLLVSLDPKVYQDLLELALRQQPKKRPPRAKP
Ga0307415_1010277962	3300032126	Rhizosphere	KAGDETNRALVAYVRNLSDEELADLLLSLDPKVYQDLLERALGQQPSKPPPRVKP
Ga0268251_102601911	3300032159	Agave	VQGWDMTRNKAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPSKRPPRVKP
Ga0334932_006344_1190_1369	3300034174	Sub-Biocrust Soil	MSRKRAGDETNRALVAYVRNLSDEELADLLVSLDPKVYQDLLERALGQQPRKRPPPVKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075553

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences